NO07G01340.1, NO07G01340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01340.1
Unique NameNO07G01340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1077
Alignment locationchr7:422710..424247 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:422710..424247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01340.1 vs.
Match: EWM27241.1 (chord family protein [Nannochloropsis gaditana])

HSP 1 Score: 440.3 bits (1131), Expect = 5.900e-120
Identity = 223/356 (62.64%), Postives = 270/356 (75.84%), Query Frame = 0 
Query:    1 MKLYFHYEETDDAGDVEEAKALTLKLTLPKSWVGQPLLQVLELFLENYNNKKARLEPLDISGVHLEKADGMKIHTTDIVMDILSDRDDVYVKHGAEQPAKAKRTPPSSSSSSSSSSSSSSSSSSSIPGATTEGSTGLLRCKNYGCNQSFAQETNTESACRFHRAPPVFHDTKKGWACCTKRVYDWDEFHTIEGCATGRHSTLDPKEVFAPSPTLAAANQAGANGGSDAPGASSTALKSIEDYNQANPDAATAAKSAASSVTKPQARCTVKADGSATCLNKGCQKEFQVKENHPTACCYHASGPVFHDAGKFWSCCPGVIKYDFEEFLKIPGCMVSSHLDGSEESSRFFESHARKRE 357
            MKLY HYEE       ++ KALTLKLTLPKSW  QPLLQVLELF+E+YN KK  L PLD   VH+EKA G+ +   +IV D+LSDRDD+Y++ G   PA+ K    SS  ++ +SS               E STGLLRCKNYGCNQSF++E N+E ACRFH+APPVFHDTKKGW+CC KRVYDWDEFHTIEGC TGRHS +DPKE+FAPSPTLAAA QA   G      +++T +KSI+++NQ+NP+AA A K+AA S+T+   RCTVK DGSATCLNKGCQK++ +KENHP+AC YHA+GPVFHDAGK+WSCCPG +KYDF++FLKIPGCM+SSH DGS+ES   F  HA+  E
Sbjct:    1 MKLYVHYEEAG-----QDEKALTLKLTLPKSWAEQPLLQVLELFIESYNKKKTGLPPLDKDFVHMEKAGGVILPVGNIVSDMLSDRDDLYIRSGPG-PARGKIAHLSSPPNAHASS---------------ESSTGLLRCKNYGCNQSFSEENNSEEACRFHKAPPVFHDTKKGWSCCAKRVYDWDEFHTIEGCTTGRHSLIDPKEIFAPSPTLAAAAQA-ERGDCSNTSSAATVIKSIDEFNQSNPNAAAACKTAA-SMTQAGTRCTVKPDGSATCLNKGCQKDYLLKENHPSACRYHAAGPVFHDAGKYWSCCPGTVKYDFDDFLKIPGCMLSSHYDGSQESLEAFTRHAKTSE 333
The following BLAST results are available for this feature:
BLAST of NO07G01340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27241.15.900e-12062.64chord family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01340NO07G01340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01340.1NO07G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01340.1.cds1NO07G01340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01340.1.cds2NO07G01340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01340.1.cds3NO07G01340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01340.1.cds4NO07G01340.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01340.1 ID=NO07G01340.1|Name=NO07G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp
ATGAAGCTCTACTTCCACTACGAGGAGACCGACGACGCGGGTGATGTCGA
GGAAGCAAAAGCCTTAACTCTTAAACTCACACTACCAAAAAGCTGGGTGG
GACAGCCGCTGCTCCAAGTGCTGGAGCTCTTTCTTGAGAACTATAACAAC
AAGAAGGCCAGGCTCGAACCTTTGGACATATCCGGAGTGCATCTGGAAAA
AGCAGACGGTATGAAAATCCACACCACTGATATCGTGATGGATATTCTGA
GTGATCGCGATGACGTGTACGTCAAACATGGGGCGGAACAACCAGCCAAG
GCAAAGCGTACCCCGCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCTTCTTCTATCCCTGGAGCCACCACAGAAGGTA
GCACCGGCCTGCTGCGCTGCAAGAACTACGGATGCAACCAGTCTTTTGCC
CAAGAGACCAACACGGAGTCAGCCTGCCGCTTCCATAGGGCCCCCCCCGT
GTTTCACGACACGAAGAAAGGTTGGGCTTGTTGCACGAAGCGGGTTTATG
ACTGGGACGAGTTCCATACGATCGAGGGCTGTGCCACCGGCCGACACAGC
ACCTTGGATCCCAAGGAGGTCTTTGCCCCATCGCCTACTCTCGCAGCCGC
TAATCAAGCTGGAGCTAATGGAGGAAGTGATGCCCCCGGCGCTTCTTCTA
CGGCCCTCAAGTCCATCGAGGACTACAACCAAGCGAACCCCGATGCTGCC
ACTGCTGCCAAAAGCGCGGCGTCGTCAGTGACCAAGCCTCAGGCCAGGTG
CACCGTCAAGGCGGACGGGTCGGCCACGTGTCTGAATAAGGGATGTCAAA
AGGAGTTTCAAGTCAAGGAGAACCACCCAACGGCTTGCTGCTACCACGCG
TCCGGACCCGTCTTTCACGACGCGGGCAAGTTCTGGTCCTGTTGTCCCGG
GGTGATCAAGTACGACTTTGAGGAATTTTTGAAAATTCCCGGATGTATGG
TTAGTAGCCACCTTGATGGGAGCGAGGAGAGTTCGCGGTTTTTCGAGTCG
CATGCGAGAAAAAGGGAAGATCGGTGA
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protein sequence of NO07G01340.1

>NO07G01340.1-protein ID=NO07G01340.1-protein|Name=NO07G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MKLYFHYEETDDAGDVEEAKALTLKLTLPKSWVGQPLLQVLELFLENYNN
KKARLEPLDISGVHLEKADGMKIHTTDIVMDILSDRDDVYVKHGAEQPAK
AKRTPPSSSSSSSSSSSSSSSSSSSIPGATTEGSTGLLRCKNYGCNQSFA
QETNTESACRFHRAPPVFHDTKKGWACCTKRVYDWDEFHTIEGCATGRHS
TLDPKEVFAPSPTLAAANQAGANGGSDAPGASSTALKSIEDYNQANPDAA
TAAKSAASSVTKPQARCTVKADGSATCLNKGCQKEFQVKENHPTACCYHA
SGPVFHDAGKFWSCCPGVIKYDFEEFLKIPGCMVSSHLDGSEESSRFFES
HARKREDR*
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mRNA from alignment at chr7:422710..424247-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01340.1 ID=NO07G01340.1|Name=NO07G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp|location=Sequence derived from alignment at chr7:422710..424247- (Nannochloropsis oceanica)
ATGAAGCTCTACTTCCACTACGAGGAGACCGACGACGCGGGTGATGTCGA
GGAAGCAAAAGCCTTAACTCTTAAACTCACACTACCAAAAAGCTGGGTGG
GACAGCCGCTGCTCCAAGTGCTGGAGCTCTTTCTTGAGAACTATAACAAC
AAGAAGGCCAGGCTCGAACCTTTGGACATATCCGGAGTGCATCTGGAAAA
AGCAGAGTAAGCTCAAAAATCTTCCTTCTATCTATGTGTCGCATGCTCGC
ATGCACTCTGTCATGCTTCAAGGCTCGGGCTAAATGTCACAATGCCCTCG
CACGTGCCGCCAAGGCATTTCACGCTCACACTTTATTCTTCCTTATAATC
CTCTTCCTCCTCGTCCAGCGGTATGAAAATCCACACCACTGATATCGTGA
TGGATATTCTGAGTGATCGCGATGACGTGTACGTCAAACATGGGGCGGAA
CAACCAGCCAAGGCAAAGCGTACCCCGCCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTATCCCTGGAGCCA
CCACAGAAGGTAGCACCGGCCTGCTGCGCTGCAAGAACTACGGATGCAAC
CAGTCTTTTGCCCAAGAGACCAACACGGAGTCAGCCTGCCGCTTCCATAG
GGCCCCCCCCGTGTTTCACGACACGAAGAAAGGTTGGGCTTGTTGCACGA
AGCGGGTTTATGACTGGGACGAGTTCCATACGGTACGTTTCGGCTGTCCT
CTGTTTGGATTGATCGATATGTGTCGCCCTTTGCTAATTTTCAGAGTGCA
GCAAGTGCATGGATCGCCTCTCTGACTGTCCTCTTCCTTTTCTCCTCCAA
AAAATGTCCCCCCTCAAGATCGAGGGCTGTGCCACCGGCCGACACAGCAC
CTTGGATCCCAAGGAGGTCTTTGCCCCATCGCCTACTCTCGCAGCCGCTA
ATCAAGCTGGAGCTAATGGAGGAAGTGATGCCCCCGGCGCTTCTTCTACG
GCCCTCAAGTCCATCGAGGACTACAACCAAGCGAACCCCGATGCTGCCAC
TGCTGCCAAAAGCGCGGCGTCGTCAGTGACCAAGCCTCAGGCCAGGTGCA
CCGTCAAGGCGGACGGGTCGGCCACGTGTCTGAATAAGGGATGTCAAAAG
GAGTTTCAAGTCAAGGAGAACCACCCAACGGCTTGCTGGTACGTGGAGAG
TCAAAGTCGTATTTTTATATATCATGCCGTCCCTTCCTCCCTTCCTCGCG
CACAGCGCATCCGCACCGCATCACCCTCTCTCTCGCTCTCTCTTGGCTGA
CGTTTTGCCTTCTCTTTCCCTGCGTCTTCTTCCCACCCTAACCCTATAAA
GCTACCACGCGTCCGGACCCGTCTTTCACGACGCGGGCAAGTTCTGGTCC
TGTTGTCCCGGGGTGATCAAGTACGACTTTGAGGAATTTTTGAAAATTCC
CGGATGTATGGTTAGTAGCCACCTTGATGGGAGCGAGGAGAGTTCGCGGT
TTTTCGAGTCGCATGCGAGAAAAAGGGAAGATCGGTGA
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Coding sequence (CDS) from alignment at chr7:422710..424247-

>NO07G01340.1 ID=NO07G01340.1|Name=NO07G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr7:422710..424247- (Nannochloropsis oceanica)
ATGAAGCTCTACTTCCACTACGAGGAGACCGACGACGCGGGTGATGTCGA
GGAAGCAAAAGCCTTAACTCTTAAACTCACACTACCAAAAAGCTGGGTGG
GACAGCCGCTGCTCCAAGTGCTGGAGCTCTTTCTTGAGAACTATAACAAC
AAGAAGGCCAGGCTCGAACCTTTGGACATATCCGGAGTGCATCTGGAAAA
AGCAGACGGTATGAAAATCCACACCACTGATATCGTGATGGATATTCTGA
GTGATCGCGATGACGTGTACGTCAAACATGGGGCGGAACAACCAGCCAAG
GCAAAGCGTACCCCGCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCTTCTTCTATCCCTGGAGCCACCACAGAAGGTA
GCACCGGCCTGCTGCGCTGCAAGAACTACGGATGCAACCAGTCTTTTGCC
CAAGAGACCAACACGGAGTCAGCCTGCCGCTTCCATAGGGCCCCCCCCGT
GTTTCACGACACGAAGAAAGGTTGGGCTTGTTGCACGAAGCGGGTTTATG
ACTGGGACGAGTTCCATACGATCGAGGGCTGTGCCACCGGCCGACACAGC
ACCTTGGATCCCAAGGAGGTCTTTGCCCCATCGCCTACTCTCGCAGCCGC
TAATCAAGCTGGAGCTAATGGAGGAAGTGATGCCCCCGGCGCTTCTTCTA
CGGCCCTCAAGTCCATCGAGGACTACAACCAAGCGAACCCCGATGCTGCC
ACTGCTGCCAAAAGCGCGGCGTCGTCAGTGACCAAGCCTCAGGCCAGGTG
CACCGTCAAGGCGGACGGGTCGGCCACGTGTCTGAATAAGGGATGTCAAA
AGGAGTTTCAAGTCAAGGAGAACCACCCAACGGCTTGCTGCTACCACGCG
TCCGGACCCGTCTTTCACGACGCGGGCAAGTTCTGGTCCTGTTGTCCCGG
GGTGATCAAGTACGACTTTGAGGAATTTTTGAAAATTCCCGGATGTATGG
TTAGTAGCCACCTTGATGGGAGCGAGGAGAGTTCGCGGTTTTTCGAGTCG
CATGCGAGAAAAAGGGAAGATCGGTGA
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Synonyms
Publications