NO07G02480.1, NO07G02480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02480.1
Unique NameNO07G02480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1556
Alignment locationchr7:717033..718986 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:717033..718986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02480.1 vs.
Match: EWM27130.1 (Protein of unknown function DUF829, TMEM53 [Nannochloropsis gaditana])

HSP 1 Score: 417.9 bits (1073), Expect = 3.800e-113
Identity = 196/309 (63.43%), Postives = 239/309 (77.35%), Query Frame = 0 
Query:  135 DAAVPFNDGPNVGRFRVTKRAALRIVPVPAEGETPRAIESRD--KVKLVVVLLGWLGCQDRHLKKYAEMYHESMNCEVVLRHTVPASRLLRRKQWGAVRAAEEIMTLIPLFFPDAKVVVHYFSNGGCFVHRRMLLLQNGHYRQGDARRFCCDPEPPTDDYQFPQLAGTIFDSCPVAADAEAGARAVSARVQSPIIRLLMYATIRFGLEIYGIAQSWRYEQKYIEHIENDHTLVPSLYIFSEDDTITDPALVERVVAKRKAYLTSQGLPADVMLETWKITDPSLHVCHYARYPIEYQKKIKDFLQRQGLI 442
            D    F DGP++GRFRVTK   L I P   E     + E  +  KVK VV+L GWL CQD+HL+KYA +YHE   C+VVLR+TVPA  +LRRKQ   VR AE+IM+LIPLFFP AKV+VHYFSNGGCFVHRR+LLL NGHYRQ  +RRFCCD  PP +++ F QLA TIFDSCP AADA+ GA+A+SA +++P  RL  Y TIRFGLE+YG+AQ WRYE+KY+EHIENDH L+PSLYI+S+DDTITD ALVER+V KRKAY TSQG+ ADVM+ TWK+++PS HVCHYA +P  Y+ ++  FLQ  GL+
Sbjct:    2 DEDAVFEDGPSIGRFRVTKLKGLNICPAIDENGASASSEEENGYKVKFVVLLFGWLTCQDKHLRKYAALYHEHFACKVVLRYTVPAGNVLRRKQSEVVRTAEDIMSLIPLFFPRAKVLVHYFSNGGCFVHRRLLLLLNGHYRQR-SRRFCCDRRPPNEEHSFSQLAATIFDSCPAAADAQTGAKALSAALRAPFARLATYITIRFGLEVYGLAQCWRYERKYLEHIENDHLLIPSLYIYSDDDTITDAALVERIVTKRKAYFTSQGIVADVMVRTWKVSEPSSHVCHYAHHPDAYRAEVGKFLQAHGLL 309
The following BLAST results are available for this feature:
BLAST of NO07G02480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27130.13.800e-11363.43Protein of unknown function DUF829, TMEM53 [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02480NO07G02480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02480.1NO07G02480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02480.1.cds1NO07G02480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02480.1.cds2NO07G02480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02480.1.cds3NO07G02480.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02480.1 ID=NO07G02480.1|Name=NO07G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1556bp
CTATCACCTGCAAGCCTGGAATTTAGCCCCTGATGTTGTTCCGGCAAGTA
AAGTACGTTCATCCTCCAACTCACACGTATTGTATAATCACGAACCGGTA
CGCCGCCCACCAGCAGATGCAAGAACACGACGCAATATCGGTCGATTCCG
GCAAAATCCATGATGACGACAGCCGCAGGCTTATCCCTCCCAAACTTCTT
GTCTCCACAATGCTGTCATCAGCCGGTACCAGCACTTATTCCAAGGTAGC
AGCGACAGCAGCTGACAGCAGCGCGCCGAGCTCTGTGGACCAATTGATGC
ACAGTCGATCTTTTATTTCCCACTCAGGGGTTCCAATGTTCGTGGATGGG
ATAGACGACATTGAGAAGATGGAAAAGCTCGCCGACTTGGATGCTAACAA
TTCTTGCCTCACGATCCCCGCGACACGTTTTCCGGACGCGGCCGTGCCGT
TCAATGACGGTCCTAATGTGGGCCGCTTCCGTGTCACGAAGCGTGCGGCC
TTAAGAATCGTACCTGTGCCTGCAGAAGGGGAGACACCACGCGCCATAGA
GAGCCGTGACAAGGTCAAGCTTGTGGTGGTCTTGCTGGGGTGGTTGGGCT
GCCAAGACAGGCATTTGAAAAAATATGCGGAGATGTATCATGAGAGTATG
AACTGCGAGGTGGTGTTGCGGCACACGGTCCCCGCGAGCAGGCTGCTGCG
TCGGAAGCAATGGGGAGCCGTCCGAGCTGCCGAGGAGATAATGACATTGA
TCCCTCTCTTTTTCCCCGATGCCAAAGTGGTCGTGCATTATTTTTCAAAT
GGTGGCTGTTTTGTACATCGTAGAATGCTGTTACTGCAGAACGGGCATTA
TCGCCAGGGAGATGCAAGGCGGTTCTGCTGTGATCCTGAACCACCCACGG
ACGACTACCAGTTCCCTCAGCTTGCAGGCACAATTTTTGATAGCTGCCCT
GTCGCCGCGGATGCCGAGGCTGGGGCCAGGGCCGTAAGCGCACGTGTGCA
GTCGCCGATTATCCGCTTGCTCATGTACGCGACTATTCGCTTCGGGCTTG
AGATTTACGGGATCGCACAATCATGGCGTTATGAGCAGAAATATATCGAG
CACATTGAAAATGATCATACCCTCGTTCCCAGCCTCTATATCTTTTCGGA
AGACGACACCATTACTGACCCTGCTTTGGTTGAAAGAGTGGTGGCCAAGC
GGAAGGCCTACCTTACCTCTCAAGGTTTGCCCGCTGATGTCATGCTCGAG
ACATGGAAGATCACAGATCCTTCACTTCATGTTTGTCATTACGCGCGTTA
TCCGATAGAGTACCAAAAAAAAATAAAAGATTTTCTGCAGAGACAAGGCC
TAATCCCTTGAAGAGCGTAGATGAAGGATTCAGAATGCTGCCAATAGTTC
AGCAGTGAATGCCTTGCCCTCCAATTGTAGACAAAGTAAATCACATTCGG
TGCCTTTTTTAATTAAAGCGGCGATTGAAGCGCTCGATCGAGTGAACGTC
TTCGATAAGCAAGCTTGATGGATCGAAGAAAATTGGTTCATGCCCGTCGT
TCCTTT
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protein sequence of NO07G02480.1

>NO07G02480.1-protein ID=NO07G02480.1-protein|Name=NO07G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=443bp
MLFRQVKYVHPPTHTYCIITNRYAAHQQMQEHDAISVDSGKIHDDDSRRL
IPPKLLVSTMLSSAGTSTYSKVAATAADSSAPSSVDQLMHSRSFISHSGV
PMFVDGIDDIEKMEKLADLDANNSCLTIPATRFPDAAVPFNDGPNVGRFR
VTKRAALRIVPVPAEGETPRAIESRDKVKLVVVLLGWLGCQDRHLKKYAE
MYHESMNCEVVLRHTVPASRLLRRKQWGAVRAAEEIMTLIPLFFPDAKVV
VHYFSNGGCFVHRRMLLLQNGHYRQGDARRFCCDPEPPTDDYQFPQLAGT
IFDSCPVAADAEAGARAVSARVQSPIIRLLMYATIRFGLEIYGIAQSWRY
EQKYIEHIENDHTLVPSLYIFSEDDTITDPALVERVVAKRKAYLTSQGLP
ADVMLETWKITDPSLHVCHYARYPIEYQKKIKDFLQRQGLIP*
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mRNA from alignment at chr7:717033..718986+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02480.1 ID=NO07G02480.1|Name=NO07G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1954bp|location=Sequence derived from alignment at chr7:717033..718986+ (Nannochloropsis oceanica)
CTATCACCTGCAAGCCTGGAATTTAGCCCCTGATGTTGTTCCGGCAAGTA
AAGTACGTTCATCCTCCAACTCACACGTATTGTATAATCACGAACCGGTA
CGCCGCCCACCAGCAGATGCAAGAACACGACGCAATATCGGTCGATTCCG
GCAAAATCCATGATGACGACAGCCGCAGGCTTATCCCTCCCAAACTTCTT
GTCTCCACAATGCTGTCATCAGCCGGTACCAGCACTTATTCCAAGGTAGC
AGCGACAGCAGCTGACAGCAGCGCGCCGAGCTCTGTGGACCAATTGATGC
ACAGTCGATCTTTTATTTCCCACTCAGGGGTTCCAATGTTCGTGGATGGG
ATAGGTGAGTGCCAGCTCAAAGTCAAGCTCCCTTTCAATGCAATACACGT
CTCAATCATGTCAGGGCTTGCGTCATTCCATCCTCCCGGATCTCGCACTG
CGCCGACTTACTATCAATCCTTATCGCCCGAGCTCGTAGACGAAATCAAC
GGCATCCTTCCTTGCCCAAATCTCCCCGTGCATTTTTATCGATCCACCCG
CCATCTTCACAATTCCGTTCTGTCTCCCCCCAGACGACATTGAGAAGATG
GAAAAGCTCGCCGACTTGGATGCTAACAATTCTTGCCTCACGATCCCCGC
GACACGTTTTCCGGACGCGGCCGTGCCGTTCAATGACGGTCCTAATGTGG
GCCGCTTCCGTGTCACGAAGCGTGCGGCCTTAAGAATCGTACCTGTGCCT
GCAGAAGGGGAGACACCACGCGCCATAGAGAGCCGTGACAAGGTCAAGCT
TGTGGTGGTCTTGCTGGGGTGGTTGGGCTGCCAAGACAGGCATTTGAAAA
AATATGCGGAGATGTATCATGAGAGTATGAACTGCGAGGTGGTGTTGCGG
CACACGGTCCCCGCGAGCAGGCTGCTGCGTCGGAAGCAATGGGGAGCCGT
CCGAGCTGCCGAGGAGATAATGACATTGATCCCTCTCTTTTTCCCCGATG
CCAAAGTGGTCGTGCATTATTTTTCAAATGGTGGCTGTTTTGTACATCGT
AGAATGCTGTTACTGCAGAACGGGCATTATCGCCAGGGAGATGCAAGGCG
GTTCTGCTGTGATCCTGAACCACCCACGGACGACTACCAGTTCCCTCAGC
TTGCAGGCACAATTTTTGATAGCTGCCCTGTCGCCGCGGATGCCGAGGCT
GGGGCCAGGGCCGTAAGCGCACGTGTGCAGGTGTGTAACTTGGTTTGGAA
TGCGGGAGGGGGGAAGGGGTTGAATAAATAGAGAGAAAGGAGGGGGTTGA
ACGATTAGACGGGGATGAAGAGTGAAGCCTTCGGAGGCAGTGACGAAATT
TGTTTCAACTCACTTCTGTCACCTCGAATGGTTGCGTACTCCTTTTCAGT
CGCCGATTATCCGCTTGCTCATGTACGCGACTATTCGCTTCGGGCTTGAG
ATTTACGGGATCGCACAATCATGGCGTTATGAGCAGAAATATATCGAGCA
CATTGAAAATGATCATACCCTCGTTCCCAGCCTCTATATCTTTTCGGAAG
ACGACACCATTACTGACCCTGCTTTGGTTGAAAGAGTGGTGGCCAAGCGG
AAGGCCTACCTTACCTCTCAAGGTTTGCCCGCTGATGTCATGCTCGAGAC
ATGGAAGATCACAGATCCTTCACTTCATGTTTGTCATTACGCGCGTTATC
CGATAGAGTACCAAAAAAAAATAAAAGATTTTCTGCAGAGACAAGGCCTA
ATCCCTTGAAGAGCGTAGATGAAGGATTCAGAATGCTGCCAATAGTTCAG
CAGTGAATGCCTTGCCCTCCAATTGTAGACAAAGTAAATCACATTCGGTG
CCTTTTTTAATTAAAGCGGCGATTGAAGCGCTCGATCGAGTGAACGTCTT
CGATAAGCAAGCTTGATGGATCGAAGAAAATTGGTTCATGCCCGTCGTTC
CTTT
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Coding sequence (CDS) from alignment at chr7:717033..718986+

>NO07G02480.1 ID=NO07G02480.1|Name=NO07G02480.1|organism=Nannochloropsis oceanica|type=CDS|length=1329bp|location=Sequence derived from alignment at chr7:717033..718986+ (Nannochloropsis oceanica)
ATGTTGTTCCGGCAAGTAAAGTACGTTCATCCTCCAACTCACACGTATTG
TATAATCACGAACCGGTACGCCGCCCACCAGCAGATGCAAGAACACGACG
CAATATCGGTCGATTCCGGCAAAATCCATGATGACGACAGCCGCAGGCTT
ATCCCTCCCAAACTTCTTGTCTCCACAATGCTGTCATCAGCCGGTACCAG
CACTTATTCCAAGGTAGCAGCGACAGCAGCTGACAGCAGCGCGCCGAGCT
CTGTGGACCAATTGATGCACAGTCGATCTTTTATTTCCCACTCAGGGGTT
CCAATGTTCGTGGATGGGATAGACGACATTGAGAAGATGGAAAAGCTCGC
CGACTTGGATGCTAACAATTCTTGCCTCACGATCCCCGCGACACGTTTTC
CGGACGCGGCCGTGCCGTTCAATGACGGTCCTAATGTGGGCCGCTTCCGT
GTCACGAAGCGTGCGGCCTTAAGAATCGTACCTGTGCCTGCAGAAGGGGA
GACACCACGCGCCATAGAGAGCCGTGACAAGGTCAAGCTTGTGGTGGTCT
TGCTGGGGTGGTTGGGCTGCCAAGACAGGCATTTGAAAAAATATGCGGAG
ATGTATCATGAGAGTATGAACTGCGAGGTGGTGTTGCGGCACACGGTCCC
CGCGAGCAGGCTGCTGCGTCGGAAGCAATGGGGAGCCGTCCGAGCTGCCG
AGGAGATAATGACATTGATCCCTCTCTTTTTCCCCGATGCCAAAGTGGTC
GTGCATTATTTTTCAAATGGTGGCTGTTTTGTACATCGTAGAATGCTGTT
ACTGCAGAACGGGCATTATCGCCAGGGAGATGCAAGGCGGTTCTGCTGTG
ATCCTGAACCACCCACGGACGACTACCAGTTCCCTCAGCTTGCAGGCACA
ATTTTTGATAGCTGCCCTGTCGCCGCGGATGCCGAGGCTGGGGCCAGGGC
CGTAAGCGCACGTGTGCAGTCGCCGATTATCCGCTTGCTCATGTACGCGA
CTATTCGCTTCGGGCTTGAGATTTACGGGATCGCACAATCATGGCGTTAT
GAGCAGAAATATATCGAGCACATTGAAAATGATCATACCCTCGTTCCCAG
CCTCTATATCTTTTCGGAAGACGACACCATTACTGACCCTGCTTTGGTTG
AAAGAGTGGTGGCCAAGCGGAAGGCCTACCTTACCTCTCAAGGTTTGCCC
GCTGATGTCATGCTCGAGACATGGAAGATCACAGATCCTTCACTTCATGT
TTGTCATTACGCGCGTTATCCGATAGAGTACCAAAAAAAAATAAAAGATT
TTCTGCAGAGACAAGGCCTAATCCCTTGA
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Synonyms
Publications