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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:390364..392604 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G01220.1 vs.
Match: EWM27239.1 (hypothetical protein Naga_100038g16 [Nannochloropsis gaditana]) HSP 1 Score: 495.0 bits (1273), Expect = 4.200e-136 Identity = 345/664 (51.96%), Postives = 422/664 (63.55%), Query Frame = 0
Query: 92 TQGLGSMLSTPLTPSASLIASSVVEADAKQQQLLKDSLTADLKLLLHEFERFQQATAAAAGTGGVGEEEAAERSTKVEFFLGYIERVLHDLAGADASKLQDLEVRIKTSLLPLKGQVVSQLAAQNNNSPPPHKEQQSSWFHPSSTCSSLSSSSSVS---SVHTTPPGSPLAREETVMSTYGPFTHSRVAAADAVFLSSSSAASRLMPPVSFRRDQSDISGITSCSSSSSSCGGEGGAGHMDDLDLECFSLIMDE---AAATAPFTTAGNGGKDLPANGSCVDDDMTDAGSLTSEESS-VFVSSPRESSSSLSTVSTGLDPTSSNSGNKRTLPLEFPSSSSSSSSSSLSLATASSVSTDTLQQPLKRARSVILPTSSSSSSSCATHAPPCLASSSTSSSSSFSSPFSSSSVATVAAADVSKPLLRQVEYQCGACADTYTAASSLNPWWALERQECPKCKKVQVPRIDINLPANTMEYHPALLAEEGDDDDDDEVGGGREGGMMMMPG---GGDGHGHLEEREEGETSEKGSGGSSVLEEDEEAVLSPMQASQLLSLLEHARTCPGNHAAEKHQAVCTSAKYLMLHVRDCDGRTLDGEACGFSWCRPCKHLLGHLVRCYEAEKCQICCFSHQEEEEKVEKKVMMSVEEMIEEKGMRVDTYRSLTSL 746
++G + PL S +ASSV EADAKQQQLLKDSLTADLKLLLHEFERFQQATA + G E EA ER+ KVEFFLGYI +VL +LAGADA KLQ+LEVRIKTSLLPLKGQVV++LA+ +S Q PSS+ S S SSS S S HTTPP SP++ E+ + G + AA LMP V +R S SG T+CS +S E G G +D D+EC SL+M+E TA GG++ G D+D+TDA SL SEESS VF SP E+S L T+S GL G KR + S S+ SL LA+AS S +++QQ LKRARS ++P+ SS+S S++T+SS S S S +++ A KP +RQVEYQCG CA++Y+AA+SLNPWWALE+QECP+CKK+Q+PRIDINLPANTM+YHPALLAEEGDDDD++E G GG ++PG G G G GE S G GG V EE++ SP QASQ+L L+ HARTCPG+H +E H+AVCTS KYLMLHVRDCDG+TLDGEACGFSWCRPCKHLLGHLVRCYE+E+C IC ++ E E+ V E +R YR+LTSL
Sbjct: 69 SEGRYTSFLAPLKSLTSPVASSVFEADAKQQQLLKDSLTADLKLLLHEFERFQQATALVSREGSK-EVEAMERAAKVEFFLGYIGKVLQELAGADAPKLQELEVRIKTSLLPLKGQVVNKLASSLLSSSALGGLQH----EPSSSASIPSPSSSPSSSCSTHTTPPISPVSGEKMTVQDDGRRERTHPTAA------------ALMPSVRVQRLDSSSSGATTCSENS-----EEGRGQLD--DMECLSLLMEEDGQGLGRPQDRTA--GGREW---GLGPDEDVTDAASLVSEESSNVFAPSPGEASEMLETISRGL-----GLGQKRL-------ALSEGSTGSLGLASASFTSVESMQQ-LKRARSTVIPSISSNS-----------ISTTTTSSVSVGHGSSDVSEPSMSVASAEKPQVRQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEEGDDDDEEE--GLGLGGSGLVPGEEFRGMGKG-------GEDSAVG-GGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSIC---RPQKREPCEEAVACKRE---TSGAVREGVYRALTSL 663
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G01220.1 ID=NO07G01220.1|Name=NO07G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp ATGTCCTCCCCCAAGAACATTCTGGCCCCCGCAAGCTTGTCCCTAAACAA TTACAATAAACCCAGCCACGATCTCGGCAGCCCAAAGACGCAACACCATC ACCATGGCCTGCATCATCAGCACCAGCACAAGCAGCAGTACCAGCACCAA CAGCAACTGCAGCACGCCCATGTTCTCGGTGGCAAATCAGTAGCCGGTTC CAACAAGATCCTTCCTTTCACCTCATCTATGGATGAAGTTAAATATGCCG CTGGCGGGCTGATCAAGCCCGGGACGCAAGGCCTGGGCAGCATGCTCTCT ACACCCTTGACGCCCTCGGCTTCTCTTATTGCATCGTCGGTGGTAGAGGC CGATGCAAAGCAACAACAACTGCTGAAGGATTCCCTCACCGCCGACCTCA AATTGCTCCTGCACGAATTCGAACGCTTCCAGCAGGCCACTGCAGCAGCA GCGGGAACAGGAGGCGTGGGCGAGGAGGAGGCAGCTGAGCGATCGACGAA AGTGGAGTTCTTTTTGGGATACATTGAGCGAGTTCTCCACGATTTGGCAG GGGCTGACGCATCGAAACTGCAGGATCTCGAGGTGCGGATCAAGACAAGT CTACTACCACTCAAGGGCCAGGTGGTTAGCCAGCTTGCGGCGCAAAATAA TAACTCCCCTCCTCCCCATAAGGAGCAGCAGTCATCTTGGTTCCATCCTT CTTCCACCTGCTCCTCCCTCTCCTCCTCTTCTTCCGTCTCCAGCGTGCAC ACAACTCCTCCTGGATCTCCCTTGGCAAGGGAGGAGACGGTGATGAGCAC CTACGGTCCCTTTACCCACTCCCGCGTCGCAGCAGCAGACGCAGTCTTTC TCTCCTCTTCCTCTGCTGCTTCTCGGCTGATGCCGCCTGTGAGTTTCCGG AGGGATCAGAGTGACATAAGTGGGATTACGTCGTGCTCGTCATCATCGTC GTCATGCGGGGGGGAAGGAGGTGCGGGGCATATGGACGATTTAGATTTGG AGTGTTTTAGCTTGATAATGGACGAGGCTGCCGCTACTGCTCCTTTTACT ACTGCAGGTAATGGTGGGAAGGATCTGCCGGCCAATGGCTCATGTGTTGA TGATGACATGACGGATGCTGGCTCTCTAACTTCAGAGGAAAGCAGCGTGT TTGTGTCCTCCCCCCGGGAGTCCTCCTCTTCGCTCAGCACTGTTAGTACG GGCTTGGACCCAACAAGCAGCAACAGTGGAAATAAGCGGACCTTGCCCTT AGAATTTCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCTTTCTCTGG CCACAGCGTCCTCCGTATCTACAGACACTCTGCAGCAGCCGCTCAAGCGC GCCCGCAGCGTCATCCTACCCACCAGCAGCAGCAGCAGCAGCAGTTGTGC TACGCATGCACCTCCCTGCCTCGCCTCCTCCTCCACCTCCTCCTCTTCTT CTTTCTCTTCCCCTTTCTCTTCCTCTTCGGTGGCGACAGTGGCAGCAGCA GATGTCAGCAAGCCTCTCCTTCGTCAGGTTGAGTATCAGTGCGGTGCTTG CGCCGACACCTACACCGCTGCCTCCTCCCTCAATCCCTGGTGGGCCCTCG AGCGACAGGAGTGTCCCAAGTGCAAGAAGGTTCAAGTTCCACGCATTGAC ATAAACCTGCCTGCCAACACCATGGAATACCACCCGGCTTTGCTCGCGGA GGAAGGCGATGATGACGATGATGATGAGGTGGGAGGCGGGAGGGAGGGAG GGATGATGATGATGCCGGGGGGAGGGGATGGACATGGACATTTGGAGGAA AGAGAGGAGGGAGAGACGAGTGAGAAAGGGAGCGGTGGAAGTAGCGTACT AGAGGAGGACGAGGAAGCAGTGTTGAGCCCTATGCAAGCTTCACAGCTGT TGAGTTTGTTGGAGCATGCGCGGACATGCCCGGGCAATCATGCTGCCGAG AAACACCAGGCTGTGTGTACGAGTGCCAAGTATCTCATGTTGCATGTGAG GGATTGTGATGGCAGGACGTTAGATGGGGAGGCTTGTGGATTCTCGTGGT GCAGGCCTTGCAAACACTTGCTCGGGCACCTGGTCCGGTGTTACGAAGCC GAGAAGTGTCAGATCTGCTGTTTCTCACACCAAGAAGAGGAGGAGAAAGT GGAAAAGAAGGTGATGATGAGTGTGGAGGAGATGATTGAGGAGAAAGGAA TGAGGGTCGACACCTACAGGAGCTTGACGAGCTTGAGCTGA back to topprotein sequence of NO07G01220.1 >NO07G01220.1-protein ID=NO07G01220.1-protein|Name=NO07G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=747bp MSSPKNILAPASLSLNNYNKPSHDLGSPKTQHHHHGLHHQHQHKQQYQHQ QQLQHAHVLGGKSVAGSNKILPFTSSMDEVKYAAGGLIKPGTQGLGSMLS TPLTPSASLIASSVVEADAKQQQLLKDSLTADLKLLLHEFERFQQATAAA AGTGGVGEEEAAERSTKVEFFLGYIERVLHDLAGADASKLQDLEVRIKTS LLPLKGQVVSQLAAQNNNSPPPHKEQQSSWFHPSSTCSSLSSSSSVSSVH TTPPGSPLAREETVMSTYGPFTHSRVAAADAVFLSSSSAASRLMPPVSFR RDQSDISGITSCSSSSSSCGGEGGAGHMDDLDLECFSLIMDEAAATAPFT TAGNGGKDLPANGSCVDDDMTDAGSLTSEESSVFVSSPRESSSSLSTVST GLDPTSSNSGNKRTLPLEFPSSSSSSSSSSLSLATASSVSTDTLQQPLKR ARSVILPTSSSSSSSCATHAPPCLASSSTSSSSSFSSPFSSSSVATVAAA DVSKPLLRQVEYQCGACADTYTAASSLNPWWALERQECPKCKKVQVPRID INLPANTMEYHPALLAEEGDDDDDDEVGGGREGGMMMMPGGGDGHGHLEE REEGETSEKGSGGSSVLEEDEEAVLSPMQASQLLSLLEHARTCPGNHAAE KHQAVCTSAKYLMLHVRDCDGRTLDGEACGFSWCRPCKHLLGHLVRCYEA EKCQICCFSHQEEEEKVEKKVMMSVEEMIEEKGMRVDTYRSLTSLS* back to topmRNA from alignment at chr7:390364..392604+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G01220.1 ID=NO07G01220.1|Name=NO07G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp|location=Sequence derived from alignment at chr7:390364..392604+ (Nannochloropsis oceanica) ATGTCCTCCCCCAAGAACATTCTGGCCCCCGCAAGCTTGTCCCTAAACAA
TTACAATAAACCCAGCCACGATCTCGGCAGCCCAAAGACGCAACACCATC
ACCATGGCCTGCATCATCAGCACCAGCACAAGCAGCAGTACCAGCACCAA
CAGCAACTGCAGCACGCCCATGTTCTCGGTGGCAAATCAGTAGCCGGTTC
CAACAAGATCCTTCCTTTCACCTCATCTATGGATGAAGTTAAATATGCCG
CTGGCGGGCTGATCAAGCCCGGGACGCAAGGCCTGGGCAGCATGCTCTCT
ACACCCTTGACGCCCTCGGCTTCTCTTATTGCATCGTCGGTGGTAGAGGC
CGATGCAAAGCAACAACAACTGCTGAAGGATTCCCTCACCGCCGACCTCA
AATTGCTCCTGCACGAATTCGAACGCTTCCAGCAGGCCACTGCAGCAGCA
GCGGGAACAGGAGGCGTGGGCGAGGAGGAGGCAGCTGAGCGATCGACGAA
AGTGGAGTTCTTTTTGGGATACATTGAGCGAGTTCTCCACGATTTGGCAG
GGGCTGACGCATCGAAACTGCAGGATCTCGAGGTGCGGATCAAGACAAGT
CTACTACCACTCAAGGGCCAGGTGGTTAGCCAGCTTGCGGCGCAAAATAA
TAACTCCCCTCCTCCCCATAAGGAGCAGCAGTCATCTTGGTTCCATCCTT
CTTCCACCTGCTCCTCCCTCTCCTCCTCTTCTTCCGTCTCCAGCGTGCAC
ACAACTCCTCCTGGATCTCCCTTGGCAAGGGAGGAGACGGTGATGAGCAC
CTACGGTCCCTTTACCCACTCCCGCGTCGCAGCAGCAGACGCAGTCTTTC
TCTCCTCTTCCTCTGCTGCTTCTCGGCTGATGCCGCCTGTGAGTTTCCGG
AGGGATCAGAGTGACATAAGTGGGATTACGTCGTGCTCGTCATCATCGTC
GTCATGCGGGGGGGAAGGAGGTGCGGGGCATATGGACGATTTAGATTTGG
AGTGTTTTAGCTTGATAATGGACGAGGCTGCCGCTACTGCTCCTTTTACT
ACTGCAGGTAATGGTGGGAAGGATCTGCCGGCCAATGGCTCATGTGTTGA
TGATGACATGACGGATGCTGGCTCTCTAACTTCAGAGGAAAGCAGCGTGT
TTGTGTCCTCCCCCCGGGAGTCCTCCTCTTCGCTCAGCACTGTTAGTACG
GGCTTGGACCCAACAAGCAGCAACAGTGGAAATAAGCGGACCTTGCCCTT
AGAATTTCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCTTTCTCTGG
CCACAGCGTCCTCCGTATCTACAGACACTCTGCAGCAGCCGCTCAAGCGC
GCCCGCAGCGTCATCCTACCCACCAGCAGCAGCAGCAGCAGCAGTTGTGC
TACGCATGCACCTCCCTGCCTCGCCTCCTCCTCCACCTCCTCCTCTTCTT
CTTTCTCTTCCCCTTTCTCTTCCTCTTCGGTGGCGACAGTGGCAGCAGCA
GATGTCAGCAAGCCTCTCCTTCGTCAGGTTGAGTATCAGTGCGGTGCTTG
CGCCGACACCTACACCGCTGCCTCCTCCCTCAATCCCTGGTGGGCCCTCG
AGCGACAGGAGTGTCCCAAGTGCAAGAAGGTTCAAGTTCCACGCATTGAC
ATAAACCTGCCTGCCAACACCATGGAATACCACCCGGCTTTGCTCGCGGA
GGAAGGCGATGATGACGATGATGATGAGGTGGGAGGCGGGAGGGAGGGAG
GGATGATGATGATGCCGGGGGGAGGGGATGGACATGGACATTTGGAGGAA
AGAGAGGAGGGAGAGACGAGTGAGAAAGGGAGCGGTGGAAGTAGCGTACT
AGAGGAGGACGAGGAAGCAGTGTTGAGCCCTATGCAAGCTTCACAGCTGT
TGAGTTTGTTGGAGCATGCGCGGACATGCCCGGGCAATCATGCTGCCGAG
AAACACCAGGCTGTGTGTACGAGTGCCAAGTATCTCATGTTGCATGTGAG
GGATTGTGATGGCAGGACGTTAGATGGGGAGGCTTGTGGATTCTCGTGGT
GCAGGCCTTGCAAACACTTGCTCGGGCACCTGGTCCGGTGTTACGAAGCC
GAGAAGTGTCAGATCTGCTGTTTCTCACACCAAGAAGAGGAGGAGAAAGT
GGAAAAGAAGGTGATGATGAGTGTGGAGGAGATGATTGAGGAGAAAGGAA
TGAGGGTCGACACCTACAGGAGCTTGACGAGCTTGAGCTGA back to topCoding sequence (CDS) from alignment at chr7:390364..392604+ >NO07G01220.1 ID=NO07G01220.1|Name=NO07G01220.1|organism=Nannochloropsis oceanica|type=CDS|length=2241bp|location=Sequence derived from alignment at chr7:390364..392604+ (Nannochloropsis oceanica) ATGTCCTCCCCCAAGAACATTCTGGCCCCCGCAAGCTTGTCCCTAAACAA TTACAATAAACCCAGCCACGATCTCGGCAGCCCAAAGACGCAACACCATC ACCATGGCCTGCATCATCAGCACCAGCACAAGCAGCAGTACCAGCACCAA CAGCAACTGCAGCACGCCCATGTTCTCGGTGGCAAATCAGTAGCCGGTTC CAACAAGATCCTTCCTTTCACCTCATCTATGGATGAAGTTAAATATGCCG CTGGCGGGCTGATCAAGCCCGGGACGCAAGGCCTGGGCAGCATGCTCTCT ACACCCTTGACGCCCTCGGCTTCTCTTATTGCATCGTCGGTGGTAGAGGC CGATGCAAAGCAACAACAACTGCTGAAGGATTCCCTCACCGCCGACCTCA AATTGCTCCTGCACGAATTCGAACGCTTCCAGCAGGCCACTGCAGCAGCA GCGGGAACAGGAGGCGTGGGCGAGGAGGAGGCAGCTGAGCGATCGACGAA AGTGGAGTTCTTTTTGGGATACATTGAGCGAGTTCTCCACGATTTGGCAG GGGCTGACGCATCGAAACTGCAGGATCTCGAGGTGCGGATCAAGACAAGT CTACTACCACTCAAGGGCCAGGTGGTTAGCCAGCTTGCGGCGCAAAATAA TAACTCCCCTCCTCCCCATAAGGAGCAGCAGTCATCTTGGTTCCATCCTT CTTCCACCTGCTCCTCCCTCTCCTCCTCTTCTTCCGTCTCCAGCGTGCAC ACAACTCCTCCTGGATCTCCCTTGGCAAGGGAGGAGACGGTGATGAGCAC CTACGGTCCCTTTACCCACTCCCGCGTCGCAGCAGCAGACGCAGTCTTTC TCTCCTCTTCCTCTGCTGCTTCTCGGCTGATGCCGCCTGTGAGTTTCCGG AGGGATCAGAGTGACATAAGTGGGATTACGTCGTGCTCGTCATCATCGTC GTCATGCGGGGGGGAAGGAGGTGCGGGGCATATGGACGATTTAGATTTGG AGTGTTTTAGCTTGATAATGGACGAGGCTGCCGCTACTGCTCCTTTTACT ACTGCAGGTAATGGTGGGAAGGATCTGCCGGCCAATGGCTCATGTGTTGA TGATGACATGACGGATGCTGGCTCTCTAACTTCAGAGGAAAGCAGCGTGT TTGTGTCCTCCCCCCGGGAGTCCTCCTCTTCGCTCAGCACTGTTAGTACG GGCTTGGACCCAACAAGCAGCAACAGTGGAAATAAGCGGACCTTGCCCTT AGAATTTCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCTTTCTCTGG CCACAGCGTCCTCCGTATCTACAGACACTCTGCAGCAGCCGCTCAAGCGC GCCCGCAGCGTCATCCTACCCACCAGCAGCAGCAGCAGCAGCAGTTGTGC TACGCATGCACCTCCCTGCCTCGCCTCCTCCTCCACCTCCTCCTCTTCTT CTTTCTCTTCCCCTTTCTCTTCCTCTTCGGTGGCGACAGTGGCAGCAGCA GATGTCAGCAAGCCTCTCCTTCGTCAGGTTGAGTATCAGTGCGGTGCTTG CGCCGACACCTACACCGCTGCCTCCTCCCTCAATCCCTGGTGGGCCCTCG AGCGACAGGAGTGTCCCAAGTGCAAGAAGGTTCAAGTTCCACGCATTGAC ATAAACCTGCCTGCCAACACCATGGAATACCACCCGGCTTTGCTCGCGGA GGAAGGCGATGATGACGATGATGATGAGGTGGGAGGCGGGAGGGAGGGAG GGATGATGATGATGCCGGGGGGAGGGGATGGACATGGACATTTGGAGGAA AGAGAGGAGGGAGAGACGAGTGAGAAAGGGAGCGGTGGAAGTAGCGTACT AGAGGAGGACGAGGAAGCAGTGTTGAGCCCTATGCAAGCTTCACAGCTGT TGAGTTTGTTGGAGCATGCGCGGACATGCCCGGGCAATCATGCTGCCGAG AAACACCAGGCTGTGTGTACGAGTGCCAAGTATCTCATGTTGCATGTGAG GGATTGTGATGGCAGGACGTTAGATGGGGAGGCTTGTGGATTCTCGTGGT GCAGGCCTTGCAAACACTTGCTCGGGCACCTGGTCCGGTGTTACGAAGCC GAGAAGTGTCAGATCTGCTGTTTCTCACACCAAGAAGAGGAGGAGAAAGT GGAAAAGAAGGTGATGATGAGTGTGGAGGAGATGATTGAGGAGAAAGGAA TGAGGGTCGACACCTACAGGAGCTTGACGAGCTTGAGCTGA back to top
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