NO07G01950.1, NO07G01950.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G01950.1
Unique Name	NO07G01950.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1341
Alignment location	chr7:569015..570964 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:569015..570964 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO07G01950.1 vs.
Match: EWM27227.1 (tubby-like protein [Nannochloropsis gaditana])

HSP 1 Score: 496.1 bits (1276), Expect = 8.600e-137
Identity = 239/341 (70.09%), Postives = 276/341 (80.94%), Query Frame = 0

Query:    1 MADMHSTSAAGELEELMQDTVKFIGGVADKLWTAGTSAKDMLLDGEKKGDGNKSKERSSLGFYECNGVMETKSFEDLDMLESGHAREYITDECLLPCPTLKRWSTCNVVKDGKTAFRMYLDETHTRFMLSAKRVGDSFYISQYESFPDSVDDVPDLYYCAVLRTCSEGHFKLFLNGCEACDRKTDKYTCGSGDRCDDRQLLAEINHSVRRVKEANADMRCLSIKLPKIHEDKQSREVWCPRMNQLRRQVGDLDKAGHVRLMNKLPEWNEALQSLVLRFNKGRVLAPSAKNFLICMMAGQDKREGVLQFGKTRKRRYALDFRHPISPLQAFGICLSLFKWNI 342
            MA  H  SA+GELE L+Q TV   GGVADKLW A +  ++   +  K G  N          ++ N   + K+FEDLD+LESGHAREYIT+ECLLPCPT+K+WSTCNV+K+GK+ FRMYLDE   RF+LSAKRVGDSF+ISQYESFP+S++ VP++  CAVLRTCSEG+FKLFLNGCEACD+K DKYTCGSG   D+RQLLAEINHSV+RVKEANADMRCLS+KLP++HED+Q+R+VWCPRM Q RR      K  H RL NKLPEWNEALQSLVLRFNKGRVLAPSAKNFLIC + GQD  EGVLQFGKTRKRRYALDFRHP+SPLQAFGICLS F WN+
Sbjct:    1 MATQHLASASGELEGLVQSTVNLFGGVADKLWPAKSRNQEKQAEIGKVGALNSEA-------FDSNFKKDIKTFEDLDLLESGHAREYITEECLLPCPTVKKWSTCNVIKNGKSTFRMYLDEAQPRFVLSAKRVGDSFFISQYESFPESINGVPEVSSCAVLRTCSEGYFKLFLNGCEACDKKADKYTCGSGHSFDNRQLLAEINHSVKRVKEANADMRCLSVKLPEVHEDQQTRDVWCPRMEQARRSNNAELKTRHFRLHNKLPEWNEALQSLVLRFNKGRVLAPSAKNFLIC-LDGQDNGEGVLQFGKTRKRRYALDFRHPVSPLQAFGICLSFFNWNV 333

The following BLAST results are available for this feature:

BLAST of NO07G01950.1 vs.

BLAST of NO07G01950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27227.1	8.600e-137	70.09	tubby-like protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G01950	NO07G01950	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G01950.1	NO07G01950.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G01950.1.cds1	NO07G01950.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01950.1.cds2	NO07G01950.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01950.1.cds3	NO07G01950.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01950.1.cds4	NO07G01950.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:569015..570964-
coding sequence from alignment at chr7:569015..570964-

mRNA sequence

>NO07G01950.1 ID=NO07G01950.1|Name=NO07G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp
ACAGAGCAAGCGGGCCTCTTCTTGGCCTTGCTTTGGAGGAGGACCGAGGA
GGACGGGACGCACACTTGTGTAAACAGCCATCAGGAGCACTACAACCGGG
AATAGAAATACATAACATGGCAGACATGCACTCGACATCGGCAGCTGGTG
AGCTCGAAGAGCTGATGCAGGACACAGTCAAGTTTATCGGTGGTGTGGCA
GACAAGCTTTGGACTGCGGGGACCTCGGCCAAGGACATGCTGTTGGATGG
GGAGAAGAAGGGAGATGGCAACAAAAGCAAAGAAAGGAGTAGCCTAGGCT
TTTACGAATGCAATGGTGTCATGGAGACCAAGTCGTTTGAAGATCTGGAC
ATGCTGGAAAGTGGACATGCGCGTGAATACATTACCGACGAGTGTCTGCT
GCCCTGTCCGACCCTGAAGCGGTGGTCGACCTGCAACGTCGTCAAGGACG
GCAAGACCGCCTTTCGCATGTACCTAGATGAAACTCATACCCGCTTTATG
CTAAGCGCCAAGCGAGTGGGTGACTCCTTTTACATTTCCCAGTACGAATC
CTTCCCCGATAGCGTGGATGACGTGCCCGACCTTTATTACTGCGCGGTGC
TACGGACCTGCTCGGAGGGGCACTTCAAGCTTTTTCTGAACGGCTGTGAA
GCGTGCGATAGAAAGACAGACAAATACACGTGTGGCTCCGGGGATCGATG
CGATGACCGTCAGCTCTTGGCGGAGATCAATCATTCCGTGCGAAGAGTCA
AGGAGGCTAACGCGGACATGCGCTGTCTCTCAATCAAATTGCCCAAGATT
CACGAAGACAAACAGTCCAGGGAGGTTTGGTGCCCCAGAATGAACCAATT
GCGGAGGCAGGTAGGAGACCTCGACAAAGCCGGGCACGTCCGCTTGATGA
ATAAGCTTCCCGAATGGAACGAAGCACTGCAAAGTCTAGTCCTCCGATTC
AATAAGGGAAGAGTACTAGCGCCTTCGGCCAAGAACTTCTTGATATGTAT
GATGGCTGGGCAGGATAAGCGGGAGGGGGTGTTGCAGTTTGGAAAGACTC
GCAAAAGGCGGTATGCTTTGGACTTCCGTCATCCTATCAGTCCTCTGCAG
GCTTTTGGGATCTGTCTTTCATTATTTAAATGGAACATCTAGGGTGGAGA
CTGTGTGTGTATGTGCGGTGCAGATCGTACGGTCTCACCGGAAAGGTCAA
GGTGAAGATCCACCTATGACTTTTTTTTAGGGCCGGCACGGCTAGTGGCT
TTCTCGATACATCCAGTAGACAAAATTTTAATGATTGAGGGGAAGGAGTA
CAGGAAGTAGTAAAATGAATCGAATTGCTAACGAACAAAAT

protein sequence of NO07G01950.1

>NO07G01950.1-protein ID=NO07G01950.1-protein|Name=NO07G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MADMHSTSAAGELEELMQDTVKFIGGVADKLWTAGTSAKDMLLDGEKKGD
GNKSKERSSLGFYECNGVMETKSFEDLDMLESGHAREYITDECLLPCPTL
KRWSTCNVVKDGKTAFRMYLDETHTRFMLSAKRVGDSFYISQYESFPDSV
DDVPDLYYCAVLRTCSEGHFKLFLNGCEACDRKTDKYTCGSGDRCDDRQL
LAEINHSVRRVKEANADMRCLSIKLPKIHEDKQSREVWCPRMNQLRRQVG
DLDKAGHVRLMNKLPEWNEALQSLVLRFNKGRVLAPSAKNFLICMMAGQD
KREGVLQFGKTRKRRYALDFRHPISPLQAFGICLSLFKWNI*

mRNA from alignment at chr7:569015..570964-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G01950.1 ID=NO07G01950.1|Name=NO07G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1950bp|location=Sequence derived from alignment at chr7:569015..570964- (Nannochloropsis oceanica)
ACAGAGCAAGCGGGCCTCTTCTTGGCCTTGCTTTGGAGGAGGACCGAGGA
GGACGGGACGCACACTTGTGTAAACAGCCATCAGGAGCACTACAACCGGG
AATAGAAATACATAACATGGCAGACATGCACTCGACATCGGCAGCTGGTG
AGCTCGAAGAGCTGATGCAGGACACAGTCAAGTTTATCGGTGGTGTGGCA
GACAAGCTTTGGACTGCGGGGACCTCGGCCAAGGACATGCTGTTGGATGG
GGAGAAGAAGGGAGATGGCAACAAAAGCAAAGAAAGGAGTAGCCTAGGCT
TTTACGAATGCAATGGTGTCATGGAGACCAAGTCGTTTGAAGATCTGGAC
ATGCTGGTAAGGACCAAGGCCGGAGAATCTGCGCAACTGGCGTGGCACCA
GATTTTGGCTCCCAATGCTCGACAATTACATCCATTCCAACTCGACGATT
TCACCGACATCCCATTCTCCAATTTCTTCTGCCCCGTCTTCTTATCATCT
CTTCTGACTTCACAGGAAAGTGGACATGCGCGTGAATACATTACCGACGA
GTGTCTGCTGCCCTGTCCGACCCTGAAGCGGTGGTCGACCTGCAACGTCG
TCAAGGACGGCAAGACCGCCTTTCGCATGTACCTAGATGAAACTCATACC
CGCTTTATGCTAAGCGCCAAGCGAGTGGGTGACTCCTTTTACATTTCCCA
GTACGAATCCTTCCCCGATAGCGTGGATGACGTGCCCGACCTTTATTACT
GCGCGGTGCTACGGACCTGCTCGGAGGGGCACTTCAAGCTTTTTCTGAAC
GGCTGTGAAGCGTGCGATAGAAAGACAGACAAATACACGTGTGGCTCCGG
GGATCGATGCGATGACCGTCAGCTCTTGGCGGAGATCAATCATGTAAGCG
TTCCTGTCTCTCTTGGAGGATGGAACTTTATTTGAATGTGGAATGACGTC
GTACGTCAGAGAAGTGAAACATGAGGCAAACTTCAAATGATTGCGTCCCT
CATTCTCTCCTTGAACTAGAAACGAGTGTCACTTTTCCCATGGTATAACA
TTGAGGACCTCCACTGTCGCATCCTCAATTTGACTGAATACATTCTTTCA
TCACCTCTTTACCCTTCTCCTACCCGTCCCCATAGTCCGTGCGAAGAGTC
AAGGAGGCTAACGCGGACATGCGCTGTCTCTCAATCAAATTGCCCAAGAT
TCACGAAGACAAACAGTCCAGGGAGGTTTGGTGGTAAGTTTCATTCATAC
TTACATACGGGCGTACGTGTATGTGAGACATCCATGTCTAATTTCTCCTT
GATGACTTTTGATGTCATAAGAGGGGAAAGGATGATGTATGGGAAGAGGA
AAATGTTAGAGAGGATCTGTCAACCAATCATCTTCTCAACCTTGCCCCTC
TTCTTTCTTCTCCCCCCTTAAATCCAATTCCTACCACACAGCCCCAGAAT
GAACCAATTGCGGAGGCAGGTAGGAGACCTCGACAAAGCCGGGCACGTCC
GCTTGATGAATAAGCTTCCCGAATGGAACGAAGCACTGCAAAGTCTAGTC
CTCCGATTCAATAAGGGAAGAGTACTAGCGCCTTCGGCCAAGAACTTCTT
GATATGTATGATGGCTGGGCAGGATAAGCGGGAGGGGGTGTTGCAGTTTG
GAAAGACTCGCAAAAGGCGGTATGCTTTGGACTTCCGTCATCCTATCAGT
CCTCTGCAGGCTTTTGGGATCTGTCTTTCATTATTTAAATGGAACATCTA
GGGTGGAGACTGTGTGTGTATGTGCGGTGCAGATCGTACGGTCTCACCGG
AAAGGTCAAGGTGAAGATCCACCTATGACTTTTTTTTAGGGCCGGCACGG
CTAGTGGCTTTCTCGATACATCCAGTAGACAAAATTTTAATGATTGAGGG
GAAGGAGTACAGGAAGTAGTAAAATGAATCGAATTGCTAACGAACAAAAT

Coding sequence (CDS) from alignment at chr7:569015..570964-

>NO07G01950.1 ID=NO07G01950.1|Name=NO07G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr7:569015..570964- (Nannochloropsis oceanica)
ATGGCAGACATGCACTCGACATCGGCAGCTGGTGAGCTCGAAGAGCTGAT
GCAGGACACAGTCAAGTTTATCGGTGGTGTGGCAGACAAGCTTTGGACTG
CGGGGACCTCGGCCAAGGACATGCTGTTGGATGGGGAGAAGAAGGGAGAT
GGCAACAAAAGCAAAGAAAGGAGTAGCCTAGGCTTTTACGAATGCAATGG
TGTCATGGAGACCAAGTCGTTTGAAGATCTGGACATGCTGGAAAGTGGAC
ATGCGCGTGAATACATTACCGACGAGTGTCTGCTGCCCTGTCCGACCCTG
AAGCGGTGGTCGACCTGCAACGTCGTCAAGGACGGCAAGACCGCCTTTCG
CATGTACCTAGATGAAACTCATACCCGCTTTATGCTAAGCGCCAAGCGAG
TGGGTGACTCCTTTTACATTTCCCAGTACGAATCCTTCCCCGATAGCGTG
GATGACGTGCCCGACCTTTATTACTGCGCGGTGCTACGGACCTGCTCGGA
GGGGCACTTCAAGCTTTTTCTGAACGGCTGTGAAGCGTGCGATAGAAAGA
CAGACAAATACACGTGTGGCTCCGGGGATCGATGCGATGACCGTCAGCTC
TTGGCGGAGATCAATCATTCCGTGCGAAGAGTCAAGGAGGCTAACGCGGA
CATGCGCTGTCTCTCAATCAAATTGCCCAAGATTCACGAAGACAAACAGT
CCAGGGAGGTTTGGTGCCCCAGAATGAACCAATTGCGGAGGCAGGTAGGA
GACCTCGACAAAGCCGGGCACGTCCGCTTGATGAATAAGCTTCCCGAATG
GAACGAAGCACTGCAAAGTCTAGTCCTCCGATTCAATAAGGGAAGAGTAC
TAGCGCCTTCGGCCAAGAACTTCTTGATATGTATGATGGCTGGGCAGGAT
AAGCGGGAGGGGGTGTTGCAGTTTGGAAAGACTCGCAAAAGGCGGTATGC
TTTGGACTTCCGTCATCCTATCAGTCCTCTGCAGGCTTTTGGGATCTGTC
TTTCATTATTTAAATGGAACATCTAG

Synonyms

Publications