NO06G00430.1, NO06G00430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00430.1
Unique NameNO06G00430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1698
Alignment locationchr6:186190..188482 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:186190..188482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00430.1 vs.
Match: WP_108663820.1 (hypothetical protein [Acuticoccus sp. J103])

HSP 1 Score: 131.7 bits (330), Expect = 6.200e-27
Identity = 76/203 (37.44%), Postives = 109/203 (53.69%), Query Frame = 0 
Query:  306 FDPPFREKAPQAIWRGVTTGGYVWDPLIHDKDNHRKALIDTWGGDVSPK-----VDVAFTGWCQGAQDF---VSYWSPFLKPSLPQAEQLQYRYLISVEGNDVATGLKWMLASNSVVFMPMPRREIWSREGLLMPWVHFIPVQADFSDLLLRIEECERDLERCEAVSERASKYMKSGFGD--IDRTYAQAAARLREYLDKVTI 499
            +D PF EK  + +WRG TTG +  +  +    +  +A I     DVSP      +D+ ++   +   D     S + PFLK  +   +QLQ +YL+ +EGNDVAT LKWMLASNSVV MP P  E W+ E  L P+ H++PV+AD SDL    E C    E C  ++E    +M   F D  +++   +  A    Y +KVT+
Sbjct:  148 WDIPFGEKEDRLVWRGSTTGNFKMNSPLQPPSS--RAFIP----DVSPNLKTLDIDIGYSALTENISDSNLKTSEFEPFLKDRMSMRDQLQAKYLLCLEGNDVATSLKWMLASNSVVIMPHPTVESWACESFLRPFTHYVPVKADLSDLEEVFEWCREHHEHCRRIAESGKAFM-DAFSDRAVEKKLQRRVA--TGYAEKVTL 341
The following BLAST results are available for this feature:
BLAST of NO06G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_108663820.16.200e-2737.44hypothetical protein [Acuticoccus sp. J103][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00430NO06G00430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00430.1NO06G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00430.1.cds1NO06G00430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00430.1.cds2NO06G00430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00430.1.cds3NO06G00430.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00430.1 ID=NO06G00430.1|Name=NO06G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1698bp
ACACTCGCACAGACAAAAGGCCCTCTTCGTTGACATTGTCATGTCTACCT
AAGTCATAAAGCCATCTTTTCATCTAGCTCGCCATGCGGCGCCTACTTTT
TCCTGCCTCCCCCCTCTCCTCAACCACTCCCTGCAGCAGCGACAAAAGCT
CCTGTCGCAGCAAGACCTCCGTACTACCAGCACGACAACAGATTTCTTAT
TTTCTCCTTTTATCTACCGCCACATGCTGCTGCCTCACTTTTCTCCATTT
TTCACACTATGGGCAACACCTCTCCACCCTCCTCCCCTTCCTCCACCTGT
ACCCGGCACATACTGTCACCTCCGTCTTTGCCGTGCCTCCTGAGCCTTCC
TCTCCATACTCCTCCGACGGGTACACCCCTGACTGGGATCACGTCCTGGC
TCCACCGACCCTGCAACCCCAGACTATTCACCTCAATTTAAACCGAGACG
ACGTCACTGAAGACTTGCAAGATCTCTCCCACATTATCCTCACCACAGGC
AGCCTCCTGACAAGCACATGGCCTAATGTGATTCCCCACCTCTCCTTCTC
CCTCCGGGGTATCTATGCCCTCCTCCCTCCGAGGTATCTGTCAAAACCCC
TACTTATTCGAATGGGCGATGGAATAGATCCTGCCCCTTTTCCAGTCCTG
ACCAAAGCGAGGGTAATTAATGATAGCATGGCCATTTTGATGCCCATTGA
ATACGAAAGACATTTCGGCTATGATTTTCATAGGCTAGTGGAGCCAGAGG
AGTTTGGGGAGTCGTCTTTGACGGCGGCGGAGGCTAAGGCTGTGGGTGCT
GCTGATACTGGTGGTGCTGCTACTAGTAGTTATGCTACTGGTGGTTGGGT
CGCTGCAACGGGAAGTGGTGTTGCCGACGTTGATGAGGCTGCGACCAATG
TCGGCGCTGCCACTTCTTCCAATACTCTTTCTTTTAGCTCCTCCTCATCG
TCCTCCCCCGTGTCCTCCTCGTCCTTCTCGTCCTCCTCCCCTCCTCCCTT
CGACCCTCCCTTCCGAGAGAAGGCCCCTCAGGCCATATGGCGAGGTGTTA
CCACCGGCGGCTACGTTTGGGACCCCCTAATCCACGACAAAGACAACCAC
CGAAAAGCATTGATCGATACCTGGGGAGGGGACGTCAGCCCCAAAGTGGA
CGTGGCCTTTACGGGGTGGTGCCAGGGGGCGCAAGACTTCGTCTCCTACT
GGTCGCCCTTCCTCAAGCCCTCCCTCCCCCAAGCCGAGCAGCTCCAATAC
CGCTATCTCATCTCCGTCGAGGGCAACGACGTCGCCACTGGGCTGAAGTG
GATGCTGGCCAGCAACAGCGTGGTCTTCATGCCGATGCCGCGGCGGGAGA
TCTGGAGCCGGGAAGGTCTGTTGATGCCCTGGGTGCATTTCATTCCCGTT
CAAGCCGATTTTTCTGACCTTCTGCTAAGGATAGAGGAGTGCGAGAGGGA
CCTGGAGAGATGCGAGGCCGTAAGCGAGCGGGCAAGCAAGTACATGAAGA
GCGGCTTTGGCGACATTGACAGGACGTACGCACAAGCTGCGGCACGATTG
AGAGAATACCTTGATAAAGTGACGATTGAAATTGTGTAGCTGAATCGAAA
TTAAAGAAAAAGGCTACATATGAAGACATGAAGAGAAGAGAAGCGATAAT
GCACGGCAAGTAATGAAAAAGGAAGACGGAAAATGTCATGCACCGGAA
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protein sequence of NO06G00430.1

>NO06G00430.1-protein ID=NO06G00430.1-protein|Name=NO06G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MRRLLFPASPLSSTTPCSSDKSSCRSKTSVLPARQQISYFLLLSTATCCC
LTFLHFSHYGQHLSTLLPFLHLYPAHTVTSVFAVPPEPSSPYSSDGYTPD
WDHVLAPPTLQPQTIHLNLNRDDVTEDLQDLSHIILTTGSLLTSTWPNVI
PHLSFSLRGIYALLPPRYLSKPLLIRMGDGIDPAPFPVLTKARVINDSMA
ILMPIEYERHFGYDFHRLVEPEEFGESSLTAAEAKAVGAADTGGAATSSY
ATGGWVAATGSGVADVDEAATNVGAATSSNTLSFSSSSSSSPVSSSSFSS
SSPPPFDPPFREKAPQAIWRGVTTGGYVWDPLIHDKDNHRKALIDTWGGD
VSPKVDVAFTGWCQGAQDFVSYWSPFLKPSLPQAEQLQYRYLISVEGNDV
ATGLKWMLASNSVVFMPMPRREIWSREGLLMPWVHFIPVQADFSDLLLRI
EECERDLERCEAVSERASKYMKSGFGDIDRTYAQAAARLREYLDKVTIEI
V*
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mRNA from alignment at chr6:186190..188482+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00430.1 ID=NO06G00430.1|Name=NO06G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp|location=Sequence derived from alignment at chr6:186190..188482+ (Nannochloropsis oceanica)
ACACTCGCACAGACAAAAGGCCCTCTTCGTTGACATTGTCATGTCTACCT
AAGTCATAAAGCCATCTTTTCATCTAGCTCGCCATGCGGCGCCTACTTTT
TCCTGCCTCCCCCCTCTCCTCAACCACTCCCTGCAGCAGCGACAAAAGCT
CCTGTCGCAGCAAGACCTCCGTACTACCAGCACGACAACAGATTTCTTAT
TTTCTCCTTTTATCTACCGCCACATGCTGCTGCCTCACTTTTCTCCATTT
TTCACACTATGGGCAACACCTCTCCACCCTCCTCCCCTTCCTCCACCTGT
ACCCGGCACATACTGTCACCTCCGTCTTTGCCGTGCCTCCTGAGCCTTCC
TCTCCATACTCCTCCGACGGGTACACCCCTGACTGGGATCACGTCCTGGC
TCCACCGACCCTGCAACCCCAGACTATTCACCTCAATTTAAACCGAGACG
ACGTCACTGAAGACTTGCAAGATCTCTCCCACATTATCCTCACCACAGGC
AGCCTCCTGACAAGCACATGGCCTAATGTGATTCCCCACCTCTCCTTCTC
CCTCCGGGGTATCTATGCCCTCCTCCCTCCGAGGTATCTGTCAAAACCCC
TACTTATTCGAATGGGCGATGGAATAGATCCTGCCCCTTTTCCAGTCCTG
ACCAAAGCGAGGGTAATTAATGATAGCATGGCCATTTTGATGCCCATTGA
ATACGAAAGACATTTCGGCTATGATTTTCATAGGCTAGTGGAGCCAGAGG
AGTTTGGGGAGTCGTCTTTGACGGCGGCGGAGGCTAAGGCTGTGGGTGCT
GCTGATACTGGTGGTGCTGCTACTAGTAGTTATGCTACTGGTGGTTGGGT
CGCTGCAACGGGAAGTGGTGTTGCCGACGTTGATGAGGCTGCGACCAATG
TCGGCGCTGCCACTTCTTCCAATACTCTTTCTTTTAGCTCCTCCTCATCG
TCCTCCCCCGTGTCCTCCTCGTCCTTCTCGTCCTCCTCCCCTCCTCCCTT
CGACCCTCCCTTCCGAGAGAAGGCCCCTCAGGCCATATGGCGAGGTGTTA
CCACCGGCGGCTACGTTTGGGACCCCCTAATCCACGACAAAGACAACCAC
CGAAAAGCATTGATCGATACCTGGGGAGGGGACGTCAGCCCCAAAGTGGA
CGTGGCCTTTACGGGGTGGTGCCAGGGGGCGCAAGACTTGTGAGTATTAT
ATCATTCAATTACGTCTTAAAATGTGTTTCAAGCATTTATGTGTAATGGC
GTATATTGATGTGAACCCATTTGACTGACTAGGCGAAAGTCATGGAAGAC
CCTTGCATGTGTGAAGATTGAGAATGGGAAGCCAGTCAATCTGTGCGTGT
GTGCATGGGCACGGCGTCAGGTCTCAGGCCGTGGTGACGCGGAGCAGGAG
GCTCGTCAGTTAGTATTCGTAGTGGTAGCACGTTAGTTCTGTATGAGTCA
TTCTCCCTTCCCTTCTCCGAATGAATGCAGCCATGGACACAATTTCTTTC
TCGACCCCTTTTTATGCCTGTCTCTCATTTCATGTCCCGCCACCCAACCG
GCCTTCACACCGCAGCGTCTCCTACTGGTCGCCCTTCCTCAAGCCCTCCC
TCCCCCAAGCCGAGCAGCTCCAATACCGCTATCTCATCTCCGTCGAGGGC
AACGACGTCGCCACTGGGCTGAAGTGGATGCTGGCCAGCAACAGCGTGGT
CTTCATGCCGATGCCGCGGCGGGAGATCTGGTACAGTTCCCTCTCCCTCT
TTCCCTCCCTCCCTCCCTCTTTCCCTTCCTCTCATCCTCCCTCCGTTAGT
AGCAGCAGAGGCCTCCTTCCTACCGAAGGTCGAAAGTGCATTTAAGATCT
ACTTTCCACGATGTCCATTTCCATTTAATGATTTGAAAGGCAGCATGCTG
GAAGGGCTTAAGACAGCGGCACTGACCATTCCCTCCCTCCTTTGCTCAGG
AGCCGGGAAGGTCTGTTGATGCCCTGGGTGCATTTCATTCCCGTTCAAGC
CGATTTTTCTGACCTTCTGCTAAGGATAGAGGAGTGCGAGAGGGACCTGG
AGAGATGCGAGGCCGTAAGCGAGCGGGCAAGCAAGTACATGAAGAGCGGC
TTTGGCGACATTGACAGGACGTACGCACAAGCTGCGGCACGATTGAGAGA
ATACCTTGATAAAGTGACGATTGAAATTGTGTAGCTGAATCGAAATTAAA
GAAAAAGGCTACATATGAAGACATGAAGAGAAGAGAAGCGATAATGCACG
GCAAGTAATGAAAAAGGAAGACGGAAAATGTCATGCACCGGAA
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Coding sequence (CDS) from alignment at chr6:186190..188482+

>NO06G00430.1 ID=NO06G00430.1|Name=NO06G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=1506bp|location=Sequence derived from alignment at chr6:186190..188482+ (Nannochloropsis oceanica)
ATGCGGCGCCTACTTTTTCCTGCCTCCCCCCTCTCCTCAACCACTCCCTG
CAGCAGCGACAAAAGCTCCTGTCGCAGCAAGACCTCCGTACTACCAGCAC
GACAACAGATTTCTTATTTTCTCCTTTTATCTACCGCCACATGCTGCTGC
CTCACTTTTCTCCATTTTTCACACTATGGGCAACACCTCTCCACCCTCCT
CCCCTTCCTCCACCTGTACCCGGCACATACTGTCACCTCCGTCTTTGCCG
TGCCTCCTGAGCCTTCCTCTCCATACTCCTCCGACGGGTACACCCCTGAC
TGGGATCACGTCCTGGCTCCACCGACCCTGCAACCCCAGACTATTCACCT
CAATTTAAACCGAGACGACGTCACTGAAGACTTGCAAGATCTCTCCCACA
TTATCCTCACCACAGGCAGCCTCCTGACAAGCACATGGCCTAATGTGATT
CCCCACCTCTCCTTCTCCCTCCGGGGTATCTATGCCCTCCTCCCTCCGAG
GTATCTGTCAAAACCCCTACTTATTCGAATGGGCGATGGAATAGATCCTG
CCCCTTTTCCAGTCCTGACCAAAGCGAGGGTAATTAATGATAGCATGGCC
ATTTTGATGCCCATTGAATACGAAAGACATTTCGGCTATGATTTTCATAG
GCTAGTGGAGCCAGAGGAGTTTGGGGAGTCGTCTTTGACGGCGGCGGAGG
CTAAGGCTGTGGGTGCTGCTGATACTGGTGGTGCTGCTACTAGTAGTTAT
GCTACTGGTGGTTGGGTCGCTGCAACGGGAAGTGGTGTTGCCGACGTTGA
TGAGGCTGCGACCAATGTCGGCGCTGCCACTTCTTCCAATACTCTTTCTT
TTAGCTCCTCCTCATCGTCCTCCCCCGTGTCCTCCTCGTCCTTCTCGTCC
TCCTCCCCTCCTCCCTTCGACCCTCCCTTCCGAGAGAAGGCCCCTCAGGC
CATATGGCGAGGTGTTACCACCGGCGGCTACGTTTGGGACCCCCTAATCC
ACGACAAAGACAACCACCGAAAAGCATTGATCGATACCTGGGGAGGGGAC
GTCAGCCCCAAAGTGGACGTGGCCTTTACGGGGTGGTGCCAGGGGGCGCA
AGACTTCGTCTCCTACTGGTCGCCCTTCCTCAAGCCCTCCCTCCCCCAAG
CCGAGCAGCTCCAATACCGCTATCTCATCTCCGTCGAGGGCAACGACGTC
GCCACTGGGCTGAAGTGGATGCTGGCCAGCAACAGCGTGGTCTTCATGCC
GATGCCGCGGCGGGAGATCTGGAGCCGGGAAGGTCTGTTGATGCCCTGGG
TGCATTTCATTCCCGTTCAAGCCGATTTTTCTGACCTTCTGCTAAGGATA
GAGGAGTGCGAGAGGGACCTGGAGAGATGCGAGGCCGTAAGCGAGCGGGC
AAGCAAGTACATGAAGAGCGGCTTTGGCGACATTGACAGGACGTACGCAC
AAGCTGCGGCACGATTGAGAGAATACCTTGATAAAGTGACGATTGAAATT
GTGTAG
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Synonyms
Publications