NO06G01310.1, NO06G01310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01310.1
Unique NameNO06G01310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length778
Alignment locationchr6:425625..426402 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:425625..426402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01310.1 vs.
Match: EWM22418.1 (adenosine trna methylthiotransferase [Nannochloropsis gaditana])

HSP 1 Score: 214.5 bits (545), Expect = 2.000e-52
Identity = 107/124 (86.29%), Postives = 116/124 (93.55%), Query Frame = 0 
Query:    1 MFDLSYTSKPQGRVQGRGLMPTPLKQLMAKEGADADAALTYAVESMGCAMNTADSERMAGQLMALGFKEASTPQEVTKADVVVVNTCSIRDHAEQKVYSYLGPYINRKKRGDNLAIVVAGCVAQ 125
            MFDLSYTSKPQGRVQGRGL+PTPLK+LMAK+    DAAL YAVE+MGCAMNTADSERMAGQL ALGF+EA++ +EV KADVVVVNTCSIRDHAEQKVYSYLGPY+NRKKRGDNLAIVVAGCVAQ
Sbjct:  209 MFDLSYTSKPQGRVQGRGLLPTPLKELMAKD--KDDAALVYAVETMGCAMNTADSERMAGQLSALGFREAASSEEVAKADVVVVNTCSIRDHAEQKVYSYLGPYVNRKKRGDNLAIVVAGCVAQ 330
The following BLAST results are available for this feature:
BLAST of NO06G01310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22418.12.000e-5286.29adenosine trna methylthiotransferase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01310NO06G01310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01310.1NO06G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01310.1.cds1NO06G01310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01310.1 ID=NO06G01310.1|Name=NO06G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=778bp
TAATAGAGGATGTCATGTTCGACCTTAGCTACACCTCCAAGCCTCAGGGT
CGAGTGCAGGGCCGGGGTTTGATGCCGACGCCTCTCAAACAGCTCATGGC
TAAGGAGGGGGCCGATGCGGACGCCGCGCTGACGTACGCAGTAGAATCAA
TGGGCTGTGCGATGAACACGGCAGACTCGGAGCGTATGGCAGGACAATTG
ATGGCGCTGGGCTTCAAGGAGGCCTCCACGCCACAGGAGGTCACAAAGGC
CGATGTGGTGGTTGTTAATACTTGTTCCATCCGTGATCACGCCGAGCAAA
AAGTCTACAGCTATCTTGGCCCGTACATCAACCGGAAGAAGCGCGGCGAC
AACCTGGCCATTGTCGTGGCAGGCTGTGTGGCGCAGCATCCTTGTCCACG
CACACAAGCCCTTATTCAGATTCACAATTCCTGAGCATCCTCACCAAAGG
ACCCATCGTGTCTTCTCTACATCACTCACTCTGTTAGGGTTAGCACGCTT
TTTGTCTTGATCTCTATTTGCCGCCGAGTCCCATCCTTTGAGCTCTACTT
CCCCTTGCATTCCTTTCCTTCTTCCCTCCTTCCCTCCCTTCCCTCAAGCC
CAGCGCAGGCAAGGCGGCAGGAATTGCAACCCCAAGTAGTCCCACACCTC
CTCCTTCCCCTTTTCAACCTACAGAGGCACAAACAGGTAAACCTCTCCTA
TGTGCGTCAGGGAAGAGTTCGGAAACGCTCGTAAAGCCTCCCAGCAATTC
CTCCTCCCTCTCTCCCCTTCCTCCCCCC
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protein sequence of NO06G01310.1

>NO06G01310.1-protein ID=NO06G01310.1-protein|Name=NO06G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MFDLSYTSKPQGRVQGRGLMPTPLKQLMAKEGADADAALTYAVESMGCAM
NTADSERMAGQLMALGFKEASTPQEVTKADVVVVNTCSIRDHAEQKVYSY
LGPYINRKKRGDNLAIVVAGCVAQHPCPRTQALIQIHNS*
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mRNA from alignment at chr6:425625..426402+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01310.1 ID=NO06G01310.1|Name=NO06G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=778bp|location=Sequence derived from alignment at chr6:425625..426402+ (Nannochloropsis oceanica)
TAATAGAGGATGTCATGTTCGACCTTAGCTACACCTCCAAGCCTCAGGGT
CGAGTGCAGGGCCGGGGTTTGATGCCGACGCCTCTCAAACAGCTCATGGC
TAAGGAGGGGGCCGATGCGGACGCCGCGCTGACGTACGCAGTAGAATCAA
TGGGCTGTGCGATGAACACGGCAGACTCGGAGCGTATGGCAGGACAATTG
ATGGCGCTGGGCTTCAAGGAGGCCTCCACGCCACAGGAGGTCACAAAGGC
CGATGTGGTGGTTGTTAATACTTGTTCCATCCGTGATCACGCCGAGCAAA
AAGTCTACAGCTATCTTGGCCCGTACATCAACCGGAAGAAGCGCGGCGAC
AACCTGGCCATTGTCGTGGCAGGCTGTGTGGCGCAGCATCCTTGTCCACG
CACACAAGCCCTTATTCAGATTCACAATTCCTGAGCATCCTCACCAAAGG
ACCCATCGTGTCTTCTCTACATCACTCACTCTGTTAGGGTTAGCACGCTT
TTTGTCTTGATCTCTATTTGCCGCCGAGTCCCATCCTTTGAGCTCTACTT
CCCCTTGCATTCCTTTCCTTCTTCCCTCCTTCCCTCCCTTCCCTCAAGCC
CAGCGCAGGCAAGGCGGCAGGAATTGCAACCCCAAGTAGTCCCACACCTC
CTCCTTCCCCTTTTCAACCTACAGAGGCACAAACAGGTAAACCTCTCCTA
TGTGCGTCAGGGAAGAGTTCGGAAACGCTCGTAAAGCCTCCCAGCAATTC
CTCCTCCCTCTCTCCCCTTCCTCCCCCC
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Coding sequence (CDS) from alignment at chr6:425625..426402+

>NO06G01310.1 ID=NO06G01310.1|Name=NO06G01310.1|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at chr6:425625..426402+ (Nannochloropsis oceanica)
ATGTTCGACCTTAGCTACACCTCCAAGCCTCAGGGTCGAGTGCAGGGCCG
GGGTTTGATGCCGACGCCTCTCAAACAGCTCATGGCTAAGGAGGGGGCCG
ATGCGGACGCCGCGCTGACGTACGCAGTAGAATCAATGGGCTGTGCGATG
AACACGGCAGACTCGGAGCGTATGGCAGGACAATTGATGGCGCTGGGCTT
CAAGGAGGCCTCCACGCCACAGGAGGTCACAAAGGCCGATGTGGTGGTTG
TTAATACTTGTTCCATCCGTGATCACGCCGAGCAAAAAGTCTACAGCTAT
CTTGGCCCGTACATCAACCGGAAGAAGCGCGGCGACAACCTGGCCATTGT
CGTGGCAGGCTGTGTGGCGCAGCATCCTTGTCCACGCACACAAGCCCTTA
TTCAGATTCACAATTCCTGA
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Synonyms
Publications