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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:717033..718986 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G02480.2 vs.
Match: EWM27130.1 (Protein of unknown function DUF829, TMEM53 [Nannochloropsis gaditana]) HSP 1 Score: 243.4 bits (620), Expect = 1.000e-60 Identity = 118/191 (61.78%), Postives = 142/191 (74.35%), Query Frame = 0
Query: 135 DAAVPFNDGPNVGRFRVTKRAALRIVPVPAEGETPRAIESRD--KVKLVVVLLGWLGCQDRHLKKYAEMYHESMNCEVVLRHTVPASRLLRRKQWGAVRAAEEIMTLIPLFFPDAKVVVHYFSNGGCFVHRRMLLLQNGHYRQGDARRFCCDPEPPTDDYQFPQLAGTIFDSCPVAADAEAGARAVSARVQ 324
D F DGP++GRFRVTK L I P E + E + KVK VV+L GWL CQD+HL+KYA +YHE C+VVLR+TVPA +LRRKQ VR AE+IM+LIPLFFP AKV+VHYFSNGGCFVHRR+LLL NGHYRQ +RRFCCD PP +++ F QLA TIFDSCP AADA+ GA+A+SA ++
Sbjct: 2 DEDAVFEDGPSIGRFRVTKLKGLNICPAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFFPRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQ-RSRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALR 191
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G02480.2 ID=NO07G02480.2|Name=NO07G02480.2|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp CTATCACCTGCAAGCCTGGAATTTAGCCCCTGATGTTGTTCCGGCAAGTA AAGTACGTTCATCCTCCAACTCACACGTATTGTATAATCACGAACCGGTA CGCCGCCCACCAGCAGATGCAAGAACACGACGCAATATCGGTCGATTCCG GCAAAATCCATGATGACGACAGCCGCAGGCTTATCCCTCCCAAACTTCTT GTCTCCACAATGCTGTCATCAGCCGGTACCAGCACTTATTCCAAGGTAGC AGCGACAGCAGCTGACAGCAGCGCGCCGAGCTCTGTGGACCAATTGATGC ACAGTCGATCTTTTATTTCCCACTCAGGGGTTCCAATGTTCGTGGATGGG ATAGACGACATTGAGAAGATGGAAAAGCTCGCCGACTTGGATGCTAACAA TTCTTGCCTCACGATCCCCGCGACACGTTTTCCGGACGCGGCCGTGCCGT TCAATGACGGTCCTAATGTGGGCCGCTTCCGTGTCACGAAGCGTGCGGCC TTAAGAATCGTACCTGTGCCTGCAGAAGGGGAGACACCACGCGCCATAGA GAGCCGTGACAAGGTCAAGCTTGTGGTGGTCTTGCTGGGGTGGTTGGGCT GCCAAGACAGGCATTTGAAAAAATATGCGGAGATGTATCATGAGAGTATG AACTGCGAGGTGGTGTTGCGGCACACGGTCCCCGCGAGCAGGCTGCTGCG TCGGAAGCAATGGGGAGCCGTCCGAGCTGCCGAGGAGATAATGACATTGA TCCCTCTCTTTTTCCCCGATGCCAAAGTGGTCGTGCATTATTTTTCAAAT GGTGGCTGTTTTGTACATCGTAGAATGCTGTTACTGCAGAACGGGCATTA TCGCCAGGGAGATGCAAGGCGGTTCTGCTGTGATCCTGAACCACCCACGG ACGACTACCAGTTCCCTCAGCTTGCAGGCACAATTTTTGATAGCTGCCCT GTCGCCGCGGATGCCGAGGCTGGGGCCAGGGCCGTAAGCGCACGTGTGCA GGTGTGTAACTTGGTTTGGAATGCGGGAGGGGGGAAGGGGTTGAATAAAT AGAGAGAAAGGAGGGGGTTGAACGATTAGACGGGGATGAAGAGTGAAGCC TTCGGAGGCAGTGACGAAATTTGTTTCAACTCACTTCTGTCACCTCGAAT GGTTGCGTACTCCTTTTCAGTCGCCGATTATCCGCTTGCTCATGTACGCG ACTATTCGCTTCGGGCTTGAGATTTACGGGATCGCACAATCATGGCGTTA TGAGCAGAAATATATCGAGCACATTGAAAATGATCATACCCTCGTTCCCA GCCTCTATATCTTTTCGGAAGACGACACCATTACTGACCCTGCTTTGGTT GAAAGAGTGGTGGCCAAGCGGAAGGCCTACCTTACCTCTCAAGGTTTGCC CGCTGATGTCATGCTCGAGACATGGAAGATCACAGATCCTTCACTTCATG TTTGTCATTACGCGCGTTATCCGATAGAGTACCAAAAAAAAATAAAAGAT TTTCTGCAGAGACAAGGCCTAATCCCTTGAAGAGCGTAGATGAAGGATTC AGAATGCTGCCAATAGTTCAGCAGTGAATGCCTTGCCCTCCAATTGTAGA CAAAGTAAATCACATTCGGTGCCTTTTTTAATTAAAGCGGCGATTGAAGC GCTCGATCGAGTGAACGTCTTCGATAAGCAAGCTTGATGGATCGAAGAAA ATTGGTTCATGCCCGTCGTTCCTTT back to topprotein sequence of NO07G02480.2 >NO07G02480.2-protein ID=NO07G02480.2-protein|Name=NO07G02480.2|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp MLFRQVKYVHPPTHTYCIITNRYAAHQQMQEHDAISVDSGKIHDDDSRRL IPPKLLVSTMLSSAGTSTYSKVAATAADSSAPSSVDQLMHSRSFISHSGV PMFVDGIDDIEKMEKLADLDANNSCLTIPATRFPDAAVPFNDGPNVGRFR VTKRAALRIVPVPAEGETPRAIESRDKVKLVVVLLGWLGCQDRHLKKYAE MYHESMNCEVVLRHTVPASRLLRRKQWGAVRAAEEIMTLIPLFFPDAKVV VHYFSNGGCFVHRRMLLLQNGHYRQGDARRFCCDPEPPTDDYQFPQLAGT IFDSCPVAADAEAGARAVSARVQVCNLVWNAGGGKGLNK* back to topmRNA from alignment at chr7:717033..718986+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G02480.2 ID=NO07G02480.2|Name=NO07G02480.2|organism=Nannochloropsis oceanica|type=mRNA|length=1954bp|location=Sequence derived from alignment at chr7:717033..718986+ (Nannochloropsis oceanica) CTATCACCTGCAAGCCTGGAATTTAGCCCCTGATGTTGTTCCGGCAAGTA
AAGTACGTTCATCCTCCAACTCACACGTATTGTATAATCACGAACCGGTA
CGCCGCCCACCAGCAGATGCAAGAACACGACGCAATATCGGTCGATTCCG
GCAAAATCCATGATGACGACAGCCGCAGGCTTATCCCTCCCAAACTTCTT
GTCTCCACAATGCTGTCATCAGCCGGTACCAGCACTTATTCCAAGGTAGC
AGCGACAGCAGCTGACAGCAGCGCGCCGAGCTCTGTGGACCAATTGATGC
ACAGTCGATCTTTTATTTCCCACTCAGGGGTTCCAATGTTCGTGGATGGG
ATAGGTGAGTGCCAGCTCAAAGTCAAGCTCCCTTTCAATGCAATACACGT
CTCAATCATGTCAGGGCTTGCGTCATTCCATCCTCCCGGATCTCGCACTG
CGCCGACTTACTATCAATCCTTATCGCCCGAGCTCGTAGACGAAATCAAC
GGCATCCTTCCTTGCCCAAATCTCCCCGTGCATTTTTATCGATCCACCCG
CCATCTTCACAATTCCGTTCTGTCTCCCCCCAGACGACATTGAGAAGATG
GAAAAGCTCGCCGACTTGGATGCTAACAATTCTTGCCTCACGATCCCCGC
GACACGTTTTCCGGACGCGGCCGTGCCGTTCAATGACGGTCCTAATGTGG
GCCGCTTCCGTGTCACGAAGCGTGCGGCCTTAAGAATCGTACCTGTGCCT
GCAGAAGGGGAGACACCACGCGCCATAGAGAGCCGTGACAAGGTCAAGCT
TGTGGTGGTCTTGCTGGGGTGGTTGGGCTGCCAAGACAGGCATTTGAAAA
AATATGCGGAGATGTATCATGAGAGTATGAACTGCGAGGTGGTGTTGCGG
CACACGGTCCCCGCGAGCAGGCTGCTGCGTCGGAAGCAATGGGGAGCCGT
CCGAGCTGCCGAGGAGATAATGACATTGATCCCTCTCTTTTTCCCCGATG
CCAAAGTGGTCGTGCATTATTTTTCAAATGGTGGCTGTTTTGTACATCGT
AGAATGCTGTTACTGCAGAACGGGCATTATCGCCAGGGAGATGCAAGGCG
GTTCTGCTGTGATCCTGAACCACCCACGGACGACTACCAGTTCCCTCAGC
TTGCAGGCACAATTTTTGATAGCTGCCCTGTCGCCGCGGATGCCGAGGCT
GGGGCCAGGGCCGTAAGCGCACGTGTGCAGGTGTGTAACTTGGTTTGGAA
TGCGGGAGGGGGGAAGGGGTTGAATAAATAGAGAGAAAGGAGGGGGTTGA
ACGATTAGACGGGGATGAAGAGTGAAGCCTTCGGAGGCAGTGACGAAATT
TGTTTCAACTCACTTCTGTCACCTCGAATGGTTGCGTACTCCTTTTCAGT
CGCCGATTATCCGCTTGCTCATGTACGCGACTATTCGCTTCGGGCTTGAG
ATTTACGGGATCGCACAATCATGGCGTTATGAGCAGAAATATATCGAGCA
CATTGAAAATGATCATACCCTCGTTCCCAGCCTCTATATCTTTTCGGAAG
ACGACACCATTACTGACCCTGCTTTGGTTGAAAGAGTGGTGGCCAAGCGG
AAGGCCTACCTTACCTCTCAAGGTTTGCCCGCTGATGTCATGCTCGAGAC
ATGGAAGATCACAGATCCTTCACTTCATGTTTGTCATTACGCGCGTTATC
CGATAGAGTACCAAAAAAAAATAAAAGATTTTCTGCAGAGACAAGGCCTA
ATCCCTTGAAGAGCGTAGATGAAGGATTCAGAATGCTGCCAATAGTTCAG
CAGTGAATGCCTTGCCCTCCAATTGTAGACAAAGTAAATCACATTCGGTG
CCTTTTTTAATTAAAGCGGCGATTGAAGCGCTCGATCGAGTGAACGTCTT
CGATAAGCAAGCTTGATGGATCGAAGAAAATTGGTTCATGCCCGTCGTTC
CTTT back to topCoding sequence (CDS) from alignment at chr7:717033..718986+ >NO07G02480.2 ID=NO07G02480.2|Name=NO07G02480.2|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at chr7:717033..718986+ (Nannochloropsis oceanica) ATGTTGTTCCGGCAAGTAAAGTACGTTCATCCTCCAACTCACACGTATTG TATAATCACGAACCGGTACGCCGCCCACCAGCAGATGCAAGAACACGACG CAATATCGGTCGATTCCGGCAAAATCCATGATGACGACAGCCGCAGGCTT ATCCCTCCCAAACTTCTTGTCTCCACAATGCTGTCATCAGCCGGTACCAG CACTTATTCCAAGGTAGCAGCGACAGCAGCTGACAGCAGCGCGCCGAGCT CTGTGGACCAATTGATGCACAGTCGATCTTTTATTTCCCACTCAGGGGTT CCAATGTTCGTGGATGGGATAGACGACATTGAGAAGATGGAAAAGCTCGC CGACTTGGATGCTAACAATTCTTGCCTCACGATCCCCGCGACACGTTTTC CGGACGCGGCCGTGCCGTTCAATGACGGTCCTAATGTGGGCCGCTTCCGT GTCACGAAGCGTGCGGCCTTAAGAATCGTACCTGTGCCTGCAGAAGGGGA GACACCACGCGCCATAGAGAGCCGTGACAAGGTCAAGCTTGTGGTGGTCT TGCTGGGGTGGTTGGGCTGCCAAGACAGGCATTTGAAAAAATATGCGGAG ATGTATCATGAGAGTATGAACTGCGAGGTGGTGTTGCGGCACACGGTCCC CGCGAGCAGGCTGCTGCGTCGGAAGCAATGGGGAGCCGTCCGAGCTGCCG AGGAGATAATGACATTGATCCCTCTCTTTTTCCCCGATGCCAAAGTGGTC GTGCATTATTTTTCAAATGGTGGCTGTTTTGTACATCGTAGAATGCTGTT ACTGCAGAACGGGCATTATCGCCAGGGAGATGCAAGGCGGTTCTGCTGTG ATCCTGAACCACCCACGGACGACTACCAGTTCCCTCAGCTTGCAGGCACA ATTTTTGATAGCTGCCCTGTCGCCGCGGATGCCGAGGCTGGGGCCAGGGC CGTAAGCGCACGTGTGCAGGTGTGTAACTTGGTTTGGAATGCGGGAGGGG GGAAGGGGTTGAATAAATAG back to top
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