NO07G00910.1, NO07G00910.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G00910.1
Unique Name	NO07G00910.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2380
Alignment location	chr7:294879..297258 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:294879..297258 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO07G00910.1 vs.
Match: EWM27285.1 (hypothetical protein Naga_100080g8 [Nannochloropsis gaditana])

HSP 1 Score: 306.2 bits (783), Expect = 2.300e-79
Identity = 234/535 (43.74%), Postives = 307/535 (57.38%), Query Frame = 0

Query:   51 MARGRKKGKHSWDGYSKKDQASKWLRTLAEAHYQLRRSGSTSAAVTAAGTNKASNVISKNANGGWLQQFRLRHQR---GGINGSGSGAVVARVNSQAAARFVESYLRGPPSAAAANLTAPVAARSRKKDGVGCRREGDEDGGDISLEDWLSWEMRRGVKFDEAEEMGDTGKEGGKDQEASPIVSLTELCCRQVGADLPLYGAACALDKEVGEAQVRREHEAVAAGAPAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVEGEERGEEEEEGGSDDDSGESTTADAIQGIFSLLPSRCLARISLAASLSHAITDASLPLLCQPSALYLVLVGSFTDSGLARAMFPRLRQLSPTASWEDATQEPQLGGCAILQSLLVSSPGLTPLCVEGIGRHLTTVRHLAVPRCFNADVTMTAKEVLSTVGASCGYVQELDLRGCHWLTEKSLIGWVSVGGKAATATAGIVGLGGMDGLEKEEGEGMGVVVGGREGRREGRSRGMARMMEFDGPTPDRGPPVALRRLYLDKRLAKAEAVRSTFAEVG 583
            MA  RKKGK S DGYSKKDQA KWL+ LAEAHYQLRRSG+T+A    A T K S   + NANGGW Q+FRLRHQ     G   S SG+   R+N   AARF+ESYLR P +AA+A     V  R+ +++G   R+       D  L +W  W+     +  E+ E G    +   D++ + +V+LTELCCRQ+GADL LYGAA A   +   AQ+    +        ++ E           +   +   EE   E EGE  G     GG +  S E++ A +I+ +FSLLP  CLA ISLAASL+ A+TDA+LPLLCQPSAL L LVG +TD GL +A+ PRL       SWE A  EP+L GC  L+SL + SP LTP C+  +G  L+TV+ L + RCFNADVTMTAKEVL+ +GAS  Y++EL L GC WL+EK+++ W     K   A     G GG + +++E           + G+R GR   +  ++  +       PP ALRRL +D RLA    VR  +   G
Sbjct:    1 MAGSRKKGKQSRDGYSKKDQAHKWLQMLAEAHYQLRRSGNTTATTATAATRKES-AANCNANGGWAQRFRLRHQHHMHAGYRWSQSGSGGPRLNPLEAARFIESYLREPSTAASAAWVYKVTGRTGRREGAETRKATGGTRRDRGLCEW--WQ-----RVGESSESGSLCADRRVDEKPNGVVTLTELCCRQIGADLALYGAATAAGSDPMTAQMA---DLAIHSEDKQKTESSLVASTRTVSDGSADGRVEERGNEGEGEGEGRLTYRGGLEGIS-ETSVAASIRTMFSLLPPMCLAHISLAASLAQAVTDAALPLLCQPSALCLALVGDYTDEGLIKALSPRLGNAFAQFSWECARVEPRLEGCVALESLYLRSPCLTPSCLGEVGGRLSTVKSLTLSRCFNADVTMTAKEVLAHIGASWHYLEELSLEGCRWLSEKAVLKWAGGKEKVMNARGREGGEGGKEWVDEE-------AAVWQMGKRLGRD--IPSVLGLEASLSPCAPPAALRRLRVDVRLANRALVRQAWESRG 514

The following BLAST results are available for this feature:

BLAST of NO07G00910.1 vs.

BLAST of NO07G00910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27285.1	2.300e-79	43.74	hypothetical protein Naga_100080g8 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G00910	NO07G00910	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G00910.1	NO07G00910.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G00910.1.cds1	NO07G00910.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:294879..297258+
coding sequence from alignment at chr7:294879..297258+

mRNA sequence

>NO07G00910.1 ID=NO07G00910.1|Name=NO07G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2380bp
CGGTCGCGTCGAAGGAAAAAGTTCGAGCAGAAATTGAGAAACACCACCCC
ATACCACACGCCGCAGTGCTGAAGACCATCACAAGCACACTTTGTAGCTT
ACCGCGTCCCCACGGCTTTACTCGCACAGCGTTACAGCACGGCTGTCATA
AATCCCTTGGGCTACCCTGCATCGTGGGCGGCTGTGTGTTTCAATCTTCC
GCTGACCTGGCAGATCTCCCGCCACACACCCTGCATCGCTTCACACATGC
ATACCCTCACTGGTAGCCGTGCTGCGCTTAAATGATCAAGCGTGGCCAAT
TATGTCAGATGTGTTTGAGAGTCTATGATATGCCAATCATGGCCGTGCCC
TTTGCTTGACGGCTTTCTGCACATCAGATCGCCTCTTAGTCCATCCATCC
TTGTCGAGCTCTGAAAGGTTGCATTACGTAGATGCACACACATAGCCCCC
TTCCTGATACCCACTCCACAAGGCTCAATCTGTGCACACGACTCCTCCTC
GCTGCATTTGATGCTGGGCATATCTTTTGTATGCCGTTCTTATGCTACCG
CGTGACCCAATGCCCCTAAATCAACTCGTACTGATTTCCCTCGACCCCCC
GCCCCCACCCACACCACTTCTACAGCAGGGCTTCTCGCAACCTCTTCACA
TTTCCCTCCGCATCGCCTCTACACCATCCGTGCACAAAGTCATGGCACGC
GGCCGCAAAAAGGGCAAGCACTCCTGGGATGGCTACTCCAAGAAAGACCA
GGCCAGCAAATGGCTCAGAACCCTTGCCGAGGCACATTATCAATTACGTC
GCTCAGGCAGCACCAGCGCTGCAGTCACCGCAGCCGGCACCAACAAGGCC
AGTAATGTCATTAGCAAAAACGCGAATGGCGGGTGGTTGCAGCAGTTCCG
TCTGCGCCACCAACGAGGAGGAATCAACGGCAGCGGGTCCGGGGCAGTGG
TGGCACGGGTGAATTCTCAAGCTGCTGCACGCTTTGTTGAGTCTTACTTG
AGAGGTCCGCCCTCTGCGGCGGCAGCAAATTTGACGGCTCCGGTAGCAGC
ACGAAGTAGAAAGAAGGATGGTGTAGGGTGTAGGAGGGAGGGGGATGAGG
ATGGGGGGGATATTTCTCTGGAGGATTGGTTGTCCTGGGAAATGAGGAGA
GGTGTTAAATTTGATGAGGCGGAGGAAATGGGGGATACAGGAAAGGAAGG
GGGAAAGGACCAGGAGGCTTCGCCCATCGTGAGCCTTACCGAGCTATGTT
GCCGTCAGGTGGGTGCGGATCTGCCTCTCTACGGTGCTGCGTGTGCTTTG
GATAAGGAGGTGGGAGAGGCTCAAGTGAGGAGAGAACATGAAGCGGTAGC
AGCAGGAGCGCCGGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAG
GAAGTGGAGGGGGAAGAAAGGGGAGAAGAAGAAGAAGAGGGAGGAAGTGA
CGATGACAGCGGCGAGAGCACTACAGCTGACGCCATTCAAGGAATCTTCA
GCCTTCTCCCCTCCCGGTGCTTGGCGCGTATTTCCCTCGCAGCGTCTCTT
TCCCACGCCATCACGGATGCTTCCCTCCCCTTGCTCTGCCAACCCTCCGC
CCTCTACCTTGTCCTCGTCGGGAGTTTCACGGACTCTGGGCTTGCTCGAG
CCATGTTTCCGCGGCTTCGACAGCTTTCCCCCACTGCCTCTTGGGAGGAC
GCGACGCAGGAACCCCAACTCGGTGGATGTGCCATTCTTCAATCCCTCCT
TGTGAGCAGTCCTGGGTTGACCCCTCTGTGCGTGGAAGGGATCGGGAGGC
ATTTGACCACGGTGCGGCACTTGGCCGTTCCCCGGTGTTTTAATGCGGAC
GTCACCATGACAGCAAAGGAGGTGTTGTCGACCGTAGGAGCGTCCTGTGG
GTACGTGCAAGAACTTGACCTCCGGGGCTGCCACTGGCTCACGGAAAAGA
GTCTGATCGGCTGGGTGAGTGTTGGAGGGAAGGCGGCGACTGCGACTGCT
GGGATTGTGGGCTTGGGAGGAATGGATGGATTGGAGAAGGAAGAGGGCGA
GGGGATGGGGGTGGTGGTGGGTGGGAGGGAGGGAAGGAGGGAGGGAAGGA
GCAGGGGGATGGCAAGGATGATGGAGTTCGATGGACCGACGCCTGATAGA
GGCCCGCCTGTAGCTTTGCGTCGACTTTACCTGGATAAGCGGCTGGCCAA
AGCGGAGGCGGTGCGAAGTACGTTTGCGGAGGTGGGCGGTGATTGTGAGA
GTAGGAGTGGGGGCAAAGAGACCAAGGGCGTGGTTAAGGTGTGTGTTTGG
GAGGCGAAGGGGAAGAGGGCATTAGACTGA

protein sequence of NO07G00910.1

>NO07G00910.1-protein ID=NO07G00910.1-protein|Name=NO07G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=613bp
MLPRDPMPLNQLVLISLDPPPPPTPLLQQGFSQPLHISLRIASTPSVHKV
MARGRKKGKHSWDGYSKKDQASKWLRTLAEAHYQLRRSGSTSAAVTAAGT
NKASNVISKNANGGWLQQFRLRHQRGGINGSGSGAVVARVNSQAAARFVE
SYLRGPPSAAAANLTAPVAARSRKKDGVGCRREGDEDGGDISLEDWLSWE
MRRGVKFDEAEEMGDTGKEGGKDQEASPIVSLTELCCRQVGADLPLYGAA
CALDKEVGEAQVRREHEAVAAGAPAEEEEEEEEEEEEEEEEEEEEEEEEE
EEEEVEGEERGEEEEEGGSDDDSGESTTADAIQGIFSLLPSRCLARISLA
ASLSHAITDASLPLLCQPSALYLVLVGSFTDSGLARAMFPRLRQLSPTAS
WEDATQEPQLGGCAILQSLLVSSPGLTPLCVEGIGRHLTTVRHLAVPRCF
NADVTMTAKEVLSTVGASCGYVQELDLRGCHWLTEKSLIGWVSVGGKAAT
ATAGIVGLGGMDGLEKEEGEGMGVVVGGREGRREGRSRGMARMMEFDGPT
PDRGPPVALRRLYLDKRLAKAEAVRSTFAEVGGDCESRSGGKETKGVVKV
CVWEAKGKRALD*

mRNA from alignment at chr7:294879..297258+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G00910.1 ID=NO07G00910.1|Name=NO07G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2380bp|location=Sequence derived from alignment at chr7:294879..297258+ (Nannochloropsis oceanica)
CGGTCGCGTCGAAGGAAAAAGTTCGAGCAGAAATTGAGAAACACCACCCC
ATACCACACGCCGCAGTGCTGAAGACCATCACAAGCACACTTTGTAGCTT
ACCGCGTCCCCACGGCTTTACTCGCACAGCGTTACAGCACGGCTGTCATA
AATCCCTTGGGCTACCCTGCATCGTGGGCGGCTGTGTGTTTCAATCTTCC
GCTGACCTGGCAGATCTCCCGCCACACACCCTGCATCGCTTCACACATGC
ATACCCTCACTGGTAGCCGTGCTGCGCTTAAATGATCAAGCGTGGCCAAT
TATGTCAGATGTGTTTGAGAGTCTATGATATGCCAATCATGGCCGTGCCC
TTTGCTTGACGGCTTTCTGCACATCAGATCGCCTCTTAGTCCATCCATCC
TTGTCGAGCTCTGAAAGGTTGCATTACGTAGATGCACACACATAGCCCCC
TTCCTGATACCCACTCCACAAGGCTCAATCTGTGCACACGACTCCTCCTC
GCTGCATTTGATGCTGGGCATATCTTTTGTATGCCGTTCTTATGCTACCG
CGTGACCCAATGCCCCTAAATCAACTCGTACTGATTTCCCTCGACCCCCC
GCCCCCACCCACACCACTTCTACAGCAGGGCTTCTCGCAACCTCTTCACA
TTTCCCTCCGCATCGCCTCTACACCATCCGTGCACAAAGTCATGGCACGC
GGCCGCAAAAAGGGCAAGCACTCCTGGGATGGCTACTCCAAGAAAGACCA
GGCCAGCAAATGGCTCAGAACCCTTGCCGAGGCACATTATCAATTACGTC
GCTCAGGCAGCACCAGCGCTGCAGTCACCGCAGCCGGCACCAACAAGGCC
AGTAATGTCATTAGCAAAAACGCGAATGGCGGGTGGTTGCAGCAGTTCCG
TCTGCGCCACCAACGAGGAGGAATCAACGGCAGCGGGTCCGGGGCAGTGG
TGGCACGGGTGAATTCTCAAGCTGCTGCACGCTTTGTTGAGTCTTACTTG
AGAGGTCCGCCCTCTGCGGCGGCAGCAAATTTGACGGCTCCGGTAGCAGC
ACGAAGTAGAAAGAAGGATGGTGTAGGGTGTAGGAGGGAGGGGGATGAGG
ATGGGGGGGATATTTCTCTGGAGGATTGGTTGTCCTGGGAAATGAGGAGA
GGTGTTAAATTTGATGAGGCGGAGGAAATGGGGGATACAGGAAAGGAAGG
GGGAAAGGACCAGGAGGCTTCGCCCATCGTGAGCCTTACCGAGCTATGTT
GCCGTCAGGTGGGTGCGGATCTGCCTCTCTACGGTGCTGCGTGTGCTTTG
GATAAGGAGGTGGGAGAGGCTCAAGTGAGGAGAGAACATGAAGCGGTAGC
AGCAGGAGCGCCGGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAG
GAAGTGGAGGGGGAAGAAAGGGGAGAAGAAGAAGAAGAGGGAGGAAGTGA
CGATGACAGCGGCGAGAGCACTACAGCTGACGCCATTCAAGGAATCTTCA
GCCTTCTCCCCTCCCGGTGCTTGGCGCGTATTTCCCTCGCAGCGTCTCTT
TCCCACGCCATCACGGATGCTTCCCTCCCCTTGCTCTGCCAACCCTCCGC
CCTCTACCTTGTCCTCGTCGGGAGTTTCACGGACTCTGGGCTTGCTCGAG
CCATGTTTCCGCGGCTTCGACAGCTTTCCCCCACTGCCTCTTGGGAGGAC
GCGACGCAGGAACCCCAACTCGGTGGATGTGCCATTCTTCAATCCCTCCT
TGTGAGCAGTCCTGGGTTGACCCCTCTGTGCGTGGAAGGGATCGGGAGGC
ATTTGACCACGGTGCGGCACTTGGCCGTTCCCCGGTGTTTTAATGCGGAC
GTCACCATGACAGCAAAGGAGGTGTTGTCGACCGTAGGAGCGTCCTGTGG
GTACGTGCAAGAACTTGACCTCCGGGGCTGCCACTGGCTCACGGAAAAGA
GTCTGATCGGCTGGGTGAGTGTTGGAGGGAAGGCGGCGACTGCGACTGCT
GGGATTGTGGGCTTGGGAGGAATGGATGGATTGGAGAAGGAAGAGGGCGA
GGGGATGGGGGTGGTGGTGGGTGGGAGGGAGGGAAGGAGGGAGGGAAGGA
GCAGGGGGATGGCAAGGATGATGGAGTTCGATGGACCGACGCCTGATAGA
GGCCCGCCTGTAGCTTTGCGTCGACTTTACCTGGATAAGCGGCTGGCCAA
AGCGGAGGCGGTGCGAAGTACGTTTGCGGAGGTGGGCGGTGATTGTGAGA
GTAGGAGTGGGGGCAAAGAGACCAAGGGCGTGGTTAAGGTGTGTGTTTGG
GAGGCGAAGGGGAAGAGGGCATTAGACTGA

Coding sequence (CDS) from alignment at chr7:294879..297258+

>NO07G00910.1 ID=NO07G00910.1|Name=NO07G00910.1|organism=Nannochloropsis oceanica|type=CDS|length=1839bp|location=Sequence derived from alignment at chr7:294879..297258+ (Nannochloropsis oceanica)
ATGCTACCGCGTGACCCAATGCCCCTAAATCAACTCGTACTGATTTCCCT
CGACCCCCCGCCCCCACCCACACCACTTCTACAGCAGGGCTTCTCGCAAC
CTCTTCACATTTCCCTCCGCATCGCCTCTACACCATCCGTGCACAAAGTC
ATGGCACGCGGCCGCAAAAAGGGCAAGCACTCCTGGGATGGCTACTCCAA
GAAAGACCAGGCCAGCAAATGGCTCAGAACCCTTGCCGAGGCACATTATC
AATTACGTCGCTCAGGCAGCACCAGCGCTGCAGTCACCGCAGCCGGCACC
AACAAGGCCAGTAATGTCATTAGCAAAAACGCGAATGGCGGGTGGTTGCA
GCAGTTCCGTCTGCGCCACCAACGAGGAGGAATCAACGGCAGCGGGTCCG
GGGCAGTGGTGGCACGGGTGAATTCTCAAGCTGCTGCACGCTTTGTTGAG
TCTTACTTGAGAGGTCCGCCCTCTGCGGCGGCAGCAAATTTGACGGCTCC
GGTAGCAGCACGAAGTAGAAAGAAGGATGGTGTAGGGTGTAGGAGGGAGG
GGGATGAGGATGGGGGGGATATTTCTCTGGAGGATTGGTTGTCCTGGGAA
ATGAGGAGAGGTGTTAAATTTGATGAGGCGGAGGAAATGGGGGATACAGG
AAAGGAAGGGGGAAAGGACCAGGAGGCTTCGCCCATCGTGAGCCTTACCG
AGCTATGTTGCCGTCAGGTGGGTGCGGATCTGCCTCTCTACGGTGCTGCG
TGTGCTTTGGATAAGGAGGTGGGAGAGGCTCAAGTGAGGAGAGAACATGA
AGCGGTAGCAGCAGGAGCGCCGGCAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAG
GAGGAGGAGGAAGTGGAGGGGGAAGAAAGGGGAGAAGAAGAAGAAGAGGG
AGGAAGTGACGATGACAGCGGCGAGAGCACTACAGCTGACGCCATTCAAG
GAATCTTCAGCCTTCTCCCCTCCCGGTGCTTGGCGCGTATTTCCCTCGCA
GCGTCTCTTTCCCACGCCATCACGGATGCTTCCCTCCCCTTGCTCTGCCA
ACCCTCCGCCCTCTACCTTGTCCTCGTCGGGAGTTTCACGGACTCTGGGC
TTGCTCGAGCCATGTTTCCGCGGCTTCGACAGCTTTCCCCCACTGCCTCT
TGGGAGGACGCGACGCAGGAACCCCAACTCGGTGGATGTGCCATTCTTCA
ATCCCTCCTTGTGAGCAGTCCTGGGTTGACCCCTCTGTGCGTGGAAGGGA
TCGGGAGGCATTTGACCACGGTGCGGCACTTGGCCGTTCCCCGGTGTTTT
AATGCGGACGTCACCATGACAGCAAAGGAGGTGTTGTCGACCGTAGGAGC
GTCCTGTGGGTACGTGCAAGAACTTGACCTCCGGGGCTGCCACTGGCTCA
CGGAAAAGAGTCTGATCGGCTGGGTGAGTGTTGGAGGGAAGGCGGCGACT
GCGACTGCTGGGATTGTGGGCTTGGGAGGAATGGATGGATTGGAGAAGGA
AGAGGGCGAGGGGATGGGGGTGGTGGTGGGTGGGAGGGAGGGAAGGAGGG
AGGGAAGGAGCAGGGGGATGGCAAGGATGATGGAGTTCGATGGACCGACG
CCTGATAGAGGCCCGCCTGTAGCTTTGCGTCGACTTTACCTGGATAAGCG
GCTGGCCAAAGCGGAGGCGGTGCGAAGTACGTTTGCGGAGGTGGGCGGTG
ATTGTGAGAGTAGGAGTGGGGGCAAAGAGACCAAGGGCGTGGTTAAGGTG
TGTGTTTGGGAGGCGAAGGGGAAGAGGGCATTAGACTGA

Synonyms

Publications