NO06G01640.1, NO06G01640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01640.1
Unique NameNO06G01640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length588
Alignment locationchr6:512217..513528 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:512217..513528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01640.1 vs.
Match: EWM26180.1 (60s ribosomal protein l9 [Nannochloropsis gaditana])

HSP 1 Score: 361.3 bits (926), Expect = 1.900e-96
Identity = 179/192 (93.23%), Postives = 184/192 (95.83%), Query Frame = 0 
Query:    1 MKLILATKYVNIPEGVTMTIKSRHVTVKGPRGELSRGFKHLNLAFELVGGNKDKGTNPKKLKVDLWFGNRKQLATIRTVCSHFENLITGVTKGFLYKMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRTSDVKDQIELKGNDLTTVSLTAARIQQCTTVKRKDIRKFLDGIYVSHKGHIV 193
            MKLILATK VNIPEGVT+ IKSRHVTVKGPRGELSR FKHLN+AFELVGGNKDKGTNPKKLKVDLWF NRKQLATIRTVCSH ENL+TGVTKGFLY+MRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVR+SDVKDQIELKGNDLT VSLTAARIQQCTTVKRKDIRKFLDGIYVS K HIV
Sbjct:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIV 192
The following BLAST results are available for this feature:
BLAST of NO06G01640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26180.11.900e-9693.2360s ribosomal protein l9 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01640NO06G01640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01640.1NO06G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01640.1.cds1NO06G01640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01640.1.cds2NO06G01640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01640.1.cds3NO06G01640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01640.1 ID=NO06G01640.1|Name=NO06G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=588bp
ATGAAGCTTATTCTTGCCACCAAATACGTCAACATCCCTGAGGGAGTGAC
GATGACCATTAAGTCCCGCCACGTGACGGTCAAGGGTCCCCGTGGCGAGC
TGTCGCGAGGGTTTAAGCACTTAAACCTGGCCTTCGAGTTGGTGGGCGGA
AACAAGGACAAGGGCACGAATCCCAAGAAGCTGAAGGTGGACCTCTGGTT
CGGTAACCGCAAGCAGCTGGCGACCATTCGTACCGTGTGCTCCCACTTTG
AGAACCTCATCACGGGCGTGACCAAGGGGTTCTTGTACAAGATGCGGTTT
GTGTACGCCCATTTCCCTATCAATGTATCGCTGACGGACAAGACTGTGGA
GGTCCGAAATTTCTTGGGGGAGAAGCGGGTGCGACGCGTGGAGCTGCTGC
CCGGAGTAGAGTACGTCCGCACATCTGATGTCAAGGACCAGATCGAGTTG
AAGGGAAATGACCTGACCACCGTTTCGCTGACGGCCGCTAGGATCCAACA
GTGCACCACTGTAAAGCGCAAGGATATCCGTAAATTTTTGGACGGTATCT
ACGTCTCTCACAAGGGTCACATTGTCGAATCCGATTAA
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protein sequence of NO06G01640.1

>NO06G01640.1-protein ID=NO06G01640.1-protein|Name=NO06G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MKLILATKYVNIPEGVTMTIKSRHVTVKGPRGELSRGFKHLNLAFELVGG
NKDKGTNPKKLKVDLWFGNRKQLATIRTVCSHFENLITGVTKGFLYKMRF
VYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRTSDVKDQIEL
KGNDLTTVSLTAARIQQCTTVKRKDIRKFLDGIYVSHKGHIVESD*
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mRNA from alignment at chr6:512217..513528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01640.1 ID=NO06G01640.1|Name=NO06G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1312bp|location=Sequence derived from alignment at chr6:512217..513528+ (Nannochloropsis oceanica)
ATGAAGCTTATTCTTGCCACCAAATACGTCAACATCCCTGAGGGAGGTAC
GTACAAATAGCGAACGCGTAGGAAGGGAGGCAGGCAGGGTCAGAGTGAGG
TGTGTGGGTGGGATTACGAGTAGAAACGCGAAGGAAGAAGAGGAGTCTGC
TTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTTGAGGGCAG
ACGAATAATTTCGCGTTGAGGAATTGATATCTGGTGATTGGGCGTATGGT
CTCTTTCATCTTTAAGCTTATATGGCTCGCCCAGCCTGCGTAGTGGGGCA
TGAGCTGCATGGTGCTGGGATGCCAGGGCTGTTGGCGTGAGCGAGCTTTC
ATGCCTGTATCGCTCTTGCTATTCGTATCTCTTTCCACCAGGGCACGGAT
GATTGTCAAACATGTCAAGAGAGTATATATCTATTCTTTGCATGTCTGTT
TAGATGCATGCGTGCTGCTCTGTGTCCATTGTTTGTCGGTCTTAGTTGTC
CTGTCATTAACCCTTCACTCACTCCCCCTTCCTTCCCTTTCTCCTTTCCT
CAGTGACGATGACCATTAAGTCCCGCCACGTGACGGTCAAGGGTCCCCGT
GGCGAGCTGTCGCGAGGGTTTAAGCACTTAAACCTGGCCTTCGAGTTGGT
GGGCGGAAACAAGGACAAGGGCACGAATCCCAAGAAGCTGAAGGTGGACC
TCTGGTTCGGTAACCGCAAGCAGCTGGCGACCATTCGTACCGTGTGCTCC
CACTTTGAGAACCTCATCACGGGCGTGACCAAGGGGTTCTTGTACAAGAT
GCGGTTTGTGTACGCCCATTTCCCTATCAATGTATCGCTGACGGACAAGA
CTGTGGAGGTCCGAAATTTCTTGGGGGAGAAGCGGGTGCGACGCGTGGAG
CTGCTGCCCGGAGTAGAGTACGTCCGCACATCTGATGTCAAGGACCAGAT
CGAGTTGAAGGGAAATGACCTGACCACCGTTTCGCTGACGGCCGCTAGGA
TCCAACAGTGCACCACTGTAAAGCGCAAGTACGTGTTTTGGGAGGGGAAA
GAGGGAGGGAAGAAGGTGTCGGGTTCCTGCGGTTCCTGCGGCTTTTGCTT
GCGTTTGGAAGTTTGTCTTTTGAAGGAATACCATTGGTGAAGGAAGGCTG
GAAGTTCGGAAGATCCCGTTGGGAGCTATATACATGAAACAACCCCTCAC
CCGCCCTCCTCCACCGCTTCCTCCTTCTCTCCCTCCCTCCCACAGGGATA
TCCGTAAATTTTTGGACGGTATCTACGTCTCTCACAAGGGTCACATTGTC
GAATCCGATTAA
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Coding sequence (CDS) from alignment at chr6:512217..513528+

>NO06G01640.1 ID=NO06G01640.1|Name=NO06G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at chr6:512217..513528+ (Nannochloropsis oceanica)
ATGAAGCTTATTCTTGCCACCAAATACGTCAACATCCCTGAGGGAGTGAC
GATGACCATTAAGTCCCGCCACGTGACGGTCAAGGGTCCCCGTGGCGAGC
TGTCGCGAGGGTTTAAGCACTTAAACCTGGCCTTCGAGTTGGTGGGCGGA
AACAAGGACAAGGGCACGAATCCCAAGAAGCTGAAGGTGGACCTCTGGTT
CGGTAACCGCAAGCAGCTGGCGACCATTCGTACCGTGTGCTCCCACTTTG
AGAACCTCATCACGGGCGTGACCAAGGGGTTCTTGTACAAGATGCGGTTT
GTGTACGCCCATTTCCCTATCAATGTATCGCTGACGGACAAGACTGTGGA
GGTCCGAAATTTCTTGGGGGAGAAGCGGGTGCGACGCGTGGAGCTGCTGC
CCGGAGTAGAGTACGTCCGCACATCTGATGTCAAGGACCAGATCGAGTTG
AAGGGAAATGACCTGACCACCGTTTCGCTGACGGCCGCTAGGATCCAACA
GTGCACCACTGTAAAGCGCAAGGATATCCGTAAATTTTTGGACGGTATCT
ACGTCTCTCACAAGGGTCACATTGTCGAATCCGATTAA
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Synonyms
Publications