NO07G01330.3, NO07G01330.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01330.3
Unique NameNO07G01330.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1380
Alignment locationchr7:420279..421998 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:420279..421998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01330.3 vs.
Match: EWM27266.1 (r-snare vamp72-family [Nannochloropsis gaditana])

HSP 1 Score: 295.0 bits (754), Expect = 1.700e-76
Identity = 148/174 (85.06%), Postives = 163/174 (93.68%), Query Frame = 0 
Query:    1 MAEHRSSGNIQFLGVARLQDRAIVASHAYNTIIDLNGVKEVLTSDQLSVRPGVYFSFASGGSAWHLVSDVEGRIFILISERSYPVRAANACLDDLQRSFLIKTGTKSLEVKEKGLDKTCGEMLRKLCEKYDDLLQVDKLAAVMNKVDSVKLVLQENVQVALANCVTLENIESAA 175
            MAE ++SGNI FLGVAR QDRAIVASHAYNT+IDL GVKEVL SDQLSVRPGV+FSFASGGS+WHL+SDVEGRIFILISER+YPVRAA+ACL++ QRSFL KTGTKSLEVKEKGLDK+ GEMLRKLCEKYD+L +VDKLAAVMNKVD+VKLVLQENVQVALANCV L+NIE AA
Sbjct:    1 MAERKASGNIHFLGVARFQDRAIVASHAYNTVIDLTGVKEVLKSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSGEMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAA 174
The following BLAST results are available for this feature:
BLAST of NO07G01330.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27266.11.700e-7685.06r-snare vamp72-family [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01330NO07G01330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01330.3NO07G01330.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01330.3.cds1NO07G01330.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01330.3.cds2NO07G01330.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01330.3.cds3NO07G01330.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01330.3 ID=NO07G01330.3|Name=NO07G01330.3|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp
CACACAGGCACTCGTCTCGCACATTCCTGTTCGAACACCCCCTACAGTCC
AAGATGGCAGAGCACAGATCCTCGGGCAACATCCAGTTCCTTGGTGTGGC
ACGTTTGCAAGACCGGGCAATCGTCGCCAGCCATGCCTACAACACGATCA
TCGACTTGAACGGTGTCAAGGAAGTGCTTACGAGCGACCAGCTTAGCGTC
CGCCCAGGGGTATATTTCTCTTTTGCTTCCGGTGGATCAGCATGGCATCT
GGTGTCCGACGTGGAAGGCCGCATATTTATCTTGATATCCGAGCGGTCAT
ATCCCGTCCGTGCCGCAAATGCGTGCTTGGATGATCTCCAGAGATCGTTC
CTTATCAAGACGGGCACCAAGAGTTTGGAAGTGAAAGAGAAGGGCCTGGA
CAAGACATGTGGGGAGATGCTGCGGAAGCTGTGCGAGAAGTATGATGATT
TATTGCAGGTGGATAAGCTCGCCGCGGTGATGAATAAAGTAGATTCTGTC
AAGTTGGTGCTGCAGGAGAACGTGCAGGTGGCGTTGGCGAATTGCGTAAC
GTTGGAGAATATTGAGAGTGCCGCGGGTATGTACATATGTACAGGGGGGG
GAAAGAGGAAAAGGGGAAGTCTTTTTTTTAAAATTTAATCTCTGGGTGCT
CCCACAATGATTTTGAGTGCTTGCTTGATTTGGGCTTGGATTTGGTTGCT
AAGTGAGGGGAAAGAAGGAGGGTGGGAAGGAGGGAGCTTGCTTGAATTCA
TTCTTTCCGTCTTCCCTTTCTGGATGCCTTGGGGTCTTTTAATTTTCACC
TTTGGCTGACTTGTTAATGCCCTTCTTATGGACAAATTGCAATATAGAGG
ATCTGCAAGCTCAGGCGGGCATGTTTAAAAAGAATGCCACCACCCTTAAG
AAGCAAATGTGGTGGAAGCAACTCCGAGTACGTACCCCTCCCTCCCTCCC
TCCCTCCCTCCTGATCTGATATCCCATCCCGTCCGTTTGAACGCGTGACT
AAAGCAGTGCAATCCGCTCTAAAAGCATCACAACGAGCCCGATCCTTCTC
CCTCCCTCCTCACTTGACTTCTCCCTCCCTCCTCTCCATTCCTCCCTCCC
TCCACATGCTACCGAAGAAGCTGGCCTTGGCCAAGCATCACTTTGTTGGT
CGTCCCAACCTACACTCACCCTCCCTCCATCCCTCCCTCTCACCCTTACT
CCCCAATCACTCAAAAGATGAAGCTGTTAGTGGCTCTGGTCATCGTGGCT
ATTCTCTTGGTGATAATTATCCCCATCGCTGTGAAAAGTAAGCGGTTCCA
CGACACCCACAAGAGAAATAAAATCTAAGGAGGAATCAGATTGAACTTTT
GTAGGAGGGAGGGCGGGCGGGCGATTTGAA
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protein sequence of NO07G01330.3

>NO07G01330.3-protein ID=NO07G01330.3-protein|Name=NO07G01330.3|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MAEHRSSGNIQFLGVARLQDRAIVASHAYNTIIDLNGVKEVLTSDQLSVR
PGVYFSFASGGSAWHLVSDVEGRIFILISERSYPVRAANACLDDLQRSFL
IKTGTKSLEVKEKGLDKTCGEMLRKLCEKYDDLLQVDKLAAVMNKVDSVK
LVLQENVQVALANCVTLENIESAAGMYICTGGGKRKRGSLFFKI*
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mRNA from alignment at chr7:420279..421998+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01330.3 ID=NO07G01330.3|Name=NO07G01330.3|organism=Nannochloropsis oceanica|type=mRNA|length=1720bp|location=Sequence derived from alignment at chr7:420279..421998+ (Nannochloropsis oceanica)
CACACAGGCACTCGTCTCGCACATTCCTGTTCGAACACCCCCTACAGTCC
AAGATGGCAGAGCACAGATCCTCGGGCAACATCCAGTAAGTGTGACGCCG
ACATGAGGCGCGTCTGTCTCTTTAACCTGCCATGTCAGCACTCCGTTCCG
GCAGCCCTTGCCATTAGTGCAGCACCTAGAGAGGAGAGGAGAGCGGTATG
GAGCAGTTTTGTCGACAATGCCAAACGGCGCCTCTCATTCATTTCCCTCT
CCACTTCCCCACCCCAATTTGCAGGTTCCTTGGTGTGGCACGTTTGCAAG
ACCGGGCAATCGTCGCCAGCCATGCCTACAACACGATCATCGACTTGAAC
GGTGTCAAGGAAGTGCTTACGAGCGACCAGCTTAGCGTCCGCCCAGGGGT
ATATTTCTCTTTTGCTTCCGGTGGATCAGCATGGCATCTGGTGTCCGACG
TGGAAGGCCGCATATTTATCTTGATATCCGAGCGGTCATATCCCGTCCGT
GCCGCAAATGCGTGCTTGGATGATCTCCAGAGATCGGTACGTGGGTAGTT
GAGCTGTGGTGAGAATGTTCGCCCCTCCCCCGCCCCCTTTCAAACGTCAT
CCGTGTCGGCGTTACGTTCTCTCTTTTTCCAGGTCTCTGCCCGTTGCCTT
ATACTTATATCCCTTCTATGTTTTGTCTACTCGACAGTTCCTTATCAAGA
CGGGCACCAAGAGTTTGGAAGTGAAAGAGAAGGGCCTGGACAAGACATGT
GGGGAGATGCTGCGGAAGCTGTGCGAGAAGTATGATGATTTATTGCAGGT
GGATAAGCTCGCCGCGGTGATGAATAAAGTAGATTCTGTCAAGTTGGTGC
TGCAGGAGAACGTGCAGGTGGCGTTGGCGAATTGCGTAACGTTGGAGAAT
ATTGAGAGTGCCGCGGGTATGTACATATGTACAGGGGGGGGAAAGAGGAA
AAGGGGAAGTCTTTTTTTTAAAATTTAATCTCTGGGTGCTCCCACAATGA
TTTTGAGTGCTTGCTTGATTTGGGCTTGGATTTGGTTGCTAAGTGAGGGG
AAAGAAGGAGGGTGGGAAGGAGGGAGCTTGCTTGAATTCATTCTTTCCGT
CTTCCCTTTCTGGATGCCTTGGGGTCTTTTAATTTTCACCTTTGGCTGAC
TTGTTAATGCCCTTCTTATGGACAAATTGCAATATAGAGGATCTGCAAGC
TCAGGCGGGCATGTTTAAAAAGAATGCCACCACCCTTAAGAAGCAAATGT
GGTGGAAGCAACTCCGAGTACGTACCCCTCCCTCCCTCCCTCCCTCCCTC
CTGATCTGATATCCCATCCCGTCCGTTTGAACGCGTGACTAAAGCAGTGC
AATCCGCTCTAAAAGCATCACAACGAGCCCGATCCTTCTCCCTCCCTCCT
CACTTGACTTCTCCCTCCCTCCTCTCCATTCCTCCCTCCCTCCACATGCT
ACCGAAGAAGCTGGCCTTGGCCAAGCATCACTTTGTTGGTCGTCCCAACC
TACACTCACCCTCCCTCCATCCCTCCCTCTCACCCTTACTCCCCAATCAC
TCAAAAGATGAAGCTGTTAGTGGCTCTGGTCATCGTGGCTATTCTCTTGG
TGATAATTATCCCCATCGCTGTGAAAAGTAAGCGGTTCCACGACACCCAC
AAGAGAAATAAAATCTAAGGAGGAATCAGATTGAACTTTTGTAGGAGGGA
GGGCGGGCGGGCGATTTGAA
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Coding sequence (CDS) from alignment at chr7:420279..421998+

>NO07G01330.3 ID=NO07G01330.3|Name=NO07G01330.3|organism=Nannochloropsis oceanica|type=CDS|length=585bp|location=Sequence derived from alignment at chr7:420279..421998+ (Nannochloropsis oceanica)
ATGGCAGAGCACAGATCCTCGGGCAACATCCAGTTCCTTGGTGTGGCACG
TTTGCAAGACCGGGCAATCGTCGCCAGCCATGCCTACAACACGATCATCG
ACTTGAACGGTGTCAAGGAAGTGCTTACGAGCGACCAGCTTAGCGTCCGC
CCAGGGGTATATTTCTCTTTTGCTTCCGGTGGATCAGCATGGCATCTGGT
GTCCGACGTGGAAGGCCGCATATTTATCTTGATATCCGAGCGGTCATATC
CCGTCCGTGCCGCAAATGCGTGCTTGGATGATCTCCAGAGATCGTTCCTT
ATCAAGACGGGCACCAAGAGTTTGGAAGTGAAAGAGAAGGGCCTGGACAA
GACATGTGGGGAGATGCTGCGGAAGCTGTGCGAGAAGTATGATGATTTAT
TGCAGGTGGATAAGCTCGCCGCGGTGATGAATAAAGTAGATTCTGTCAAG
TTGGTGCTGCAGGAGAACGTGCAGGTGGCGTTGGCGAATTGCGTAACGTT
GGAGAATATTGAGAGTGCCGCGGGTATGTACATATGTACAGGGGGGGGAA
AGAGGAAAAGGGGAAGTCTTTTTTTTAAAATTTAA
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Synonyms
Publications