NO07G01540.1, NO07G01540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01540.1
Unique NameNO07G01540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1986
Alignment locationchr7:467492..469477 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:467492..469477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01540.1 vs.
Match: EWM27168.1 (lamin-b receptor [Nannochloropsis gaditana])

HSP 1 Score: 832.0 bits (2148), Expect = 1.300e-237
Identity = 425/675 (62.96%), Postives = 506/675 (74.96%), Query Frame = 0 
Query:    1 MVSTRARRSPGDKKAASAVAAATLKAPKRRATMASTASAAPTTP-GPVSRS-ASPSGNKAPKSRVDPPPPQQEVDAAPKPKQIKVKMPGKAATKPPSANPASPL---FEYEFGGPWGALCIVVGLPVVVLGLYYCCPNYVSSFSPSSSASS-PFSFQSSSSPLACLRWTDLTYFLITTLPATLKG-------YALEINSSPTEAAHALLCYLKTLPSFAQSKGIEMINLVKNELWDPMAFLAIVAWFLFQVLLERVLPGEIALGVPLPGTEGKRLPYKLNGHLAFWITLLVMGHGCPKFASPVLEEVGIKPSVAMDEGDE-VQQVLGEVGEVMTQAAEEVIRGGRVLGGALMQATEGIAAREWQIPAWEDLMGFGAFPLEQLYDRFPQFAFAAVVFSFGLALCLYVLSFRRGVLLAEGGKSGNILYDFYIGRELNPRSGGFDWKYFCELRPGLIGWVVLNLGMLMKQQQLQQVTGEGISWPLVLVCVFQGWYVLDALLNERAILTTMDITTDGFGFMLAFGDLAWVPFTYSMQARYLVGRPVSVGGWVAGCLAGLHLLGYWIFRRANSIKDVFRRDPGSVPHVKYLETARGTKLMISGWWGWARKINYTGDWMMSLAWCGLCGPVHVLPYFYAIYFGVLLVHRAARDDHLCALKYGDDWKQYKKEVRWLFFPGVY 662
            MVSTR RRSPG KK  +A  A  ++  +RR   A T+S     P  P S+   SP   KAPKSR    P  +E +A  +PK  + K   KA +    ++P   +   F+YEFGGPWGAL IVVGLPVVV+GLYY CPN++SS SPSSS+S  P SF+SS+SPLACLRWTD+ +FL +TLPA L+        +AL+   SP   A A +  ++ +P   +++G  ++ LV+NELWDP+AF  IVAWF FQV+LER+LPGE+ALGVPL G EG RLPYKLNGHLAFWI+LL++ HGCP+FA PV E+ GI P++  DEGDE         G+ + Q A +   G                     IP   +L GFG FPLE+LYD FPQFAFAAVVFSFGL+L LY+ SFR+G  LA+GG+SGN++YDFY+GRELNPR G FDWKYFCELRPGLIGWV LN+GMLMKQQQLQ VTGE  SWPLVLV VFQGWYVLDALLNERAILTTMDITTDGFGFMLAFGDLAWVPFTYS+QARYLVGRPVS+  +    L+ +HL+GYWIFR+ANS KD FRRDP SVPHV+Y++T RGTKLM+SGWWGWARKINYTGDW+M+LAWCGLCGP HVLPYFYAIYFG+LLVHRAARDDHLC+LKYG DW++YKKEV+WLF PG+Y
Sbjct:    1 MVSTRRRRSPGSKKE-NAATAPEIRTVRRRTVAAVTSSGTDNIPLTPTSKILGSPPRKKAPKSRSIDSPLSEEDNAPTRPKATRKKPMSKALSASAPSHPPEAVASSFKYEFGGPWGALGIVVGLPVVVMGLYYFCPNFMSSASPSSSSSKYPLSFRSSTSPLACLRWTDMAHFLTSTLPALLRALPSTFSTFALQARRSPHNTASAFMAIIQHIPGALKARGSALVALVQNELWDPLAFACIVAWFCFQVVLERLLPGEVALGVPLLGAEGLRLPYKLNGHLAFWISLLLLVHGCPRFAVPV-EDEGILPTIVGDEGDEQFVYTASAAGDAVLQHAGQAANGA--------------------IPVLGELTGFGPFPLEKLYDHFPQFAFAAVVFSFGLSLLLYLASFRKGARLADGGRSGNVMYDFYMGRELNPRLGSFDWKYFCELRPGLIGWVALNMGMLMKQQQLQAVTGEPPSWPLVLVNVFQGWYVLDALLNERAILTTMDITTDGFGFMLAFGDLAWVPFTYSLQARYLVGRPVSLSTYALAGLSAMHLVGYWIFRQANSTKDAFRRDPTSVPHVRYMDTIRGTKLMVSGWWGWARKINYTGDWLMALAWCGLCGPTHVLPYFYAIYFGILLVHRAARDDHLCSLKYGADWQKYKKEVKWLFLPGIY 653
The following BLAST results are available for this feature:
BLAST of NO07G01540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27168.11.300e-23762.96lamin-b receptor [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01540NO07G01540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01540.1NO07G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01540.1.cds1NO07G01540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01540.1 ID=NO07G01540.1|Name=NO07G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1986bp
ATGGTAAGCACACGGGCACGGCGGTCCCCCGGTGACAAAAAAGCGGCTTC
CGCCGTTGCCGCTGCCACGCTGAAAGCCCCTAAGAGGCGCGCAACCATGG
CGTCCACCGCGTCCGCTGCTCCCACCACTCCTGGTCCCGTCTCCCGCTCC
GCCAGCCCCTCCGGGAATAAGGCGCCAAAGTCTCGCGTCGACCCCCCTCC
TCCCCAACAAGAAGTGGACGCAGCACCCAAGCCTAAGCAGATCAAGGTGA
AGATGCCCGGTAAGGCAGCCACGAAACCTCCTTCTGCCAATCCCGCGTCG
CCTTTGTTCGAGTACGAGTTTGGTGGGCCCTGGGGTGCCCTTTGCATCGT
CGTCGGCCTCCCAGTTGTAGTGCTAGGCCTTTACTACTGCTGCCCAAACT
ACGTTTCCTCTTTCTCCCCTTCCTCCTCCGCTTCCTCCCCCTTCTCCTTT
CAGTCCTCCTCCTCCCCTCTCGCCTGCCTGCGATGGACGGACCTGACCTA
CTTTCTCATCACCACTCTCCCAGCCACCCTCAAAGGCTACGCCTTGGAAA
TCAATTCCTCCCCCACGGAAGCCGCCCATGCCCTTCTCTGCTATTTGAAA
ACCCTTCCTTCCTTTGCACAAAGCAAGGGAATAGAGATGATTAACTTGGT
GAAAAATGAGCTCTGGGACCCGATGGCTTTTCTGGCGATTGTCGCTTGGT
TTCTCTTCCAGGTGTTGCTTGAGCGGGTGCTGCCGGGAGAAATCGCGTTG
GGCGTGCCGCTGCCTGGCACAGAAGGAAAGAGGCTGCCTTATAAATTGAA
TGGACATTTGGCGTTTTGGATTACTTTGCTAGTGATGGGGCATGGATGTC
CGAAATTTGCATCTCCTGTGTTGGAAGAAGTAGGTATCAAGCCGTCGGTA
GCGATGGACGAGGGGGATGAAGTGCAGCAGGTCTTGGGAGAGGTGGGGGA
GGTGATGACACAGGCGGCAGAAGAGGTGATCAGAGGAGGACGAGTGCTTG
GGGGGGCATTGATGCAGGCGACAGAAGGGATTGCAGCGAGGGAATGGCAA
ATCCCGGCTTGGGAAGATTTGATGGGGTTTGGAGCGTTTCCGCTTGAACA
GTTGTATGATCGCTTCCCGCAGTTTGCGTTTGCTGCTGTTGTCTTTTCGT
TTGGCCTGGCGTTGTGTCTATATGTGCTTAGTTTCCGGAGGGGTGTGTTG
TTGGCCGAGGGGGGGAAGAGTGGGAACATCCTATACGATTTTTACATAGG
GAGGGAACTGAACCCGAGGAGTGGGGGATTTGATTGGAAATACTTTTGTG
AGCTTCGGCCTGGGCTGATTGGATGGGTGGTGCTCAATTTGGGGATGTTG
ATGAAGCAGCAGCAGCTGCAGCAGGTCACGGGGGAGGGTATAAGTTGGCC
GCTGGTGCTTGTTTGTGTGTTTCAGGGGTGGTATGTTCTGGATGCCCTCT
TGAACGAACGGGCTATTCTGACGACAATGGATATCACGACGGATGGATTT
GGATTCATGCTTGCGTTTGGGGATTTGGCCTGGGTGCCATTTACGTACTC
AATGCAAGCGAGATATTTGGTGGGGAGGCCTGTGAGCGTTGGCGGATGGG
TTGCAGGGTGTCTGGCGGGGCTGCATTTGTTGGGGTATTGGATTTTTAGG
CGGGCGAATAGTATAAAGGATGTGTTTAGGAGAGACCCCGGAAGTGTTCC
GCACGTGAAGTATTTGGAAACGGCGCGAGGGACGAAGTTGATGATCAGTG
GGTGGTGGGGCTGGGCGCGTAAGATTAATTACACGGGGGATTGGATGATG
AGTTTGGCGTGGTGTGGGTTGTGTGGGCCGGTGCACGTGTTGCCATACTT
TTATGCGATCTATTTTGGGGTCTTGCTAGTGCACCGGGCGGCGAGAGACG
ATCATTTGTGTGCGTTGAAGTATGGGGACGATTGGAAGCAGTATAAAAAG
GAGGTAAGGTGGTTATTTTTTCCGGGGGTGTACTAA
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protein sequence of NO07G01540.1

>NO07G01540.1-protein ID=NO07G01540.1-protein|Name=NO07G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=662bp
MVSTRARRSPGDKKAASAVAAATLKAPKRRATMASTASAAPTTPGPVSRS
ASPSGNKAPKSRVDPPPPQQEVDAAPKPKQIKVKMPGKAATKPPSANPAS
PLFEYEFGGPWGALCIVVGLPVVVLGLYYCCPNYVSSFSPSSSASSPFSF
QSSSSPLACLRWTDLTYFLITTLPATLKGYALEINSSPTEAAHALLCYLK
TLPSFAQSKGIEMINLVKNELWDPMAFLAIVAWFLFQVLLERVLPGEIAL
GVPLPGTEGKRLPYKLNGHLAFWITLLVMGHGCPKFASPVLEEVGIKPSV
AMDEGDEVQQVLGEVGEVMTQAAEEVIRGGRVLGGALMQATEGIAAREWQ
IPAWEDLMGFGAFPLEQLYDRFPQFAFAAVVFSFGLALCLYVLSFRRGVL
LAEGGKSGNILYDFYIGRELNPRSGGFDWKYFCELRPGLIGWVVLNLGML
MKQQQLQQVTGEGISWPLVLVCVFQGWYVLDALLNERAILTTMDITTDGF
GFMLAFGDLAWVPFTYSMQARYLVGRPVSVGGWVAGCLAGLHLLGYWIFR
RANSIKDVFRRDPGSVPHVKYLETARGTKLMISGWWGWARKINYTGDWMM
SLAWCGLCGPVHVLPYFYAIYFGVLLVHRAARDDHLCALKYGDDWKQYKK
EVRWLFFPGVY*
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mRNA from alignment at chr7:467492..469477+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01540.1 ID=NO07G01540.1|Name=NO07G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1986bp|location=Sequence derived from alignment at chr7:467492..469477+ (Nannochloropsis oceanica)
ATGGTAAGCACACGGGCACGGCGGTCCCCCGGTGACAAAAAAGCGGCTTC
CGCCGTTGCCGCTGCCACGCTGAAAGCCCCTAAGAGGCGCGCAACCATGG
CGTCCACCGCGTCCGCTGCTCCCACCACTCCTGGTCCCGTCTCCCGCTCC
GCCAGCCCCTCCGGGAATAAGGCGCCAAAGTCTCGCGTCGACCCCCCTCC
TCCCCAACAAGAAGTGGACGCAGCACCCAAGCCTAAGCAGATCAAGGTGA
AGATGCCCGGTAAGGCAGCCACGAAACCTCCTTCTGCCAATCCCGCGTCG
CCTTTGTTCGAGTACGAGTTTGGTGGGCCCTGGGGTGCCCTTTGCATCGT
CGTCGGCCTCCCAGTTGTAGTGCTAGGCCTTTACTACTGCTGCCCAAACT
ACGTTTCCTCTTTCTCCCCTTCCTCCTCCGCTTCCTCCCCCTTCTCCTTT
CAGTCCTCCTCCTCCCCTCTCGCCTGCCTGCGATGGACGGACCTGACCTA
CTTTCTCATCACCACTCTCCCAGCCACCCTCAAAGGCTACGCCTTGGAAA
TCAATTCCTCCCCCACGGAAGCCGCCCATGCCCTTCTCTGCTATTTGAAA
ACCCTTCCTTCCTTTGCACAAAGCAAGGGAATAGAGATGATTAACTTGGT
GAAAAATGAGCTCTGGGACCCGATGGCTTTTCTGGCGATTGTCGCTTGGT
TTCTCTTCCAGGTGTTGCTTGAGCGGGTGCTGCCGGGAGAAATCGCGTTG
GGCGTGCCGCTGCCTGGCACAGAAGGAAAGAGGCTGCCTTATAAATTGAA
TGGACATTTGGCGTTTTGGATTACTTTGCTAGTGATGGGGCATGGATGTC
CGAAATTTGCATCTCCTGTGTTGGAAGAAGTAGGTATCAAGCCGTCGGTA
GCGATGGACGAGGGGGATGAAGTGCAGCAGGTCTTGGGAGAGGTGGGGGA
GGTGATGACACAGGCGGCAGAAGAGGTGATCAGAGGAGGACGAGTGCTTG
GGGGGGCATTGATGCAGGCGACAGAAGGGATTGCAGCGAGGGAATGGCAA
ATCCCGGCTTGGGAAGATTTGATGGGGTTTGGAGCGTTTCCGCTTGAACA
GTTGTATGATCGCTTCCCGCAGTTTGCGTTTGCTGCTGTTGTCTTTTCGT
TTGGCCTGGCGTTGTGTCTATATGTGCTTAGTTTCCGGAGGGGTGTGTTG
TTGGCCGAGGGGGGGAAGAGTGGGAACATCCTATACGATTTTTACATAGG
GAGGGAACTGAACCCGAGGAGTGGGGGATTTGATTGGAAATACTTTTGTG
AGCTTCGGCCTGGGCTGATTGGATGGGTGGTGCTCAATTTGGGGATGTTG
ATGAAGCAGCAGCAGCTGCAGCAGGTCACGGGGGAGGGTATAAGTTGGCC
GCTGGTGCTTGTTTGTGTGTTTCAGGGGTGGTATGTTCTGGATGCCCTCT
TGAACGAACGGGCTATTCTGACGACAATGGATATCACGACGGATGGATTT
GGATTCATGCTTGCGTTTGGGGATTTGGCCTGGGTGCCATTTACGTACTC
AATGCAAGCGAGATATTTGGTGGGGAGGCCTGTGAGCGTTGGCGGATGGG
TTGCAGGGTGTCTGGCGGGGCTGCATTTGTTGGGGTATTGGATTTTTAGG
CGGGCGAATAGTATAAAGGATGTGTTTAGGAGAGACCCCGGAAGTGTTCC
GCACGTGAAGTATTTGGAAACGGCGCGAGGGACGAAGTTGATGATCAGTG
GGTGGTGGGGCTGGGCGCGTAAGATTAATTACACGGGGGATTGGATGATG
AGTTTGGCGTGGTGTGGGTTGTGTGGGCCGGTGCACGTGTTGCCATACTT
TTATGCGATCTATTTTGGGGTCTTGCTAGTGCACCGGGCGGCGAGAGACG
ATCATTTGTGTGCGTTGAAGTATGGGGACGATTGGAAGCAGTATAAAAAG
GAGGTAAGGTGGTTATTTTTTCCGGGGGTGTACTAA
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Coding sequence (CDS) from alignment at chr7:467492..469477+

>NO07G01540.1 ID=NO07G01540.1|Name=NO07G01540.1|organism=Nannochloropsis oceanica|type=CDS|length=1986bp|location=Sequence derived from alignment at chr7:467492..469477+ (Nannochloropsis oceanica)
ATGGTAAGCACACGGGCACGGCGGTCCCCCGGTGACAAAAAAGCGGCTTC
CGCCGTTGCCGCTGCCACGCTGAAAGCCCCTAAGAGGCGCGCAACCATGG
CGTCCACCGCGTCCGCTGCTCCCACCACTCCTGGTCCCGTCTCCCGCTCC
GCCAGCCCCTCCGGGAATAAGGCGCCAAAGTCTCGCGTCGACCCCCCTCC
TCCCCAACAAGAAGTGGACGCAGCACCCAAGCCTAAGCAGATCAAGGTGA
AGATGCCCGGTAAGGCAGCCACGAAACCTCCTTCTGCCAATCCCGCGTCG
CCTTTGTTCGAGTACGAGTTTGGTGGGCCCTGGGGTGCCCTTTGCATCGT
CGTCGGCCTCCCAGTTGTAGTGCTAGGCCTTTACTACTGCTGCCCAAACT
ACGTTTCCTCTTTCTCCCCTTCCTCCTCCGCTTCCTCCCCCTTCTCCTTT
CAGTCCTCCTCCTCCCCTCTCGCCTGCCTGCGATGGACGGACCTGACCTA
CTTTCTCATCACCACTCTCCCAGCCACCCTCAAAGGCTACGCCTTGGAAA
TCAATTCCTCCCCCACGGAAGCCGCCCATGCCCTTCTCTGCTATTTGAAA
ACCCTTCCTTCCTTTGCACAAAGCAAGGGAATAGAGATGATTAACTTGGT
GAAAAATGAGCTCTGGGACCCGATGGCTTTTCTGGCGATTGTCGCTTGGT
TTCTCTTCCAGGTGTTGCTTGAGCGGGTGCTGCCGGGAGAAATCGCGTTG
GGCGTGCCGCTGCCTGGCACAGAAGGAAAGAGGCTGCCTTATAAATTGAA
TGGACATTTGGCGTTTTGGATTACTTTGCTAGTGATGGGGCATGGATGTC
CGAAATTTGCATCTCCTGTGTTGGAAGAAGTAGGTATCAAGCCGTCGGTA
GCGATGGACGAGGGGGATGAAGTGCAGCAGGTCTTGGGAGAGGTGGGGGA
GGTGATGACACAGGCGGCAGAAGAGGTGATCAGAGGAGGACGAGTGCTTG
GGGGGGCATTGATGCAGGCGACAGAAGGGATTGCAGCGAGGGAATGGCAA
ATCCCGGCTTGGGAAGATTTGATGGGGTTTGGAGCGTTTCCGCTTGAACA
GTTGTATGATCGCTTCCCGCAGTTTGCGTTTGCTGCTGTTGTCTTTTCGT
TTGGCCTGGCGTTGTGTCTATATGTGCTTAGTTTCCGGAGGGGTGTGTTG
TTGGCCGAGGGGGGGAAGAGTGGGAACATCCTATACGATTTTTACATAGG
GAGGGAACTGAACCCGAGGAGTGGGGGATTTGATTGGAAATACTTTTGTG
AGCTTCGGCCTGGGCTGATTGGATGGGTGGTGCTCAATTTGGGGATGTTG
ATGAAGCAGCAGCAGCTGCAGCAGGTCACGGGGGAGGGTATAAGTTGGCC
GCTGGTGCTTGTTTGTGTGTTTCAGGGGTGGTATGTTCTGGATGCCCTCT
TGAACGAACGGGCTATTCTGACGACAATGGATATCACGACGGATGGATTT
GGATTCATGCTTGCGTTTGGGGATTTGGCCTGGGTGCCATTTACGTACTC
AATGCAAGCGAGATATTTGGTGGGGAGGCCTGTGAGCGTTGGCGGATGGG
TTGCAGGGTGTCTGGCGGGGCTGCATTTGTTGGGGTATTGGATTTTTAGG
CGGGCGAATAGTATAAAGGATGTGTTTAGGAGAGACCCCGGAAGTGTTCC
GCACGTGAAGTATTTGGAAACGGCGCGAGGGACGAAGTTGATGATCAGTG
GGTGGTGGGGCTGGGCGCGTAAGATTAATTACACGGGGGATTGGATGATG
AGTTTGGCGTGGTGTGGGTTGTGTGGGCCGGTGCACGTGTTGCCATACTT
TTATGCGATCTATTTTGGGGTCTTGCTAGTGCACCGGGCGGCGAGAGACG
ATCATTTGTGTGCGTTGAAGTATGGGGACGATTGGAAGCAGTATAAAAAG
GAGGTAAGGTGGTTATTTTTTCCGGGGGTGTACTAA
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Synonyms
Publications