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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr7 | genome | chr7:242709..244914 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00670.3 vs.
Match: EWM27326.1 (cullin-associated nedd8-dissociated protein 1 [Nannochloropsis gaditana]) HSP 1 Score: 378.6 bits (971), Expect = 1.900e-101 Identity = 221/353 (62.61%), Postives = 259/353 (73.37%), Query Frame = 0
Query: 1 MGKVVANRLSSRLLGGVHQEETLEIKLESLDNLTDILKRFGRDMEAAHGSMITIGLQQLHHPKTPVRKRANAFLAALAVVISDPLLNQLMDELLREIAAAETKGPREVQTLIQTVGAVSRTVGHRLGKHLPTIVPLFLRFLGDPTPK------EDEDEDDEKNELRETIFAAFESVVLRCPREVTSHLPLIVSVALGFMKWDPNYTY-EEEEGGVEEGMEMDEEKEVEEEEEEEEEEEEDYGGSDDDDTSWKVRRAALKVLGAIILSRPEMLKILYEQCADELIGRFKEREENVRLDVIGCFACLLKATLALEG-----------------NTGGGKGGKGRV---GGGGGGG 327
MGK VA+ L +RLL GV QE+ L++K+E LD LTD+L+RFGR+++ + +M++ GL L K VRKRANAF+ ALA V+ D +L+ +M+ELL+EI AE +GPREVQ LIQTVG V+RTVGHR+GKHL +VPL LRFLG K E+E++DDEKNELRETIFAA ESVVLRCPREVT HLPLI++ AL FMKWDPNYTY EEEE G EG EE EE EE+EEDY GSDDDD+SWKVRRAALKVLG II+SRPE+L+ LY QCADELIGRFKEREENVRLDVIGCF+CLLKATLALEG + GGG V G GGGGG
Sbjct: 118 MGKAVASHLGARLLSGVQQEQALDVKIECLDTLTDLLRRFGRELDGQYPAMMSTGLTHLQQGKVMVRKRANAFVGALAAVVPDAMLDAMMEELLKEIQGAEGRGPREVQNLIQTVGTVARTVGHRVGKHLSLVVPLLLRFLGGSGEKVGEEEEEEEEQDDEKNELRETIFAALESVVLRCPREVTVHLPLIIAAALKFMKWDPNYTYAEEEEAGEGEGEGGAEE---GGEEGGYEEDEEDYAGSDDDDSSWKVRRAALKVLGVIIMSRPELLESLYAQCADELIGRFKEREENVRLDVIGCFSCLLKATLALEGRDRKRKAQVTWGLARQESEGGGSEDAMLVVEEGDGGGGG 467
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00670.3 ID=NO07G00670.3|Name=NO07G00670.3|organism=Nannochloropsis oceanica|type=mRNA|length=1968bp
AAGGAGTCTGATGGGGAAAACCCTTATAACGCAACCACCAACCCGCCCGT
CAACTCATGGTATTACGGTATTCCGCTTCATCTGCTGCTTGGGTGGACAC
AATGGAGCGGGCGGGGGGACGCCGGCGGTGCCAATTACCCCAAACCTTTC
TGGATACTCGCTCCTCGTCCTTCTTTGCCTCTAACGCATCGGCCAGCCCA
CCACTCACATCGCAAACTCACGCTGACTAAACACACATCACACCCTCATA
ACCTTATAGAGAGCCATAATCATGAGCCTCGCTTCGCTCAACGTCTTGTT
GGAGAAGGCCACGGATCCAGACAAGGATGCCCGTTTCATGGCCACCAACG
ATTTATGTACAGAGCTGTCCAAGGACATCAAGCTCGATGCGAACATGGTG
AGATTTTGCTTTCGAATTGGTGTGTGTTCATGCCCGCCTATCCCCCTCTT
TGGTAATAGGTCATCTTCGTATGCCACGTATTTCTGTCTTGAAATATGAG
GTGGCCAGGCTCAACTGTCCCTCTTCTGCTTTGGACTCCGTCCCGGTTGT
CTCCTTCCTAGGAGGTTGATTGGTTGTTGATAATAAGGCTCCTGCGTCCG
TAATCTGCCCTCCCCCATCTTCGTCTCTCTTCCCACACAGGAACGGCGCA
TCTGTCAAGCGGTTCTCAAGCAGCTCGACGACGCCTCCAATGACGTGCAG
TCGATTGCCGTCAAGTGCCTTGGCATCCTCTTTAAAAGGGGTAAATATTT
CTCCTTCCTCTCTCCCTTCTCCCCTCTCTCCTCTCTTTTTTAAGTAACGA
GCCGTGAAGGTGTTGAACTCTCACTCTCTCCCTTCCTCCCCTTCCTTTCC
TCTCTCCCCCAGTACACGAGGCGCAGGTGACGGAGATCTCCGACAAACTC
TGTACCCTCATATTGGAGGGCAAGCCGGAGTTGCGTGACATTTATTCGAT
CGGGCTCAAGACTCTGATTTCGGATATCCCGGACAGTATGGGCAAGGTCG
TTGCTAATCGCCTTAGCTCCCGTCTGCTCGGTGGTGTCCATCAGGAAGAA
ACCTTGGAGATTAAGCTTGAAAGCCTCGACAACCTCACCGACATCCTCAA
GCGCTTCGGCCGCGACATGGAAGCGGCTCACGGGTCCATGATCACCATCG
GCCTCCAACAGCTCCACCATCCCAAAACTCCCGTGAGGAAACGCGCAAAT
GCATTCCTCGCCGCCCTGGCCGTGGTGATATCAGACCCCTTACTGAACCA
ATTGATGGACGAACTCCTTCGCGAGATTGCCGCAGCCGAGACCAAGGGCC
CGCGAGAAGTGCAAACACTCATTCAGACGGTTGGTGCTGTTTCTCGTACC
GTCGGGCATCGTCTGGGCAAGCATCTCCCTACTATTGTCCCGCTCTTCCT
CCGGTTTTTGGGAGACCCTACCCCGAAGGAAGATGAGGACGAGGATGACG
AAAAGAATGAGTTGAGAGAGACGATTTTTGCGGCGTTTGAAAGCGTGGTG
CTCAGGTGTCCCCGAGAGGTGACGTCACATTTGCCTTTGATTGTGTCGGT
GGCCCTGGGGTTCATGAAGTGGGACCCGAACTATACGTATGAGGAGGAGG
AGGGTGGGGTGGAGGAAGGGATGGAGATGGATGAGGAAAAGGAGGTGGAG
GAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGACTATGGAGGGTCAGA
CGATGACGACACGAGTTGGAAGGTGAGGAGGGCGGCGTTGAAGGTGTTGG
GGGCAATAATACTCTCGAGGCCGGAGATGCTCAAAATATTGTATGAGCAG
TGTGCGGATGAATTGATTGGGCGGTTTAAAGAGAGGGAGGAGAATGTGCG
GTTGGATGTGATCGGGTGTTTCGCGTGCCTGTTGAAGGCGACTTTAGCTT
TGGAGGGTAATACGGGTGGGGGGAAGGGAGGGAAAGGGCGAGTGGGAGGA
GGGGGGGGGGGGGGTTGA back to topprotein sequence of NO07G00670.3 >NO07G00670.3-protein ID=NO07G00670.3-protein|Name=NO07G00670.3|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MGKVVANRLSSRLLGGVHQEETLEIKLESLDNLTDILKRFGRDMEAAHGS
MITIGLQQLHHPKTPVRKRANAFLAALAVVISDPLLNQLMDELLREIAAA
ETKGPREVQTLIQTVGAVSRTVGHRLGKHLPTIVPLFLRFLGDPTPKEDE
DEDDEKNELRETIFAAFESVVLRCPREVTSHLPLIVSVALGFMKWDPNYT
YEEEEGGVEEGMEMDEEKEVEEEEEEEEEEEEDYGGSDDDDTSWKVRRAA
LKVLGAIILSRPEMLKILYEQCADELIGRFKEREENVRLDVIGCFACLLK
ATLALEGNTGGGKGGKGRVGGGGGGG* back to topmRNA from alignment at chr7:242709..244914- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00670.3 ID=NO07G00670.3|Name=NO07G00670.3|organism=Nannochloropsis oceanica|type=mRNA|length=2206bp|location=Sequence derived from alignment at chr7:242709..244914- (Nannochloropsis oceanica)
AAGGAGTCTGATGGGGAAAACCCTTATAACGCAACCACCAACCCGCCCGT
CAACTCATGGTATTACGGTATTCCGCTTCATCTGCTGCTTGGGTGGACAC
AATGGAGCGGGCGGGGGGACGCCGGCGGTGCCAATTACCCCAAACCTTTC
TGGATACTCGCTCCTCGTCCTTCTTTGCCTCTAACGCATCGGCCAGCCCA
CCACTCACATCGCAAACTCACGCTGACTAAACACACATCACACCCTCATA
ACCTTATAGAGAGCCATAATCATGAGCCTCGCTTCGCTCAACGTCTTGTT
GGAGAAGGCCACGGATCCAGACAAGGTAAGGCAAGAGAGAGACGTCACCA
GCACCCCCTCGCCTCACCATGTTCCCACCGGCCCGCCTCATTCCCCCCCT
CCCACAAACACAACACCCCAGGATGCCCGTTTCATGGCCACCAACGATTT
ATGTACAGAGCTGTCCAAGGACATCAAGCTCGATGCGAACATGGTGAGAT
TTTGCTTTCGAATTGGTGTGTGTTCATGCCCGCCTATCCCCCTCTTTGGT
AATAGGTCATCTTCGTATGCCACGTATTTCTGTCTTGAAATATGAGGTGG
CCAGGCTCAACTGTCCCTCTTCTGCTTTGGACTCCGTCCCGGTTGTCTCC
TTCCTAGGAGGTTGATTGGTTGTTGATAATAAGGCTCCTGCGTCCGTAAT
CTGCCCTCCCCCATCTTCGTCTCTCTTCCCACACAGGAACGGCGCATCTG
TCAAGCGGTTCTCAAGCAGCTCGACGACGCCTCCAATGACGTGCAGTCGA
TTGCCGTCAAGTGCCTTGGCATCCTCTTTAAAAGGGGTAAATATTTCTCC
TTCCTCTCTCCCTTCTCCCCTCTCTCCTCTCTTTTTTAAGTAACGAGCCG
TGAAGGTGTTGAACTCTCACTCTCTCCCTTCCTCCCCTTCCTTTCCTCTC
TCCCCCAGTACACGAGGCGCAGGTGACGGAGATCTCCGACAAACTCTGTA
CCCTCATATTGGAGGGCAAGCCGGAGTTGCGTGACATTTATTCGATCGGG
CTCAAGACTCTGATTTCGGATATCCCGGACAGTATGGGCAAGGTATTCAT
GATGTGTATTTCCCCACATTTCCTTCTCTCCCATCCTGCCTCCTTTCCTT
CGGGTCAGTTCTTTTGTCATTCATCCCATCCTTCCCTTTCTTTCCTCCGT
CCTTCCTCCCTCCCTCCTTCCCTCCCTTCCTCAGGTCGTTGCTAATCGCC
TTAGCTCCCGTCTGCTCGGTGGTGTCCATCAGGAAGAAACCTTGGAGATT
AAGCTTGAAAGCCTCGACAACCTCACCGACATCCTCAAGCGCTTCGGCCG
CGACATGGAAGCGGCTCACGGGTCCATGATCACCATCGGCCTCCAACAGC
TCCACCATCCCAAAACTCCCGTGAGGAAACGCGCAAATGCATTCCTCGCC
GCCCTGGCCGTGGTGATATCAGACCCCTTACTGAACCAATTGATGGACGA
ACTCCTTCGCGAGATTGCCGCAGCCGAGACCAAGGGCCCGCGAGAAGTGC
AAACACTCATTCAGACGGTTGGTGCTGTTTCTCGTACCGTCGGGCATCGT
CTGGGCAAGCATCTCCCTACTATTGTCCCGCTCTTCCTCCGGTTTTTGGG
AGACCCTACCCCGAAGGAAGATGAGGACGAGGATGACGAAAAGAATGAGT
TGAGAGAGACGATTTTTGCGGCGTTTGAAAGCGTGGTGCTCAGGTGTCCC
CGAGAGGTGACGTCACATTTGCCTTTGATTGTGTCGGTGGCCCTGGGGTT
CATGAAGTGGGACCCGAACTATACGTATGAGGAGGAGGAGGGTGGGGTGG
AGGAAGGGATGGAGATGGATGAGGAAAAGGAGGTGGAGGAGGAGGAGGAA
GAGGAGGAGGAGGAGGAGGAGGACTATGGAGGGTCAGACGATGACGACAC
GAGTTGGAAGGTGAGGAGGGCGGCGTTGAAGGTGTTGGGGGCAATAATAC
TCTCGAGGCCGGAGATGCTCAAAATATTGTATGAGCAGTGTGCGGATGAA
TTGATTGGGCGGTTTAAAGAGAGGGAGGAGAATGTGCGGTTGGATGTGAT
CGGGTGTTTCGCGTGCCTGTTGAAGGCGACTTTAGCTTTGGAGGGTAATA
CGGGTGGGGGGAAGGGAGGGAAAGGGCGAGTGGGAGGAGGGGGGGGGGGG
GGTTGA back to topCoding sequence (CDS) from alignment at chr7:242709..244914- >NO07G00670.3 ID=NO07G00670.3|Name=NO07G00670.3|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr7:242709..244914- (Nannochloropsis oceanica)
ATGGGCAAGGTCGTTGCTAATCGCCTTAGCTCCCGTCTGCTCGGTGGTGT
CCATCAGGAAGAAACCTTGGAGATTAAGCTTGAAAGCCTCGACAACCTCA
CCGACATCCTCAAGCGCTTCGGCCGCGACATGGAAGCGGCTCACGGGTCC
ATGATCACCATCGGCCTCCAACAGCTCCACCATCCCAAAACTCCCGTGAG
GAAACGCGCAAATGCATTCCTCGCCGCCCTGGCCGTGGTGATATCAGACC
CCTTACTGAACCAATTGATGGACGAACTCCTTCGCGAGATTGCCGCAGCC
GAGACCAAGGGCCCGCGAGAAGTGCAAACACTCATTCAGACGGTTGGTGC
TGTTTCTCGTACCGTCGGGCATCGTCTGGGCAAGCATCTCCCTACTATTG
TCCCGCTCTTCCTCCGGTTTTTGGGAGACCCTACCCCGAAGGAAGATGAG
GACGAGGATGACGAAAAGAATGAGTTGAGAGAGACGATTTTTGCGGCGTT
TGAAAGCGTGGTGCTCAGGTGTCCCCGAGAGGTGACGTCACATTTGCCTT
TGATTGTGTCGGTGGCCCTGGGGTTCATGAAGTGGGACCCGAACTATACG
TATGAGGAGGAGGAGGGTGGGGTGGAGGAAGGGATGGAGATGGATGAGGA
AAAGGAGGTGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGACT
ATGGAGGGTCAGACGATGACGACACGAGTTGGAAGGTGAGGAGGGCGGCG
TTGAAGGTGTTGGGGGCAATAATACTCTCGAGGCCGGAGATGCTCAAAAT
ATTGTATGAGCAGTGTGCGGATGAATTGATTGGGCGGTTTAAAGAGAGGG
AGGAGAATGTGCGGTTGGATGTGATCGGGTGTTTCGCGTGCCTGTTGAAG
GCGACTTTAGCTTTGGAGGGTAATACGGGTGGGGGGAAGGGAGGGAAAGG
GCGAGTGGGAGGAGGGGGGGGGGGGGGTTGA back to top
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