NO07G02670.1, NO07G02670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02670.1
Unique NameNO07G02670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1071
Alignment locationchr7:771583..772653 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:771583..772653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G02670.1 vs.
Match: EWM27096.1 (isoprenoid biosynthesis enzyme [Nannochloropsis gaditana])

HSP 1 Score: 510.8 bits (1314), Expect = 3.500e-141
Identity = 248/306 (81.05%), Postives = 278/306 (90.85%), Query Frame = 0 
Query:   51 LSSTSTSSTAADPANYGEYCVELVKQHDFDAYLCGLLVPTPSRRAFFALRAFNVETALIKDVARGNALPGQMRMQWWREVIGAIYQDKSPAHPVARALAEAVQAHNLTRRWLDRLLEARLQDLDNIQPTTMADLEDYAEHTASSLLYLTLESLGVQHQTADHAASHVGKATGITTLLRATRYHAAQQSLYIPLELQREFKVNVNDILRGPQSPEAVQALSDVFFEVATQAHLHLEHARELLSSTPSPATGPLPKATFTALLPAVRTTMYLEALQKSGFDALDEGLLPRSHLGFQMRLWWANWRRKI 357
            L++ ST S+  DPAN+G+YCVELVKQHDFDAYLCGLLVP  SRRA+FALRAFNVETALIKDVARGNALPGQMRMQWWREVI  IYQ KSPAHPVARAL EAVQAHNLTRRWLDRLLEAR  DL NIQPT M +LEDYAE+TASSLLYLTLE+L V+H TADHAASHVG+ATGI T+LRAT++HA+ QSLY+PLE+QREFKVNVNDILRGP+SPEA QALSD+FFEVATQAHLH+EHARE+L+S P  ++GPLP+ T TALLPAVRTTMYL+ALQK+GF+ALD+ LLPRSHL FQ+RLWWANWR KI
Sbjct:   36 LAAFSTKSSGPDPANHGQYCVELVKQHDFDAYLCGLLVPRSSRRAYFALRAFNVETALIKDVARGNALPGQMRMQWWREVISGIYQGKSPAHPVARALCEAVQAHNLTRRWLDRLLEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTADHAASHVGRATGIATVLRATKFHASHQSLYVPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGPLPRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWRGKI 341
The following BLAST results are available for this feature:
BLAST of NO07G02670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27096.13.500e-14181.05isoprenoid biosynthesis enzyme [Nannochloropsis ga... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02670NO07G02670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02670.1NO07G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02670.1.cds1NO07G02670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02670.1 ID=NO07G02670.1|Name=NO07G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1071bp
ATGTCTCCGCGGTCATCCGTCGCCTATTTTCGGGCCGCCGCCATCGCCGC
CAAATCCCTCTGTCCCACACATCCCACACACTTGTCCTCTCGAACACGAA
ACCTCCCCTCTCCATCTCATCGACCTCACCCCGGACCGCGGCCGTACTAT
CTCTCCTCTACCTCCACGTCCTCCACTGCCGCAGACCCTGCCAATTACGG
CGAATACTGTGTTGAGCTGGTCAAGCAGCACGATTTTGACGCCTATTTGT
GTGGCCTCCTTGTGCCCACCCCCTCCCGACGGGCCTTTTTTGCCCTCCGT
GCGTTCAACGTTGAAACGGCGCTCATCAAGGACGTGGCCCGCGGCAATGC
ACTGCCGGGGCAAATGCGTATGCAATGGTGGCGGGAAGTCATCGGTGCTA
TCTACCAAGATAAATCCCCTGCGCACCCTGTCGCCCGTGCCTTGGCAGAA
GCCGTACAAGCCCACAACCTCACCCGGAGGTGGCTCGACCGTCTCCTCGA
AGCTCGCCTCCAAGATCTAGATAACATCCAACCCACAACCATGGCCGATC
TGGAGGACTACGCCGAGCACACTGCCTCCTCCCTCCTCTACCTTACCCTT
GAAAGCCTCGGCGTGCAGCACCAAACGGCGGATCACGCTGCAAGTCACGT
AGGCAAAGCCACAGGCATCACCACCTTGCTACGTGCAACCAGATACCACG
CCGCCCAACAGTCCCTCTACATCCCTCTGGAGCTCCAAAGAGAATTTAAA
GTGAACGTAAACGATATTCTGAGAGGGCCTCAAAGCCCCGAGGCTGTCCA
AGCCTTATCCGACGTATTTTTTGAGGTAGCAACCCAGGCACATTTACACC
TGGAGCACGCAAGAGAGTTGCTTTCTTCTACCCCCTCTCCGGCGACGGGA
CCATTGCCAAAGGCAACGTTTACGGCGTTACTACCGGCTGTGAGGACGAC
AATGTACCTGGAGGCGTTGCAGAAAAGTGGGTTTGACGCTCTGGATGAGG
GATTGTTGCCACGAAGTCATCTAGGATTTCAAATGCGGTTGTGGTGGGCG
AACTGGAGGCGGAAAATTTAG
back to top

protein sequence of NO07G02670.1

>NO07G02670.1-protein ID=NO07G02670.1-protein|Name=NO07G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MSPRSSVAYFRAAAIAAKSLCPTHPTHLSSRTRNLPSPSHRPHPGPRPYY
LSSTSTSSTAADPANYGEYCVELVKQHDFDAYLCGLLVPTPSRRAFFALR
AFNVETALIKDVARGNALPGQMRMQWWREVIGAIYQDKSPAHPVARALAE
AVQAHNLTRRWLDRLLEARLQDLDNIQPTTMADLEDYAEHTASSLLYLTL
ESLGVQHQTADHAASHVGKATGITTLLRATRYHAAQQSLYIPLELQREFK
VNVNDILRGPQSPEAVQALSDVFFEVATQAHLHLEHARELLSSTPSPATG
PLPKATFTALLPAVRTTMYLEALQKSGFDALDEGLLPRSHLGFQMRLWWA
NWRRKI*
back to top

mRNA from alignment at chr7:771583..772653+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02670.1 ID=NO07G02670.1|Name=NO07G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1071bp|location=Sequence derived from alignment at chr7:771583..772653+ (Nannochloropsis oceanica)
ATGTCTCCGCGGTCATCCGTCGCCTATTTTCGGGCCGCCGCCATCGCCGC
CAAATCCCTCTGTCCCACACATCCCACACACTTGTCCTCTCGAACACGAA
ACCTCCCCTCTCCATCTCATCGACCTCACCCCGGACCGCGGCCGTACTAT
CTCTCCTCTACCTCCACGTCCTCCACTGCCGCAGACCCTGCCAATTACGG
CGAATACTGTGTTGAGCTGGTCAAGCAGCACGATTTTGACGCCTATTTGT
GTGGCCTCCTTGTGCCCACCCCCTCCCGACGGGCCTTTTTTGCCCTCCGT
GCGTTCAACGTTGAAACGGCGCTCATCAAGGACGTGGCCCGCGGCAATGC
ACTGCCGGGGCAAATGCGTATGCAATGGTGGCGGGAAGTCATCGGTGCTA
TCTACCAAGATAAATCCCCTGCGCACCCTGTCGCCCGTGCCTTGGCAGAA
GCCGTACAAGCCCACAACCTCACCCGGAGGTGGCTCGACCGTCTCCTCGA
AGCTCGCCTCCAAGATCTAGATAACATCCAACCCACAACCATGGCCGATC
TGGAGGACTACGCCGAGCACACTGCCTCCTCCCTCCTCTACCTTACCCTT
GAAAGCCTCGGCGTGCAGCACCAAACGGCGGATCACGCTGCAAGTCACGT
AGGCAAAGCCACAGGCATCACCACCTTGCTACGTGCAACCAGATACCACG
CCGCCCAACAGTCCCTCTACATCCCTCTGGAGCTCCAAAGAGAATTTAAA
GTGAACGTAAACGATATTCTGAGAGGGCCTCAAAGCCCCGAGGCTGTCCA
AGCCTTATCCGACGTATTTTTTGAGGTAGCAACCCAGGCACATTTACACC
TGGAGCACGCAAGAGAGTTGCTTTCTTCTACCCCCTCTCCGGCGACGGGA
CCATTGCCAAAGGCAACGTTTACGGCGTTACTACCGGCTGTGAGGACGAC
AATGTACCTGGAGGCGTTGCAGAAAAGTGGGTTTGACGCTCTGGATGAGG
GATTGTTGCCACGAAGTCATCTAGGATTTCAAATGCGGTTGTGGTGGGCG
AACTGGAGGCGGAAAATTTAG
back to top

Coding sequence (CDS) from alignment at chr7:771583..772653+

>NO07G02670.1 ID=NO07G02670.1|Name=NO07G02670.1|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at chr7:771583..772653+ (Nannochloropsis oceanica)
ATGTCTCCGCGGTCATCCGTCGCCTATTTTCGGGCCGCCGCCATCGCCGC
CAAATCCCTCTGTCCCACACATCCCACACACTTGTCCTCTCGAACACGAA
ACCTCCCCTCTCCATCTCATCGACCTCACCCCGGACCGCGGCCGTACTAT
CTCTCCTCTACCTCCACGTCCTCCACTGCCGCAGACCCTGCCAATTACGG
CGAATACTGTGTTGAGCTGGTCAAGCAGCACGATTTTGACGCCTATTTGT
GTGGCCTCCTTGTGCCCACCCCCTCCCGACGGGCCTTTTTTGCCCTCCGT
GCGTTCAACGTTGAAACGGCGCTCATCAAGGACGTGGCCCGCGGCAATGC
ACTGCCGGGGCAAATGCGTATGCAATGGTGGCGGGAAGTCATCGGTGCTA
TCTACCAAGATAAATCCCCTGCGCACCCTGTCGCCCGTGCCTTGGCAGAA
GCCGTACAAGCCCACAACCTCACCCGGAGGTGGCTCGACCGTCTCCTCGA
AGCTCGCCTCCAAGATCTAGATAACATCCAACCCACAACCATGGCCGATC
TGGAGGACTACGCCGAGCACACTGCCTCCTCCCTCCTCTACCTTACCCTT
GAAAGCCTCGGCGTGCAGCACCAAACGGCGGATCACGCTGCAAGTCACGT
AGGCAAAGCCACAGGCATCACCACCTTGCTACGTGCAACCAGATACCACG
CCGCCCAACAGTCCCTCTACATCCCTCTGGAGCTCCAAAGAGAATTTAAA
GTGAACGTAAACGATATTCTGAGAGGGCCTCAAAGCCCCGAGGCTGTCCA
AGCCTTATCCGACGTATTTTTTGAGGTAGCAACCCAGGCACATTTACACC
TGGAGCACGCAAGAGAGTTGCTTTCTTCTACCCCCTCTCCGGCGACGGGA
CCATTGCCAAAGGCAACGTTTACGGCGTTACTACCGGCTGTGAGGACGAC
AATGTACCTGGAGGCGTTGCAGAAAAGTGGGTTTGACGCTCTGGATGAGG
GATTGTTGCCACGAAGTCATCTAGGATTTCAAATGCGGTTGTGGTGGGCG
AACTGGAGGCGGAAAATTTAG
back to top
Synonyms
Publications