NO07G01570.1, NO07G01570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01570.1
Unique NameNO07G01570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1031
Alignment locationchr7:476901..478141 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:476901..478141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01570.1 vs.
Match: XP_005855271.1 (large subunit ribosomal protein L1 [Nannochloropsis gaditana CCMP526]; EKU21096.1 large subunit ribosomal protein L1 [Nannochloropsis gaditana CCMP526]; EWM27182.1 50s ribosomal protein l1 [Nannochloropsis gaditana])

HSP 1 Score: 443.0 bits (1138), Expect = 7.700e-121
Identity = 244/305 (80.00%), Postives = 265/305 (86.89%), Query Frame = 0 
Query:    1 MLARVLHYEGSSLATTVRGYVRHFTAEAARKRRPTSTTVGKAVAAVTSARASNRSTVPSAAS----PSSPSASSASRITEAMPIRDALTAVIQNAKEGKQRKFAETVDLAIQLGVDPRKPNQSVRGVQILPNGTGKAVRVAVFARGDDVEAAKAAGAAIVGAEELVKAIQDGDLAFDRCIATPEVMPLVSRVARMLGPRGLMPNPKMGTVTKDVATAVKSAMAGQVQFKADRFGMVHVGVGKVSFDTAALLENIRVLMVALNNAKPEGAKGKYLKGVHLTSTMGKAVPVEVATVDPRSSRFMFEA 302
            ML R+ H E   ++T + G +R FTAE  RKRRP STTVGKAVA++ SARAS RS+ P  +S     SSPSA S+SR+TEA+PIRDAL AV+Q AKE K+R F ETVDLAIQLGVDPRKPNQSVRGVQ LPNGTGK+VRVAVFARGDD EAAKAAGAA+VGAE+LVKAIQDG+LAFDRC+ATPEVMPLVSRVAR+LGPRGLMPNPKMGTVTKDV  AVKSAMAGQ QFKADRFGMVHVGVGKVSF+  ALLENIRVLMVAL NAKPEGAKGKY KGV LTSTMGKAVPVEVATVDPRSSRFM EA
Sbjct:    1 MLRRIRHQE-YRVSTALLGSLRGFTAETVRKRRPPSTTVGKAVASLNSARASQRSSSPVTSSHSLLQSSPSAPSSSRVTEALPIRDALAAVLQYAKEEKRRNFTETVDLAIQLGVDPRKPNQSVRGVQTLPNGTGKSVRVAVFARGDDAEAAKAAGAAVVGAEDLVKAIQDGELAFDRCVATPEVMPLVSRVARVLGPRGLMPNPKMGTVTKDVGAAVKSAMAGQAQFKADRFGMVHVGVGKVSFEPEALLENIRVLMVALGNAKPEGAKGKYFKGVFLTSTMGKAVPVEVATVDPRSSRFMLEA 304
The following BLAST results are available for this feature:
BLAST of NO07G01570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855271.17.700e-12180.00large subunit ribosomal protein L1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01570NO07G01570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01570.1NO07G01570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01570.1.cds1NO07G01570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01570.1.cds2NO07G01570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01570.1 ID=NO07G01570.1|Name=NO07G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1031bp
ACAGGAATCGCGACTATCCAAGCGAAAGCAATGCTTGCAAGAGTCCTCCA
TTACGAAGGCAGCAGTCTTGCGACTACGGTTCGGGGGTACGTGCGGCACT
TCACAGCTGAAGCAGCACGGAAACGAAGGCCAACATCCACGACTGTGGGC
AAGGCCGTTGCGGCAGTGACCTCTGCTCGAGCCAGCAACCGAAGCACTGT
CCCTTCCGCCGCCTCCCCTTCGTCCCCTTCTGCCTCCTCCGCTAGTCGAA
TCACCGAAGCCATGCCCATCCGGGACGCCCTCACTGCTGTTATCCAAAAC
GCCAAGGAAGGGAAACAAAGGAAGTTCGCAGAGACAGTAGACCTAGCCAT
TCAATTAGGTGTCGACCCCCGGAAACCCAATCAGAGCGTGCGAGGCGTGC
AGATCTTGCCCAATGGGACGGGTAAAGCCGTCAGGGTAGCAGTGTTTGCG
CGAGGAGATGATGTAGAGGCCGCCAAGGCAGCTGGTGCTGCCATCGTGGG
GGCAGAGGAGCTGGTTAAAGCCATCCAAGACGGGGACTTGGCATTCGACC
GCTGCATTGCCACGCCAGAAGTCATGCCCTTGGTCAGTCGCGTCGCGCGG
ATGTTGGGCCCGAGGGGTTTGATGCCCAATCCCAAGATGGGTACGGTGAC
GAAGGATGTGGCCACGGCTGTGAAGTCGGCGATGGCGGGGCAGGTTCAGT
TTAAGGCGGATCGGTTCGGGATGGTGCATGTGGGGGTGGGCAAGGTGTCG
TTTGACACGGCGGCATTGCTGGAGAATATACGGGTGTTGATGGTGGCATT
GAATAATGCTAAGCCTGAGGGGGCAAAGGGGAAGTATTTGAAGGGCGTGC
ATCTCACGAGTACAATGGGCAAGGCAGTGCCGGTGGAGGTGGCGACGGTG
GACCCCAGGAGTTCAAGGTTCATGTTTGAGGCGACGCCCTCGATATAATA
CAACAGCCGAGCAGCACAGATATTTCATAGAAGAAAAAGACGGAGAAGCT
GACGAAGTAATGAAAAGCGCAGATCATTGTG
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protein sequence of NO07G01570.1

>NO07G01570.1-protein ID=NO07G01570.1-protein|Name=NO07G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MLARVLHYEGSSLATTVRGYVRHFTAEAARKRRPTSTTVGKAVAAVTSAR
ASNRSTVPSAASPSSPSASSASRITEAMPIRDALTAVIQNAKEGKQRKFA
ETVDLAIQLGVDPRKPNQSVRGVQILPNGTGKAVRVAVFARGDDVEAAKA
AGAAIVGAEELVKAIQDGDLAFDRCIATPEVMPLVSRVARMLGPRGLMPN
PKMGTVTKDVATAVKSAMAGQVQFKADRFGMVHVGVGKVSFDTAALLENI
RVLMVALNNAKPEGAKGKYLKGVHLTSTMGKAVPVEVATVDPRSSRFMFE
ATPSI*
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mRNA from alignment at chr7:476901..478141+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01570.1 ID=NO07G01570.1|Name=NO07G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp|location=Sequence derived from alignment at chr7:476901..478141+ (Nannochloropsis oceanica)
ACAGGAATCGCGACTATCCAAGCGAAAGCAATGCTTGCAAGAGTCCTCCA
TTACGAAGGCAGCAGTCTTGCGACTACGGTTCGGGGGTACGTGCGGCACT
TCACAGCTGAAGCAGCACGGAAACGAAGGCCAACATCCACGACTGTGGGC
AAGGCCGTTGCGGCAGTGACCTCTGCTCGAGCCAGCAACCGAAGCACTGT
CCCTTCCGCCGCCTCCCCTTCGTCCCCTTCTGCCTCCTCCGCTAGTCGAG
TACGTCTTTGAATAGTGTTTATTGGAAGGTCCCCATGGCTTCCTGGATTT
TTTGAACGGAAACGAAAGAGCCGGGCTTGCCGTAGCTTTCCTATTCCTTG
CCTCGTCGCGGCTTTAAATCGAGCCTTAATCACGCATCACCACCTCTCCC
CACATTCAAATAACTTTCCCATTCCTCACCTCTGTACACTTCCTCCTCCA
CACTATCAGATCACCGAAGCCATGCCCATCCGGGACGCCCTCACTGCTGT
TATCCAAAACGCCAAGGAAGGGAAACAAAGGAAGTTCGCAGAGACAGTAG
ACCTAGCCATTCAATTAGGTGTCGACCCCCGGAAACCCAATCAGAGCGTG
CGAGGCGTGCAGATCTTGCCCAATGGGACGGGTAAAGCCGTCAGGGTAGC
AGTGTTTGCGCGAGGAGATGATGTAGAGGCCGCCAAGGCAGCTGGTGCTG
CCATCGTGGGGGCAGAGGAGCTGGTTAAAGCCATCCAAGACGGGGACTTG
GCATTCGACCGCTGCATTGCCACGCCAGAAGTCATGCCCTTGGTCAGTCG
CGTCGCGCGGATGTTGGGCCCGAGGGGTTTGATGCCCAATCCCAAGATGG
GTACGGTGACGAAGGATGTGGCCACGGCTGTGAAGTCGGCGATGGCGGGG
CAGGTTCAGTTTAAGGCGGATCGGTTCGGGATGGTGCATGTGGGGGTGGG
CAAGGTGTCGTTTGACACGGCGGCATTGCTGGAGAATATACGGGTGTTGA
TGGTGGCATTGAATAATGCTAAGCCTGAGGGGGCAAAGGGGAAGTATTTG
AAGGGCGTGCATCTCACGAGTACAATGGGCAAGGCAGTGCCGGTGGAGGT
GGCGACGGTGGACCCCAGGAGTTCAAGGTTCATGTTTGAGGCGACGCCCT
CGATATAATACAACAGCCGAGCAGCACAGATATTTCATAGAAGAAAAAGA
CGGAGAAGCTGACGAAGTAATGAAAAGCGCAGATCATTGTG
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Coding sequence (CDS) from alignment at chr7:476901..478141+

>NO07G01570.1 ID=NO07G01570.1|Name=NO07G01570.1|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at chr7:476901..478141+ (Nannochloropsis oceanica)
ATGCTTGCAAGAGTCCTCCATTACGAAGGCAGCAGTCTTGCGACTACGGT
TCGGGGGTACGTGCGGCACTTCACAGCTGAAGCAGCACGGAAACGAAGGC
CAACATCCACGACTGTGGGCAAGGCCGTTGCGGCAGTGACCTCTGCTCGA
GCCAGCAACCGAAGCACTGTCCCTTCCGCCGCCTCCCCTTCGTCCCCTTC
TGCCTCCTCCGCTAGTCGAATCACCGAAGCCATGCCCATCCGGGACGCCC
TCACTGCTGTTATCCAAAACGCCAAGGAAGGGAAACAAAGGAAGTTCGCA
GAGACAGTAGACCTAGCCATTCAATTAGGTGTCGACCCCCGGAAACCCAA
TCAGAGCGTGCGAGGCGTGCAGATCTTGCCCAATGGGACGGGTAAAGCCG
TCAGGGTAGCAGTGTTTGCGCGAGGAGATGATGTAGAGGCCGCCAAGGCA
GCTGGTGCTGCCATCGTGGGGGCAGAGGAGCTGGTTAAAGCCATCCAAGA
CGGGGACTTGGCATTCGACCGCTGCATTGCCACGCCAGAAGTCATGCCCT
TGGTCAGTCGCGTCGCGCGGATGTTGGGCCCGAGGGGTTTGATGCCCAAT
CCCAAGATGGGTACGGTGACGAAGGATGTGGCCACGGCTGTGAAGTCGGC
GATGGCGGGGCAGGTTCAGTTTAAGGCGGATCGGTTCGGGATGGTGCATG
TGGGGGTGGGCAAGGTGTCGTTTGACACGGCGGCATTGCTGGAGAATATA
CGGGTGTTGATGGTGGCATTGAATAATGCTAAGCCTGAGGGGGCAAAGGG
GAAGTATTTGAAGGGCGTGCATCTCACGAGTACAATGGGCAAGGCAGTGC
CGGTGGAGGTGGCGACGGTGGACCCCAGGAGTTCAAGGTTCATGTTTGAG
GCGACGCCCTCGATATAA
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Synonyms
Publications