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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:744098..746665 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G02560.1 vs.
Match: XP_005854512.1 (cral family protein [Nannochloropsis gaditana CCMP526]; EKU21847.1 cral family protein [Nannochloropsis gaditana CCMP526]; EWM27106.1 cral-trio family protein [Nannochloropsis gaditana]) HSP 1 Score: 545.0 bits (1403), Expect = 3.400e-151 Identity = 357/722 (49.45%), Postives = 451/722 (62.47%), Query Frame = 0
Query: 1 MQLRYMAWTLVGGSIMASQGPLLAAADAPSSTMPSLTGGGVMSTLVSVAHACTSKEASSSPPPLSSSTLSRWSFLKWRRRSTAPAQKTTPWFIPAEMM---QEEVGEG-----RGGGTTAA-AMQEEEGKE-LDAPIMMSFGMTEKDNISTT-TTTRFGSSMLELCNSSSSSSSSSGGMADELQGTAKKAIADVRALVDNTEAHIETEETAEEEACAAAATEASAAAAVTEAAARAAAPASPTPTTLTSFLKPRTRNAAATKWMISDDEDSIPCGRSLSSALSVIGGGLPLRRGGSTMGSATAASSSFPSVARSMSSTYFSSASTMTKVYHTEETVVQEAREGGPTWASTVTEEEEISISTTATSSSPLSPSSTFLAQDAAVAIEATVCAVAEKAHTAAAAAVVGTTLD---EDVKRETELAERFHAETARQVEGLTSDQRRALERVREALYGPAVCEKRIRAVDELAVCGDRDAMMLSFLQRKNYDAEVALKSFERVISWRMENEIEDVFEGGRLAREKVEKHRECWPTAFYFTKDKEGDPVFVDRMGILELAKLRKGEVQLDIQDMVLYYVQTMEGRRRLLFPHLSRQSGRHITSYVSVVDVSHFGPQHFGRHALSFLAAIGAVHDDTYSDLVKSMYIINAPFFFHKVFHLISCMMNQELKDRLKVLNRKQSLVELSKIMPSDVAQAIVEGNHEKEREEERKLHAFLDYAASKGLHKRRW 709
MQLR +AW LVG S++AS G LLAA+D P TMP+LTG GVMS+LV+ A A K + SS WS KWRR+S+ A+ TPWFIP E+M +E+ EG RG AA A+ E+ E L+ S E D + +R +S+LE+ +S S +++ +A V+++V+ EA EE E+A P+P L KP + A + DDE SIPCGRSLSSALSVIGGGLPLRRGGS AT + SV S ++T T+ H+ V +A W + EE E ++S T ST+ + + A+ V + H + LD E+ + ETELA R AETA++V GL+ ++R ALERVR ALYGP V +R+ AVD+L VCGDRDAM+LSFL RK++DA+ AL+SF+RVI WRM +IE+VFEG RLAR KVEKHR CWPTAFYF++D GDP+FVDRMG+LELA+LR G L + DM+ YY+QTMEGRRRLLFPHLSR+SGR I+ YVSVVDV HFGPQHFGRHAL F+ ++G VHD+ YSDLVKS+YIINAPFFFHKVFHLISCMM+QELKDRLKVLN+++SL ELS+I+P D+A+ IVEG+ ERE ER+LHAFLD AA GLH+RRW
Sbjct: 1 MQLRCIAWVLVGASVVASDGMLLAASDGPP-TMPTLTGSGVMSSLVAAAAASGGKGQRKASALFSSE----WSSFKWRRKSSQ-AKSRTPWFIPPELMCVPREKDREGVEAEKRGIDAHAATALSREDADEGLEKATTTSLLEEEVDTATPAGVVSRTEASILEVSSSEIHSHEDR-----DVKKNMTTTLAGVKSIVEGEEADEREEEKLREDA------------------------EPPSPPRLRPVSKPSAKRAPILRKRREDDELSIPCGRSLSSALSVIGGGLPLRRGGSDTVCATGGERAASSV--------HSPSTTTTRGIHSAGEVEIDA------WEERI-EEGEGALSVTR---------STWHYEAVVIEAGASDGRVEAEGHLEVSQGPRLGILDDGLEEEEGETELAARLRAETAQRVGGLSVEKRAALERVRIALYGPDVDPRRVAAVDQLVVCGDRDAMILSFLARKDFDADTALRSFDRVIRWRMAQDIEEVFEGERLARRKVEKHRACWPTAFYFSQDHAGDPIFVDRMGLLELARLRTGPEALGLTDMITYYIQTMEGRRRLLFPHLSRRSGRLISQYVSVVDVKHFGPQHFGRHALQFMRSLGDVHDENYSDLVKSLYIINAPFFFHKVFHLISCMMSQELKDRLKVLNKRESLRELSQILPPDLARRIVEGDPAGEREGERELHAFLDRAARAGLHRRRW 663
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G02560.1 ID=NO07G02560.1|Name=NO07G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2142bp ATGCAGCTCCGATACATGGCCTGGACCCTTGTTGGGGGCTCCATCATGGC CAGCCAGGGACCCTTATTAGCTGCGGCGGATGCCCCTTCTTCGACCATGC CCTCCTTGACAGGGGGCGGGGTGATGTCAACCCTCGTCTCGGTCGCGCAT GCATGTACAAGTAAGGAGGCATCGTCGTCGCCGCCGCCGTTGTCATCGTC CACCTTATCACGATGGTCCTTTCTTAAGTGGCGAAGAAGATCTACGGCAC CTGCGCAAAAGACAACGCCGTGGTTTATCCCTGCTGAAATGATGCAAGAG GAGGTCGGAGAGGGAAGAGGCGGGGGAACAACAGCAGCAGCAATGCAAGA GGAAGAAGGAAAAGAGCTTGACGCACCAATAATGATGTCTTTTGGTATGA CGGAAAAAGATAATATCTCAACGACGACGACCACTCGGTTTGGAAGCAGC ATGCTGGAGTTGTGTAACAGCAGCAGCAGCAGCAGCAGCAGCAGTGGCGG GATGGCAGACGAATTGCAGGGGACTGCCAAAAAGGCGATTGCCGACGTTC GAGCTCTAGTAGACAACACCGAGGCCCACATAGAGACAGAGGAAACGGCG GAGGAAGAGGCCTGTGCAGCAGCAGCGACGGAAGCCTCTGCAGCAGCAGC AGTGACGGAAGCTGCTGCACGAGCGGCTGCTCCTGCTTCTCCAACACCAA CAACGCTGACATCCTTTCTTAAGCCCAGGACGCGAAACGCCGCGGCAACC AAATGGATGATTTCTGATGACGAGGATTCCATCCCGTGCGGTCGTTCGCT GTCGTCTGCATTGAGTGTGATAGGTGGTGGATTACCTCTACGAAGGGGAG GGAGCACGATGGGATCTGCCACCGCCGCCTCCTCCTCCTTTCCCTCTGTC GCCCGTTCTATGTCCAGCACATATTTTAGCTCTGCCAGCACAATGACCAA GGTGTATCATACTGAGGAGACGGTGGTGCAGGAAGCGAGGGAGGGAGGGC CGACGTGGGCGAGCACCGTTACCGAGGAGGAGGAGATTTCCATTTCGACG ACCGCTACATCATCCTCCCCTCTCTCCCCCTCTTCTACTTTCCTTGCTCA AGATGCAGCAGTGGCTATAGAGGCAACTGTATGTGCAGTTGCAGAAAAGG CGCACACTGCTGCTGCTGCTGCTGTTGTTGGCACCACTCTCGACGAAGAC GTCAAACGTGAGACAGAGCTGGCAGAGCGATTCCACGCCGAGACGGCGAG GCAGGTGGAGGGCCTGACGTCGGACCAGAGGAGAGCATTGGAAAGAGTCA GAGAGGCATTGTACGGCCCAGCTGTGTGTGAGAAGAGGATAAGAGCAGTG GACGAGCTGGCGGTGTGCGGGGACCGAGATGCGATGATGTTGTCGTTTTT GCAACGAAAGAATTATGATGCGGAGGTGGCTCTCAAGAGTTTTGAGAGAG TTATCAGCTGGAGAATGGAAAATGAGATTGAGGATGTTTTTGAGGGAGGG CGGCTGGCGCGGGAGAAGGTGGAGAAGCATCGGGAGTGTTGGCCAACGGC ATTCTATTTCACAAAGGACAAGGAGGGGGACCCAGTGTTTGTGGACCGAA TGGGGATTTTGGAACTGGCAAAGCTGAGGAAGGGAGAGGTGCAGTTGGAT ATACAGGACATGGTGTTGTATTATGTCCAGACGATGGAGGGGAGGAGGAG GCTCCTTTTTCCCCATCTCAGCCGGCAGAGCGGGCGTCACATCACCTCCT ACGTCAGTGTCGTGGATGTCTCTCACTTTGGTCCACAGCATTTCGGTCGG CACGCCCTCTCCTTCCTCGCGGCCATTGGCGCCGTGCATGACGACACCTA TTCCGATCTGGTCAAGTCAATGTATATTATCAACGCGCCGTTCTTCTTCC ATAAAGTATTCCATCTCATTTCATGCATGATGAACCAAGAGCTCAAAGAC CGGCTGAAGGTGCTCAACCGAAAACAGAGTTTGGTAGAATTATCAAAAAT CATGCCGAGCGATGTAGCGCAGGCCATCGTGGAGGGGAATCATGAAAAGG AGAGGGAGGAGGAGAGGAAGTTGCATGCGTTTTTGGATTATGCGGCGAGT AAGGGTCTGCATAAGAGAAGGTGGGGCTTGGAAGATGCATAG back to topprotein sequence of NO07G02560.1 >NO07G02560.1-protein ID=NO07G02560.1-protein|Name=NO07G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=714bp MQLRYMAWTLVGGSIMASQGPLLAAADAPSSTMPSLTGGGVMSTLVSVAH ACTSKEASSSPPPLSSSTLSRWSFLKWRRRSTAPAQKTTPWFIPAEMMQE EVGEGRGGGTTAAAMQEEEGKELDAPIMMSFGMTEKDNISTTTTTRFGSS MLELCNSSSSSSSSSGGMADELQGTAKKAIADVRALVDNTEAHIETEETA EEEACAAAATEASAAAAVTEAAARAAAPASPTPTTLTSFLKPRTRNAAAT KWMISDDEDSIPCGRSLSSALSVIGGGLPLRRGGSTMGSATAASSSFPSV ARSMSSTYFSSASTMTKVYHTEETVVQEAREGGPTWASTVTEEEEISIST TATSSSPLSPSSTFLAQDAAVAIEATVCAVAEKAHTAAAAAVVGTTLDED VKRETELAERFHAETARQVEGLTSDQRRALERVREALYGPAVCEKRIRAV DELAVCGDRDAMMLSFLQRKNYDAEVALKSFERVISWRMENEIEDVFEGG RLAREKVEKHRECWPTAFYFTKDKEGDPVFVDRMGILELAKLRKGEVQLD IQDMVLYYVQTMEGRRRLLFPHLSRQSGRHITSYVSVVDVSHFGPQHFGR HALSFLAAIGAVHDDTYSDLVKSMYIINAPFFFHKVFHLISCMMNQELKD RLKVLNRKQSLVELSKIMPSDVAQAIVEGNHEKEREEERKLHAFLDYAAS KGLHKRRWGLEDA* back to topmRNA from alignment at chr7:744098..746665+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G02560.1 ID=NO07G02560.1|Name=NO07G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2568bp|location=Sequence derived from alignment at chr7:744098..746665+ (Nannochloropsis oceanica) ATGCAGCTCCGATACATGGCCTGGACCCTTGTTGGGGGCTCCATCATGGC
CAGCCAGGGACCCTTATTAGCTGCGGCGGATGCCCCTTCTTCGACCATGC
CCTCCTTGACAGGGGGCGGGGTGATGTCAACCCTCGTCTCGGTCGCGCAT
GCATGTACAAGTAAGGAGGCATCGTCGTCGCCGCCGCCGTTGTCATCGTC
CACCTTATCACGATGGTCCTTTCTTAAGTGGCGAAGAAGATCTACGGCAC
CTGCGCAAAAGACAACGCCGTGGTTTATCCCTGCTGAAATGATGCAAGAG
GAGGTCGGAGAGGGAAGAGGCGGGGGAACAACAGCAGCAGCAATGCAAGA
GGAAGAAGGAAAAGAGCTTGACGCACCAATAATGATGTCTTTTGGTATGA
CGGAAAAAGATAATATCTCAACGACGACGACCACTCGGTTTGGAAGCAGC
ATGCTGGAGTTGTGTAACAGCAGCAGCAGCAGCAGCAGCAGCAGTGGCGG
GATGGCAGACGAATTGCAGGGGACTGCCAAAAAGGCGATTGCCGACGTTC
GAGCTCTAGTAGACAACACCGAGGCCCACATAGAGACAGAGGAAACGGCG
GAGGAAGAGGCCTGTGCAGCAGCAGCGACGGAAGCCTCTGCAGCAGCAGC
AGTGACGGAAGCTGCTGCACGAGCGGCTGCTCCTGCTTCTCCAACACCAA
CAACGCTGACATCCTTTCTTAAGCCCAGGACGCGAAACGCCGCGGCAACC
AAATGGATGATTTCTGATGACGAGGATTCCATCCCGTGCGGTCGTTCGCT
GTCGTCTGCATTGAGTGTGATAGGTGGTGGATTACCTCTACGAAGGGGAG
GGAGCACGATGGGATCTGCCACCGCCGCCTCCTCCTCCTTTCCCTCTGTC
GCCCGTTCTATGTCCAGCACATATTTTAGCTCTGCCAGCACAATGACCAA
GGTGTATCATACTGAGGAGACGGTGGTGCAGGAAGCGAGGGAGGGAGGGC
CGACGTGGGCGAGCACCGTTACCGAGGAGGAGGAGATTTCCATTTCGACG
ACCGCTACATCATCCTCCCCTCTCTCCCCCTCTTCTACTTTCCTTGCTCA
AGATGCAGCAGTGGCTATAGAGGCAACTGTATGTGCAGTTGCAGAAAAGG
CGCACACTGCTGCTGCTGCTGCTGTTGTTGGCACCACTCTCGACGAAGAC
GTCAAACGTGAGACAGAGCTGGCAGAGCGATTCCACGCCGAGACGGCGAG
GCAGGTGGAGGGCCTGACGTCGGACCAGAGGAGAGCATTGGAAAGAGTCA
GAGAGGCATTGTACGGCCCAGCTGTGTGTGAGAAGAGGATAAGAGCAGTG
GACGAGCTGGCGGTGTGCGGGGACCGAGATGCGATGATGTTGTCGTTTTT
GCAACGAAAGAATTATGATGCGGAGGTGGCTCTCAAGAGTTTTGAGAGAG
TTATCAGCTGGAGAATGGAAAATGAGATTGAGGATGTTTTTGAGGGAGGG
CGGCTGGCGCGGGAGAAGGTGGAGAAGCATCGGGAGTGTTGGCCAACGGC
ATTCTATTTCACAAAGGACAAGGAGGGGGACCCAGTGTTTGTGGACCGAA
TGGGGATTTTGGAACTGGCAAAGCTGAGGAAGGGAGAGGTGCAGTTGGAT
ATACAGGACATGGTGTTGTATTATGTCCAGACGATGGAGGGGAGGAGGAG
GTGAGGGAGAGAGGGAGGGAGGGAGGCAGAAGGGGGGAGAGGAGATTGTC
ATCTGGTCTGATTCTGTCGACGCTGCCGAACCTCAACAGTCCTCCCCCCC
ACGATGTACCACATACTCGCCCCCCACCCCCCCCATACGCATTTGTCTCG
TCTCATGACAATCGACGGAGCGGGCGTATCCTTACCCTGCACGTCACTTT
CGCGGGCGTTTCCAACTGTGGTCTCACACCCTCCTTCCCTCTCTTCATCC
CTCCCTGTCTGCTGTCTCTACAGGCTCCTTTTTCCCCATCTCAGCCGGCA
GAGCGGGCGTCACATCACCTCCTACGTCAGTGTCGTGGATGTCTCTCACT
TTGGTCCACAGCATTTCGGTCGGCACGCCCTCTCCTTCCTCGCGGCCATT
GGCGCCGTGCATGACGACACCTATTCCGATCTGGTCAAGTCAATGTATGT
GTGTGTTTTGTCTGTTCCTGTGACTACTTTATCTTTCCTTTTTTCTTCTC
TGTTGCTTCTTTTATGCATGGGGGTTTTGGTGGCCAATTGCAAGCAAATA
TTTCCTCCATTCTTTCTTTCCTCCTTCCCTCCCCCCCCCCACCACAGGTA
TATTATCAACGCGCCGTTCTTCTTCCATAAAGTATTCCATCTCATTTCAT
GCATGATGAACCAAGAGCTCAAAGACCGGCTGAAGGTGCTCAACCGAAAA
CAGAGTTTGGTAGAATTATCAAAAATCATGCCGAGCGATGTAGCGCAGGC
CATCGTGGAGGGGAATCATGAAAAGGAGAGGGAGGAGGAGAGGAAGTTGC
ATGCGTTTTTGGATTATGCGGCGAGTAAGGGTCTGCATAAGAGAAGGTGG
GGCTTGGAAGATGCATAG back to topCoding sequence (CDS) from alignment at chr7:744098..746665+ >NO07G02560.1 ID=NO07G02560.1|Name=NO07G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=2142bp|location=Sequence derived from alignment at chr7:744098..746665+ (Nannochloropsis oceanica) ATGCAGCTCCGATACATGGCCTGGACCCTTGTTGGGGGCTCCATCATGGC CAGCCAGGGACCCTTATTAGCTGCGGCGGATGCCCCTTCTTCGACCATGC CCTCCTTGACAGGGGGCGGGGTGATGTCAACCCTCGTCTCGGTCGCGCAT GCATGTACAAGTAAGGAGGCATCGTCGTCGCCGCCGCCGTTGTCATCGTC CACCTTATCACGATGGTCCTTTCTTAAGTGGCGAAGAAGATCTACGGCAC CTGCGCAAAAGACAACGCCGTGGTTTATCCCTGCTGAAATGATGCAAGAG GAGGTCGGAGAGGGAAGAGGCGGGGGAACAACAGCAGCAGCAATGCAAGA GGAAGAAGGAAAAGAGCTTGACGCACCAATAATGATGTCTTTTGGTATGA CGGAAAAAGATAATATCTCAACGACGACGACCACTCGGTTTGGAAGCAGC ATGCTGGAGTTGTGTAACAGCAGCAGCAGCAGCAGCAGCAGCAGTGGCGG GATGGCAGACGAATTGCAGGGGACTGCCAAAAAGGCGATTGCCGACGTTC GAGCTCTAGTAGACAACACCGAGGCCCACATAGAGACAGAGGAAACGGCG GAGGAAGAGGCCTGTGCAGCAGCAGCGACGGAAGCCTCTGCAGCAGCAGC AGTGACGGAAGCTGCTGCACGAGCGGCTGCTCCTGCTTCTCCAACACCAA CAACGCTGACATCCTTTCTTAAGCCCAGGACGCGAAACGCCGCGGCAACC AAATGGATGATTTCTGATGACGAGGATTCCATCCCGTGCGGTCGTTCGCT GTCGTCTGCATTGAGTGTGATAGGTGGTGGATTACCTCTACGAAGGGGAG GGAGCACGATGGGATCTGCCACCGCCGCCTCCTCCTCCTTTCCCTCTGTC GCCCGTTCTATGTCCAGCACATATTTTAGCTCTGCCAGCACAATGACCAA GGTGTATCATACTGAGGAGACGGTGGTGCAGGAAGCGAGGGAGGGAGGGC CGACGTGGGCGAGCACCGTTACCGAGGAGGAGGAGATTTCCATTTCGACG ACCGCTACATCATCCTCCCCTCTCTCCCCCTCTTCTACTTTCCTTGCTCA AGATGCAGCAGTGGCTATAGAGGCAACTGTATGTGCAGTTGCAGAAAAGG CGCACACTGCTGCTGCTGCTGCTGTTGTTGGCACCACTCTCGACGAAGAC GTCAAACGTGAGACAGAGCTGGCAGAGCGATTCCACGCCGAGACGGCGAG GCAGGTGGAGGGCCTGACGTCGGACCAGAGGAGAGCATTGGAAAGAGTCA GAGAGGCATTGTACGGCCCAGCTGTGTGTGAGAAGAGGATAAGAGCAGTG GACGAGCTGGCGGTGTGCGGGGACCGAGATGCGATGATGTTGTCGTTTTT GCAACGAAAGAATTATGATGCGGAGGTGGCTCTCAAGAGTTTTGAGAGAG TTATCAGCTGGAGAATGGAAAATGAGATTGAGGATGTTTTTGAGGGAGGG CGGCTGGCGCGGGAGAAGGTGGAGAAGCATCGGGAGTGTTGGCCAACGGC ATTCTATTTCACAAAGGACAAGGAGGGGGACCCAGTGTTTGTGGACCGAA TGGGGATTTTGGAACTGGCAAAGCTGAGGAAGGGAGAGGTGCAGTTGGAT ATACAGGACATGGTGTTGTATTATGTCCAGACGATGGAGGGGAGGAGGAG GCTCCTTTTTCCCCATCTCAGCCGGCAGAGCGGGCGTCACATCACCTCCT ACGTCAGTGTCGTGGATGTCTCTCACTTTGGTCCACAGCATTTCGGTCGG CACGCCCTCTCCTTCCTCGCGGCCATTGGCGCCGTGCATGACGACACCTA TTCCGATCTGGTCAAGTCAATGTATATTATCAACGCGCCGTTCTTCTTCC ATAAAGTATTCCATCTCATTTCATGCATGATGAACCAAGAGCTCAAAGAC CGGCTGAAGGTGCTCAACCGAAAACAGAGTTTGGTAGAATTATCAAAAAT CATGCCGAGCGATGTAGCGCAGGCCATCGTGGAGGGGAATCATGAAAAGG AGAGGGAGGAGGAGAGGAAGTTGCATGCGTTTTTGGATTATGCGGCGAGT AAGGGTCTGCATAAGAGAAGGTGGGGCTTGGAAGATGCATAG back to top
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