NO07G02660.1, NO07G02660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02660.1
Unique NameNO07G02660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length849
Alignment locationchr7:768228..769161 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:768228..769161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02660.1 vs.
Match: EWM29116.1 (nucleotide sugar transporter family protein [Nannochloropsis gaditana])

HSP 1 Score: 294.3 bits (752), Expect = 4.100e-76
Identity = 154/279 (55.20%), Postives = 204/279 (73.12%), Query Frame = 0 
Query:    3 SGVGIVILNKYIVTEDSFDYVVFLSFCHYFFTMVFSGILAKAGYVTPKQIAIDKRVTLAMASLGSIVFMNLSLAHNSVGFYQLSKLACIPVIIVVEYALYERIVPLSKLLTVTVIVFGVGVASVSDVTINFIGMILAAVAVTFTSMAQILCSHYQKYLECDSMQLLHSTCPLVTIGMLVFIPFFHNVRELGQAEFSAPLLTHIFWSCVLALGVNITNFLILGKTSPLAYQVLGHLKATIILILGVVVFNYQYNAKVIAGTVLALGGVVAYTELGRQKTV 282
            S VG+VI+NKYIV  D+F++++FLSF H+ FT +   +L   G+   K   I   + +A+ SLGS+ FMNL+LAHNSVGFYQLSKLACIPV I +E A Y + VP   L+T+  I  GVG+A+V+DV++N +G   AA+AV FTS+AQI  S YQK L+CD++QLL+ + PL+  G  + IPFF NVR L Q   S  LL H+  SCVLALGVNI+N+L+LGKTSPL YQVLGHLK  +IL+LG VVF Y+ NA+ + G ++ALGGV+AYTEL R+ ++
Sbjct:   16 SVVGVVIMNKYIVAVDAFNFMIFLSFTHFVFTYLGCSVLLHLGFFNYKPAPIRGVLPVALGSLGSVAFMNLNLAHNSVGFYQLSKLACIPVTIALERAFYGKTVPGPVLVTLIPITIGVGIATVNDVSVNLVGTAFAALAVLFTSLAQIFTSTYQKQLDCDALQLLYHSSPLIAAGSFLMIPFFDNVRYLVQTSISLSLLNHVLSSCVLALGVNISNYLVLGKTSPLTYQVLGHLKTILILVLGFVVFKYKSNARAVVGILIALGGVIAYTELKRRMSL 294
The following BLAST results are available for this feature:
BLAST of NO07G02660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29116.14.100e-7655.20nucleotide sugar transporter family protein [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02660NO07G02660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02660.1NO07G02660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02660.1.cds1NO07G02660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02660.1.cds2NO07G02660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02660.1 ID=NO07G02660.1|Name=NO07G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=849bp
ATGATCTCCGGAGTGGGAATTGTGATTTTAAACAAATACATTGTCACCGA
GGACAGTTTTGACTACGTGGTGTTCTTATCCTTTTGTCATTACTTCTTTA
CAATGGTATTTTCCGGCATCCTGGCAAAGGCAGGATATGTAACGCCCAAA
CAAATCGCCATCGACAAGCGCGTGACCCTCGCAATGGCATCTCTCGGCTC
CATTGTCTTCATGAATCTGAGCTTGGCTCATAATTCTGTTGGCTTTTACC
AGCTCTCCAAGCTCGCATGTATCCCCGTCATTATTGTGGTTGAATATGCT
CTATACGAAAGAATAGTGCCTCTCTCCAAGCTGCTGACGGTCACCGTCAT
CGTCTTTGGGGTTGGGGTGGCATCTGTAAGTGATGTGACAATCAATTTCA
TTGGAATGATTCTGGCCGCGGTGGCGGTTACTTTTACATCCATGGCACAA
ATACTTTGTTCGCACTACCAAAAGTACTTGGAATGTGATTCCATGCAGCT
CTTACACAGTACCTGCCCCCTAGTGACGATCGGGATGCTGGTCTTTATCC
CCTTCTTCCACAACGTCCGCGAGCTTGGCCAGGCGGAGTTTTCAGCACCC
TTATTGACACACATCTTTTGGTCCTGTGTTTTGGCCTTGGGAGTCAACAT
CACAAACTTTTTAATCTTGGGCAAAACCTCGCCCTTGGCATACCAGGTCC
TCGGGCACCTCAAAGCCACAATTATTTTGATACTTGGGGTCGTGGTATTC
AATTATCAGTACAACGCGAAAGTCATTGCCGGCACTGTCCTGGCATTAGG
AGGAGTGGTGGCCTATACCGAACTTGGAAGACAAAAAACTGTAGGTTAG
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protein sequence of NO07G02660.1

>NO07G02660.1-protein ID=NO07G02660.1-protein|Name=NO07G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MISGVGIVILNKYIVTEDSFDYVVFLSFCHYFFTMVFSGILAKAGYVTPK
QIAIDKRVTLAMASLGSIVFMNLSLAHNSVGFYQLSKLACIPVIIVVEYA
LYERIVPLSKLLTVTVIVFGVGVASVSDVTINFIGMILAAVAVTFTSMAQ
ILCSHYQKYLECDSMQLLHSTCPLVTIGMLVFIPFFHNVRELGQAEFSAP
LLTHIFWSCVLALGVNITNFLILGKTSPLAYQVLGHLKATIILILGVVVF
NYQYNAKVIAGTVLALGGVVAYTELGRQKTVG*
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mRNA from alignment at chr7:768228..769161-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02660.1 ID=NO07G02660.1|Name=NO07G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=934bp|location=Sequence derived from alignment at chr7:768228..769161- (Nannochloropsis oceanica)
ATGATCTCCGGAGTGGGAATTGTGATTTTAAACAAATACATTGTCACCGA
GGACAGTTTTGACTACGTGGTGTTCTTATCCTTTTGTCATTACTTCTTTA
CAATGGTATTTTCCGGCATCCTGGCAAAGGCAGGATATGTAACGCCCAAA
CAAATCGCCATCGACAAGCGCGTGACCCTCGCAATGGTATGAACAGCTAA
ATGTGAAATTTCCTATTGTCTGTTCCTATCCCCCTCCTATTTTCATTCTC
CTTGCACTTTCTCCTCACCAGGCATCTCTCGGCTCCATTGTCTTCATGAA
TCTGAGCTTGGCTCATAATTCTGTTGGCTTTTACCAGCTCTCCAAGCTCG
CATGTATCCCCGTCATTATTGTGGTTGAATATGCTCTATACGAAAGAATA
GTGCCTCTCTCCAAGCTGCTGACGGTCACCGTCATCGTCTTTGGGGTTGG
GGTGGCATCTGTAAGTGATGTGACAATCAATTTCATTGGAATGATTCTGG
CCGCGGTGGCGGTTACTTTTACATCCATGGCACAAATACTTTGTTCGCAC
TACCAAAAGTACTTGGAATGTGATTCCATGCAGCTCTTACACAGTACCTG
CCCCCTAGTGACGATCGGGATGCTGGTCTTTATCCCCTTCTTCCACAACG
TCCGCGAGCTTGGCCAGGCGGAGTTTTCAGCACCCTTATTGACACACATC
TTTTGGTCCTGTGTTTTGGCCTTGGGAGTCAACATCACAAACTTTTTAAT
CTTGGGCAAAACCTCGCCCTTGGCATACCAGGTCCTCGGGCACCTCAAAG
CCACAATTATTTTGATACTTGGGGTCGTGGTATTCAATTATCAGTACAAC
GCGAAAGTCATTGCCGGCACTGTCCTGGCATTAGGAGGAGTGGTGGCCTA
TACCGAACTTGGAAGACAAAAAACTGTAGGTTAG
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Coding sequence (CDS) from alignment at chr7:768228..769161-

>NO07G02660.1 ID=NO07G02660.1|Name=NO07G02660.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr7:768228..769161- (Nannochloropsis oceanica)
ATGATCTCCGGAGTGGGAATTGTGATTTTAAACAAATACATTGTCACCGA
GGACAGTTTTGACTACGTGGTGTTCTTATCCTTTTGTCATTACTTCTTTA
CAATGGTATTTTCCGGCATCCTGGCAAAGGCAGGATATGTAACGCCCAAA
CAAATCGCCATCGACAAGCGCGTGACCCTCGCAATGGCATCTCTCGGCTC
CATTGTCTTCATGAATCTGAGCTTGGCTCATAATTCTGTTGGCTTTTACC
AGCTCTCCAAGCTCGCATGTATCCCCGTCATTATTGTGGTTGAATATGCT
CTATACGAAAGAATAGTGCCTCTCTCCAAGCTGCTGACGGTCACCGTCAT
CGTCTTTGGGGTTGGGGTGGCATCTGTAAGTGATGTGACAATCAATTTCA
TTGGAATGATTCTGGCCGCGGTGGCGGTTACTTTTACATCCATGGCACAA
ATACTTTGTTCGCACTACCAAAAGTACTTGGAATGTGATTCCATGCAGCT
CTTACACAGTACCTGCCCCCTAGTGACGATCGGGATGCTGGTCTTTATCC
CCTTCTTCCACAACGTCCGCGAGCTTGGCCAGGCGGAGTTTTCAGCACCC
TTATTGACACACATCTTTTGGTCCTGTGTTTTGGCCTTGGGAGTCAACAT
CACAAACTTTTTAATCTTGGGCAAAACCTCGCCCTTGGCATACCAGGTCC
TCGGGCACCTCAAAGCCACAATTATTTTGATACTTGGGGTCGTGGTATTC
AATTATCAGTACAACGCGAAAGTCATTGCCGGCACTGTCCTGGCATTAGG
AGGAGTGGTGGCCTATACCGAACTTGGAAGACAAAAAACTGTAGGTTAG
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Synonyms
Publications