NO07G01280.1, NO07G01280.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G01280.1
Unique Name	NO07G01280.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2364
Alignment location	chr7:405801..408164 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:405801..408164 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO07G01280.1 vs.

BLAST of NO07G01280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G01280	NO07G01280	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G01280.1	NO07G01280.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G01280.1.cds1	NO07G01280.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:405801..408164+
coding sequence from alignment at chr7:405801..408164+

mRNA sequence

>NO07G01280.1 ID=NO07G01280.1|Name=NO07G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp
ACAGCACATACAGCCACACACAGCATGAAGCACCACGACCGCAACCACGA
GGAAGGAAAAGGAAGCGAAAATGACAATGATGAGATGAAAGAGGAGGAGA
AGCAGCGGCATGAGGAGGAGGAACACTACGGTCTGCCTCCCTTCCCCTAC
CAGATCACCCACACCCCCGGCGGCGGCAGCAGCGGCGGCGGGCTCGTGGC
AACCCTCCTTCATACGGCCCAGCTGCAGGAATGGGAGGCCTTCCGCAAAG
AAATAGCGGTGGCTCGTGCCACTGCCAAAGAACGCGAGGTGCGATTGGCG
GCGATGAAGCGAATGGAGGAGACGCGCACCAGGGATCTGGAAGCCATGGA
GACCAAACTTCGGCAGTTGCAGCAGGAGCTGGACGAAGCCCGCAAGGCAG
CCGCTGCTCCTTACGCCAACGGACATTCTTCCTCCTCCTCATCCCGTACA
TTTGTCGGACAATTTGGCAAGCAGATGCAAGCGCTGCAAAGACAAGTCCA
CTCACTCACCACCTCCCTCCCCCAGCTTGAAGCCCGTATGTCCACCCTCA
CCGGGCGTGACGCTGCCGACACGAAGGCACGAGCCGCCTGCACCGCCGGG
CTAGAACAATGCCACATGTTGCTTCAGTCCTCTCAAACCGCGGCAGACTC
GGCACTAGCTCAGTCCCAACGACTCGGAGCGGCCCTCACGCGCGTCACCC
AGGAAAAAGAAAAGCTCACCGTGCAAGTCCAAGAGCACACAGCGCGGGAA
GCAAATCTAATTGAAACCCTACGTCACAAAGAAAGAACACTCCAGGAAAC
ATACAGTAATGAGAAAGAGGCCGTGCAAGCCCTAGACAAGGAACGGGTGA
CCAGCCGTCAAAAGGACGAAGAGATCACCTCCCTCCTCACCGAGCTCTCA
GCCGTGCGCGCCCGAAATCTCGACCTCTCCTTCCGCCTCAACGAAGCAGC
AGAAGCGCGTGAAGACGCTCACCGGCTTCGAATTGAGCTTGATGGTTTCA
ACGCTACCTTAGGTGAGAAAGATGAGGCCTTCCAACAAGTGTCGGAAAAG
AAGGTGGAACTAGAACGGCAAGTCGCCAAGCTGGCTCGTAACCTTGAGGA
AGAACACAGGGTAGTGAGGGAGAGGAGGGAGGAAATAGGGGCCCTGAAGA
AGGAGCTGCAGGAGAGCCGGCTTTTGAGTCAGTTGCTGTCGCGAAGGACG
GCTGGAGCGGCTGGTGCTGGTGTTGGTGTGGGGGGCGGGGGGGGAGGAAG
AGGAGGGGGAGAGAAGATGAAGAAGCGACATTTTTCGCGGGCGGTGGTGG
AGGATTATGATGAGGGTGAGCTGACGGAGGCAGGGATGCCGAGAAAATTG
CAGCGACAGCAGCAGCAGCAACAGGTGGGTGAAGGGGAGGAGGAGGAGGA
GAAGGAGGAGGAGGAGGAGGAGGAGGAGAATGAAGAAGAAGAAGAGAAGA
TGGAAAAGGGCCTGCGAAGAACGGGCCGTACTCGAGGACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGGGGGAGGAGGAAGGAAGATTGAAGGAAAA
GAAGGAAAAGGAGATGGATGAAGAAAGGGCGAGCGGGTTGACCGATTGTG
GTGATCCGTTTTTCTTTGGAGAGGAGCAGGAAAAGCTGCAGGTCAAGGCA
CCGACGTCTCAACGATATGCGACGGGAGGGATGGAGAGAGGAGGAGGAGT
GAAACAGCACTTGAACAAGAAGAAGACGACGACGATGAAGAAGAAAAAAA
GGATTGGTGGTGGGAAAAATGGCGCGAATGGAACATGCAAGCAGTGCGAG
CAGAAGCCGTCGGGATTGTCTTATTTGTGTCAGTTGTGCTTACAGGAGGT
GTGTGCGGAGTGCGTGAAAGAGGGTGTGGATGGTGCTGGGCCGACATCCC
GGGGGTTTTTGTGTATGGAATGTCAGTAGTATGATGAAGGGAGGGAGGGA
GGGGAAGAGCGAGGGAAGGAGAGATGGATGGAGGGATGGAGAGAATGAGG
AGTTGTTTATGTGTACTTACCCACCTTTGCATTTGTATACAGCTTTTGTG
AATTGTTTGAATGTTTGTCGGTTCAATCAGTCAACAGATAAATTTGTGCA
CTCGTTTGGGGGGAGGGGGGGGAAGAAGAGAGAGAGAGGGAGAGAGGGAG
ATAAAGAGTGTAAGAGGGAGGGAGGGACAGAGGGTGAAAGATGGAGATTG
AAAAAGGATAAATGCACATTTACATATGCATATATATATATATATATATA
TATATCAAATTTGTGCATGTATGTGTGTATGTTGCAGTCATGACGATGCC
CCTAGAGCAGAAAGATGCAACATGAAAAAATGCAATGAAAGGGGGAGAAG
AAAGAGAGAACGAA

protein sequence of NO07G01280.1

>NO07G01280.1-protein ID=NO07G01280.1-protein|Name=NO07G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MKHHDRNHEEGKGSENDNDEMKEEEKQRHEEEEHYGLPPFPYQITHTPGG
GSSGGGLVATLLHTAQLQEWEAFRKEIAVARATAKEREVRLAAMKRMEET
RTRDLEAMETKLRQLQQELDEARKAAAAPYANGHSSSSSSRTFVGQFGKQ
MQALQRQVHSLTTSLPQLEARMSTLTGRDAADTKARAACTAGLEQCHMLL
QSSQTAADSALAQSQRLGAALTRVTQEKEKLTVQVQEHTAREANLIETLR
HKERTLQETYSNEKEAVQALDKERVTSRQKDEEITSLLTELSAVRARNLD
LSFRLNEAAEAREDAHRLRIELDGFNATLGEKDEAFQQVSEKKVELERQV
AKLARNLEEEHRVVRERREEIGALKKELQESRLLSQLLSRRTAGAAGAGV
GVGGGGGGRGGGEKMKKRHFSRAVVEDYDEGELTEAGMPRKLQRQQQQQQ
VGEGEEEEEKEEEEEEEENEEEEEKMEKGLRRTGRTRGQQQQQQQQQQQG
EEEGRLKEKKEKEMDEERASGLTDCGDPFFFGEEQEKLQVKAPTSQRYAT
GGMERGGGVKQHLNKKKTTTMKKKKRIGGGKNGANGTCKQCEQKPSGLSY
LCQLCLQEVCAECVKEGVDGAGPTSRGFLCMECQ*

mRNA from alignment at chr7:405801..408164+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G01280.1 ID=NO07G01280.1|Name=NO07G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp|location=Sequence derived from alignment at chr7:405801..408164+ (Nannochloropsis oceanica)
ACAGCACATACAGCCACACACAGCATGAAGCACCACGACCGCAACCACGA
GGAAGGAAAAGGAAGCGAAAATGACAATGATGAGATGAAAGAGGAGGAGA
AGCAGCGGCATGAGGAGGAGGAACACTACGGTCTGCCTCCCTTCCCCTAC
CAGATCACCCACACCCCCGGCGGCGGCAGCAGCGGCGGCGGGCTCGTGGC
AACCCTCCTTCATACGGCCCAGCTGCAGGAATGGGAGGCCTTCCGCAAAG
AAATAGCGGTGGCTCGTGCCACTGCCAAAGAACGCGAGGTGCGATTGGCG
GCGATGAAGCGAATGGAGGAGACGCGCACCAGGGATCTGGAAGCCATGGA
GACCAAACTTCGGCAGTTGCAGCAGGAGCTGGACGAAGCCCGCAAGGCAG
CCGCTGCTCCTTACGCCAACGGACATTCTTCCTCCTCCTCATCCCGTACA
TTTGTCGGACAATTTGGCAAGCAGATGCAAGCGCTGCAAAGACAAGTCCA
CTCACTCACCACCTCCCTCCCCCAGCTTGAAGCCCGTATGTCCACCCTCA
CCGGGCGTGACGCTGCCGACACGAAGGCACGAGCCGCCTGCACCGCCGGG
CTAGAACAATGCCACATGTTGCTTCAGTCCTCTCAAACCGCGGCAGACTC
GGCACTAGCTCAGTCCCAACGACTCGGAGCGGCCCTCACGCGCGTCACCC
AGGAAAAAGAAAAGCTCACCGTGCAAGTCCAAGAGCACACAGCGCGGGAA
GCAAATCTAATTGAAACCCTACGTCACAAAGAAAGAACACTCCAGGAAAC
ATACAGTAATGAGAAAGAGGCCGTGCAAGCCCTAGACAAGGAACGGGTGA
CCAGCCGTCAAAAGGACGAAGAGATCACCTCCCTCCTCACCGAGCTCTCA
GCCGTGCGCGCCCGAAATCTCGACCTCTCCTTCCGCCTCAACGAAGCAGC
AGAAGCGCGTGAAGACGCTCACCGGCTTCGAATTGAGCTTGATGGTTTCA
ACGCTACCTTAGGTGAGAAAGATGAGGCCTTCCAACAAGTGTCGGAAAAG
AAGGTGGAACTAGAACGGCAAGTCGCCAAGCTGGCTCGTAACCTTGAGGA
AGAACACAGGGTAGTGAGGGAGAGGAGGGAGGAAATAGGGGCCCTGAAGA
AGGAGCTGCAGGAGAGCCGGCTTTTGAGTCAGTTGCTGTCGCGAAGGACG
GCTGGAGCGGCTGGTGCTGGTGTTGGTGTGGGGGGCGGGGGGGGAGGAAG
AGGAGGGGGAGAGAAGATGAAGAAGCGACATTTTTCGCGGGCGGTGGTGG
AGGATTATGATGAGGGTGAGCTGACGGAGGCAGGGATGCCGAGAAAATTG
CAGCGACAGCAGCAGCAGCAACAGGTGGGTGAAGGGGAGGAGGAGGAGGA
GAAGGAGGAGGAGGAGGAGGAGGAGGAGAATGAAGAAGAAGAAGAGAAGA
TGGAAAAGGGCCTGCGAAGAACGGGCCGTACTCGAGGACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGGGGGAGGAGGAAGGAAGATTGAAGGAAAA
GAAGGAAAAGGAGATGGATGAAGAAAGGGCGAGCGGGTTGACCGATTGTG
GTGATCCGTTTTTCTTTGGAGAGGAGCAGGAAAAGCTGCAGGTCAAGGCA
CCGACGTCTCAACGATATGCGACGGGAGGGATGGAGAGAGGAGGAGGAGT
GAAACAGCACTTGAACAAGAAGAAGACGACGACGATGAAGAAGAAAAAAA
GGATTGGTGGTGGGAAAAATGGCGCGAATGGAACATGCAAGCAGTGCGAG
CAGAAGCCGTCGGGATTGTCTTATTTGTGTCAGTTGTGCTTACAGGAGGT
GTGTGCGGAGTGCGTGAAAGAGGGTGTGGATGGTGCTGGGCCGACATCCC
GGGGGTTTTTGTGTATGGAATGTCAGTAGTATGATGAAGGGAGGGAGGGA
GGGGAAGAGCGAGGGAAGGAGAGATGGATGGAGGGATGGAGAGAATGAGG
AGTTGTTTATGTGTACTTACCCACCTTTGCATTTGTATACAGCTTTTGTG
AATTGTTTGAATGTTTGTCGGTTCAATCAGTCAACAGATAAATTTGTGCA
CTCGTTTGGGGGGAGGGGGGGGAAGAAGAGAGAGAGAGGGAGAGAGGGAG
ATAAAGAGTGTAAGAGGGAGGGAGGGACAGAGGGTGAAAGATGGAGATTG
AAAAAGGATAAATGCACATTTACATATGCATATATATATATATATATATA
TATATCAAATTTGTGCATGTATGTGTGTATGTTGCAGTCATGACGATGCC
CCTAGAGCAGAAAGATGCAACATGAAAAAATGCAATGAAAGGGGGAGAAG
AAAGAGAGAACGAA

Coding sequence (CDS) from alignment at chr7:405801..408164+

>NO07G01280.1 ID=NO07G01280.1|Name=NO07G01280.1|organism=Nannochloropsis oceanica|type=CDS|length=1905bp|location=Sequence derived from alignment at chr7:405801..408164+ (Nannochloropsis oceanica)
ATGAAGCACCACGACCGCAACCACGAGGAAGGAAAAGGAAGCGAAAATGA
CAATGATGAGATGAAAGAGGAGGAGAAGCAGCGGCATGAGGAGGAGGAAC
ACTACGGTCTGCCTCCCTTCCCCTACCAGATCACCCACACCCCCGGCGGC
GGCAGCAGCGGCGGCGGGCTCGTGGCAACCCTCCTTCATACGGCCCAGCT
GCAGGAATGGGAGGCCTTCCGCAAAGAAATAGCGGTGGCTCGTGCCACTG
CCAAAGAACGCGAGGTGCGATTGGCGGCGATGAAGCGAATGGAGGAGACG
CGCACCAGGGATCTGGAAGCCATGGAGACCAAACTTCGGCAGTTGCAGCA
GGAGCTGGACGAAGCCCGCAAGGCAGCCGCTGCTCCTTACGCCAACGGAC
ATTCTTCCTCCTCCTCATCCCGTACATTTGTCGGACAATTTGGCAAGCAG
ATGCAAGCGCTGCAAAGACAAGTCCACTCACTCACCACCTCCCTCCCCCA
GCTTGAAGCCCGTATGTCCACCCTCACCGGGCGTGACGCTGCCGACACGA
AGGCACGAGCCGCCTGCACCGCCGGGCTAGAACAATGCCACATGTTGCTT
CAGTCCTCTCAAACCGCGGCAGACTCGGCACTAGCTCAGTCCCAACGACT
CGGAGCGGCCCTCACGCGCGTCACCCAGGAAAAAGAAAAGCTCACCGTGC
AAGTCCAAGAGCACACAGCGCGGGAAGCAAATCTAATTGAAACCCTACGT
CACAAAGAAAGAACACTCCAGGAAACATACAGTAATGAGAAAGAGGCCGT
GCAAGCCCTAGACAAGGAACGGGTGACCAGCCGTCAAAAGGACGAAGAGA
TCACCTCCCTCCTCACCGAGCTCTCAGCCGTGCGCGCCCGAAATCTCGAC
CTCTCCTTCCGCCTCAACGAAGCAGCAGAAGCGCGTGAAGACGCTCACCG
GCTTCGAATTGAGCTTGATGGTTTCAACGCTACCTTAGGTGAGAAAGATG
AGGCCTTCCAACAAGTGTCGGAAAAGAAGGTGGAACTAGAACGGCAAGTC
GCCAAGCTGGCTCGTAACCTTGAGGAAGAACACAGGGTAGTGAGGGAGAG
GAGGGAGGAAATAGGGGCCCTGAAGAAGGAGCTGCAGGAGAGCCGGCTTT
TGAGTCAGTTGCTGTCGCGAAGGACGGCTGGAGCGGCTGGTGCTGGTGTT
GGTGTGGGGGGCGGGGGGGGAGGAAGAGGAGGGGGAGAGAAGATGAAGAA
GCGACATTTTTCGCGGGCGGTGGTGGAGGATTATGATGAGGGTGAGCTGA
CGGAGGCAGGGATGCCGAGAAAATTGCAGCGACAGCAGCAGCAGCAACAG
GTGGGTGAAGGGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGA
GGAGAATGAAGAAGAAGAAGAGAAGATGGAAAAGGGCCTGCGAAGAACGG
GCCGTACTCGAGGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGG
GAGGAGGAAGGAAGATTGAAGGAAAAGAAGGAAAAGGAGATGGATGAAGA
AAGGGCGAGCGGGTTGACCGATTGTGGTGATCCGTTTTTCTTTGGAGAGG
AGCAGGAAAAGCTGCAGGTCAAGGCACCGACGTCTCAACGATATGCGACG
GGAGGGATGGAGAGAGGAGGAGGAGTGAAACAGCACTTGAACAAGAAGAA
GACGACGACGATGAAGAAGAAAAAAAGGATTGGTGGTGGGAAAAATGGCG
CGAATGGAACATGCAAGCAGTGCGAGCAGAAGCCGTCGGGATTGTCTTAT
TTGTGTCAGTTGTGCTTACAGGAGGTGTGTGCGGAGTGCGTGAAAGAGGG
TGTGGATGGTGCTGGGCCGACATCCCGGGGGTTTTTGTGTATGGAATGTC
AGTAG

Synonyms

Publications