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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:51397..55345 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00110.1 vs.
Match: XP_008616913.1 (hypothetical protein SDRG_12616 [Saprolegnia diclina VS20]; EQC29609.1 hypothetical protein SDRG_12616 [Saprolegnia diclina VS20]) HSP 1 Score: 255.4 bits (651), Expect = 2.900e-64 Identity = 140/304 (46.05%), Postives = 199/304 (65.46%), Query Frame = 0
Query: 88 DATTLNPDDEALLIVGTLGLKVNKIAGLEVMTQLKELVLRSSLIARMENLSTLTGLTHLELYDNQITSLEELEHLPLLTTLDMSYNLIRSMAAIAHCPLLEVVYLANNKITTMAGLSGLKHLRVLDLGANRIRQIEGLEGLDSLQELWLGKNKIEALPP-SVLAPIRQTLRRLDVQSNRLRSADGLSSEEDGRLSQLEELYLGHNALEDMQAFVGLERLHTLDLSGNQVKSLTGVETLLSLEELWMSYNQVGSFDELGPLVSLPGLQCIYLEHNPIYKEFEYRMKIAALLPALKQLDATPIPGR 391
+ PDDE + VGT GLK + GLE M QL+EL +RS+L+ +M + +L LTHLELYDNQI + LE L L LD+S+N IRS+ ++H LE +Y+ANNK+T + G++ L+ L LDLGANRIR IEGLEGL++L++LWLGKNKI A+ LA LR + +QSNRL + D LS+ LEELYL HN +E + L +L LD+ N++KS+ + ++LE+LW++ N++ SFD++ L S L+ +YLE NP+ +FEYR+KI L +++Q+DATP+ R
Sbjct: 46 ECVEFRPDDEEIYHVGTAGLKARVLDGLEAMVQLRELHVRSNLLYKMTGIESLVNLTHLELYDNQIKKMVGLEKLVKLRVLDLSFNEIRSIPDLSHLTQLEELYVANNKLTHITGIANLRTLVKLDLGANRIRTIEGLEGLENLEQLWLGKNKITAIQGLDALA----KLRVMSIQSNRLLAIDNLSAN-----VALEELYLSHNGIEALANLGHLTKLTILDVGANRIKSIPPMGANVALEDLWLNDNEISSFDDIQHLASNSKLETLYLERNPLASDFEYRLKIQGALASVQQIDATPVVRR 340
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00110.1 ID=NO06G00110.1|Name=NO06G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1349bp
CACACAGGAATAGCACCGCGACTATAAGCATGGAGGATGTCGGCAGCAAG
CCCGTGGCGGCAGCGTGCCAAGAAGCGGTGGCTGCGGAAAAGCAAGGAGA
AGCTGCACCAGGAGGCGAAGCAGAGAACGCAGGGGCAGAGGCACCAGCAG
CGACTGCGCACCAGCATGTCCACCCACATCATAACGGAGGAGGAGGAGGA
GAGGCAACGGCCTGTTGCGACCATTCGCCGGGTGATGGAGCAGGAGGAGG
AGGAATTGCAGGAGAAGCCACGGCCATCGTCACCCCTGCAGACGCCACGA
CTCTGAACCCGGACGACGAGGCCTTGCTCATTGTCGGCACTCTCGGGCTG
AAGGTCAATAAAATAGCGGGCTTGGAAGTCATGACTCAATTGAAGGAGCT
TGTTCTCCGCTCCTCCCTCATTGCACGGATGGAGAACCTGTCCACGTTGA
CGGGCCTTACGCACTTGGAGCTGTATGACAATCAGATTACCTCCCTGGAG
GAGCTGGAGCACCTCCCTCTCCTTACCACCCTCGACATGTCCTACAATCT
CATTCGATCGATGGCGGCCATCGCCCATTGCCCCCTCCTGGAGGTGGTGT
ATCTGGCCAACAACAAGATCACCACCATGGCAGGCCTGTCTGGATTGAAG
CATCTCCGAGTCTTGGACCTGGGCGCTAATCGCATCCGACAAATCGAGGG
GCTGGAAGGCCTCGACTCCCTTCAGGAGTTGTGGTTGGGCAAGAACAAGA
TCGAGGCCCTCCCTCCCTCAGTTCTTGCTCCCATTAGGCAGACCCTAAGG
AGGTTGGACGTGCAGAGCAATCGCCTGCGGAGTGCGGACGGACTGTCGTC
GGAGGAAGACGGCCGCCTATCGCAGCTGGAGGAGCTCTACTTAGGACATA
ACGCTCTTGAGGATATGCAGGCTTTCGTCGGTCTCGAGAGGCTCCACACC
TTGGACCTCAGCGGCAATCAAGTCAAGTCACTGACAGGCGTAGAAACCCT
CCTCTCCCTCGAAGAGCTCTGGATGTCCTACAACCAGGTGGGTAGCTTCG
ACGAACTTGGACCATTGGTCTCCTTGCCGGGTCTGCAGTGCATCTACCTC
GAGCACAATCCTATCTACAAGGAATTCGAGTACCGGATGAAAATTGCTGC
TCTCCTCCCCGCCCTCAAGCAGCTCGATGCCACTCCCATCCCGGGCCGAT
GAGATGCTCCCCCTCCCTCTCTCCCCTCCCTCCTTCCCTCCCCTCCCTTC
GCTCCTTCCCTCCCTCCCTTCCTCAAGCGGTTCAACGCCACCGCAATCCC
TGACGTAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAAA back to topprotein sequence of NO06G00110.1 >NO06G00110.1-protein ID=NO06G00110.1-protein|Name=NO06G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MEDVGSKPVAAACQEAVAAEKQGEAAPGGEAENAGAEAPAATAHQHVHPH
HNGGGGGEATACCDHSPGDGAGGGGIAGEATAIVTPADATTLNPDDEALL
IVGTLGLKVNKIAGLEVMTQLKELVLRSSLIARMENLSTLTGLTHLELYD
NQITSLEELEHLPLLTTLDMSYNLIRSMAAIAHCPLLEVVYLANNKITTM
AGLSGLKHLRVLDLGANRIRQIEGLEGLDSLQELWLGKNKIEALPPSVLA
PIRQTLRRLDVQSNRLRSADGLSSEEDGRLSQLEELYLGHNALEDMQAFV
GLERLHTLDLSGNQVKSLTGVETLLSLEELWMSYNQVGSFDELGPLVSLP
GLQCIYLEHNPIYKEFEYRMKIAALLPALKQLDATPIPGR* back to topmRNA from alignment at chr6:51397..55345- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00110.1 ID=NO06G00110.1|Name=NO06G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=3949bp|location=Sequence derived from alignment at chr6:51397..55345- (Nannochloropsis oceanica)
CACACAGGAATAGCACCGCGACTATAAGCATGGAGGATGTCGGCAGCAAG
CCCGTGGCGGCAGCGTGCCAAGAAGCGGTGGCTGCGGAAAAGCAAGGGTA
AGTGTGTCTACCGGTAACATGTGTTGAGGTTTGATGTCTTTCACGCATTA
GCAGCCCCTCACCTACACATCCAACCAACACACGTACATTTAGAGAAGCT
GCACCAGGAGGCGAAGCAGAGAACGCAGGGGCAGAGGCACCAGCAGCGAC
TGCGCACCAGCATGTCCACCCACATCATAACGGAGGAGGAGGAGGAGAGG
CAACGGCCTGTTGCGACCATTCGCCGGGTGATGGAGCAGGAGGAGGAGGA
ATTGCAGGAGAAGGTAAAATACTCAAGGGTCGTGCTCGGAGAGGCCAGCA
CATGCGCAAGCGTCATGTTTCCCATCCGTCCCTTCCTTCCTTCCTCACAT
CTTCTTTCCTTTGTTCCTTTCTTCCCGCCCTCCGTCCGGTCACAGCCACG
GCCATCGTCACCCCTGCAGACGCCACGACTCTGAACCCGGACGACGAGGC
CTTGCTCATTGTCGGCACTCTCGGGCTGAAGGTGAAGGAGGGAGCGAAGG
GAGGAGGACGGGAGGGCGGGAGGGAAAGAGGGAGATGCATTCACTTACAT
CTCTACCCTCTTTTTCTCCCTCCCTCCGTCCCTCAACCCCGCCTTTCTCG
TCAGGTCAATAAAATAGCGGGCTTGGAAGTCATGACTCAATTGAAGGAGC
TTGTTCTCCGCTCCTCCCTCATTGCACGGATGGAGAACCTGTCCACGTTG
ACGGGTGAGGGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
TTCTCCCTCCCTCCCTCCCTCCCTCTCTTTCTCCCTCGGTTACTCCCTCC
TTTCCTCCCTCCCTTCCCCAATCCCTTTCTCGGTTACTCCGTCCTTCGAT
GGCCCCCATTTGTCCTCTCATTGCGTGGATATTGAGGTGCTCAATTCTGA
CCAGCAGAATTGCAGGCAACGATGAGGAGGGAGATGGGAGGGAGGGAGGG
AGAGAGGGAGGGAGGAAGGGTGCGGTCCAGTGGAGTTAACACATAACACC
CACGCGGTCACAGGCCTTACGCACTTGGAGCTGTATGACAATCAGATTAC
CTCCCTGGAGGTACGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGGAGGGA
GGGAGGGGAGAGGTGTGCATGAAATGTCGAGAGAGGAAGATGGTGCGTCT
CTCAATCATTCACGTACCTCCCTCCCTCCCTTCCTCCCTCCCCCTCTCCC
TCCTTCCCTTCTTGTTCAGGAGCTGGAGCACCTCCCTCTCCTTACCACCC
TCGACATGTCCTACAATCTCATTCGATCGATGGCGGCCATCGCCCATTGC
CCCCTCCTGGAGGTACGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCTTTTCTCCTTTCACTTCTCCTGCATGCCTTCTTTCTCTCTC
TCATACATACTCAACCGCTCCCTCCCTCTCTCGCTCGCTCCCTCCCTCTC
TTTTCAGGTGGTGTATCTGGCCAACAACAAGATCACCACCATGGCAGGTA
CGTCCTCAACAGAAAGGGAGGGAGAGAGGGAGGGAGGGACAGAATGACTG
GGAATTCATTGTTGGCGCGGACTTTATCTTACCTTCTATCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCTTCCCTGCCTCCTTTCCTCCCTCTCCCCCTC
CTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCCTGTCTGGAT
TGAAGCATCTCCGAGTCTTGGACCTGGGCGCTAATCGCATCCGACAAATC
GAGGGGCTGGAAGGCCTCGACTCCCTTCAGGTATACACAGAGAGAGAGTG
AGAGAGAGAGAGGAACATATATATACACACACACACATATATATACACAT
ACACACATACATATATATACACACATACATACACACACATATGTGTATAT
ACATATATATGCACACATACATATATACACATATATACACACACATATAT
GTATACACACATACACACATATATATATATATATATATACACTTACACAC
ATACATATATATACACACACATACACACATGTATATATACATATACACAC
ATACATATATACACATACACACACATACATGTATATACATATATATATAC
ACACATACATATATACACATACACACACATACATATATACACATACACAC
ATATATATATACACACATACATAAACACACATATATGTATATACATATAT
ATACACACACATAGATATATACACACATATATGTATATACATATATATAC
ACACACATACATATGTACACATACACACACATATATATATACACACACAT
ACACACACACATATATACACACACACATACACACATATATATGTATATAC
ATATATACACACACATACATACACACATGTTTATACATACACACATGTAC
ATACGCCCTCCCTCTCTTCCTGCGTGTCCGGACTCTCTACAGGAACGTCG
CTATACCCTCTCCCCCCTCCCTCCCTCCCGACCTTCCCCCCTCCCTCCCT
TCCACCATGCTCGCTCAAAAATCTTCCATGCCCATCCCCTCCTCCCTCCC
TCCCTCCCTCCCTCAGGAGTTGTGGTTGGGCAAGAACAAGATCGAGGCCC
TCCCTCCCTCAGTTCTTGCTCCCATTAGGCAGACCCTAAGGAGGTTGGAC
GTGCAGAGCAATCGCCTGCGGAGTGCGGACGGACTGTCGTCGGAGGAAGG
TGAGGGAGGGAGGGAGAAAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAAGGTAGTCTAATCCAAATCTTCTAC
ATCTGTATCTCCTGCCCTCACGAAACACCCTCTCCCTCCCTCCCTCCCTC
CCTCACTCCCCCCCTTCCCCAGACGGCCGCCTATCGCAGCTGGAGGAGCT
CTACTTAGGACATAACGCTCTTGAGGATATGCAGGCTTTCGTCGGTCTCG
AGAGGCTCCACACCTTGGTAACCCCTCCCTCGCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTTCCTTCCTCCCTCCCTTGCTTCATTCCTACGTTTCCTC
CTCCCGCCGCTAACCCTCTCTCCCCCCCTCCCTCCTCCAGGACCTCAGCG
GCAATCAAGTCAAGTCACTGACAGGCGTAGAAACCCTCCTCTCCCTCGAA
GAGCTCTGGATGTCCTACAACCAGGTACAGCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCTTCCTTCCCCGTT
TCCTTCTCTCCCTGTACGCTCCCTTGCCTTTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCTACCTACCCTCCTACTCTCCCTCTCTCCCTCCAAC
CGCTCCATCCCCTCCTCACCTCGCCCTCCCTCCCTCCCTCCCTCCCACCC
GCAGGTGGGTAGCTTCGACGAACTTGGACCATTGGTCTCCTTGCCGGGTC
TGCAGTGCATCTACCTCGAGCACAATCCTATCTACAAGTAAGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGGGCATCAGACGCAGTCATTCCCCGT
GATCGAAGTAAATTCTGACGCCCTCTTCCTCCCTCCCTTCCTCCCTCCCT
CCTTCCTTCCCCCCCTCCAGGGAATTCGAGTACCGGATGAAAATTGCTGC
TCTCCTCCCCGCCCTCAAGCAGCTCGATGCCACTCCCATCCCGGGCCGAT
GAGATGCTCCCCCTCCCTCTCTCCCCTCCCTCCTTCCCTCCCCTCCCTTC
GCTCCTTCCCTCCCTCCCTTCCTCAAGCGGTTCAACGCCACCGCAATCCC
TGACGTAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAAA back to topCoding sequence (CDS) from alignment at chr6:51397..55345- >NO06G00110.1 ID=NO06G00110.1|Name=NO06G00110.1|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at chr6:51397..55345- (Nannochloropsis oceanica)
ATGGAGGATGTCGGCAGCAAGCCCGTGGCGGCAGCGTGCCAAGAAGCGGT
GGCTGCGGAAAAGCAAGGAGAAGCTGCACCAGGAGGCGAAGCAGAGAACG
CAGGGGCAGAGGCACCAGCAGCGACTGCGCACCAGCATGTCCACCCACAT
CATAACGGAGGAGGAGGAGGAGAGGCAACGGCCTGTTGCGACCATTCGCC
GGGTGATGGAGCAGGAGGAGGAGGAATTGCAGGAGAAGCCACGGCCATCG
TCACCCCTGCAGACGCCACGACTCTGAACCCGGACGACGAGGCCTTGCTC
ATTGTCGGCACTCTCGGGCTGAAGGTCAATAAAATAGCGGGCTTGGAAGT
CATGACTCAATTGAAGGAGCTTGTTCTCCGCTCCTCCCTCATTGCACGGA
TGGAGAACCTGTCCACGTTGACGGGCCTTACGCACTTGGAGCTGTATGAC
AATCAGATTACCTCCCTGGAGGAGCTGGAGCACCTCCCTCTCCTTACCAC
CCTCGACATGTCCTACAATCTCATTCGATCGATGGCGGCCATCGCCCATT
GCCCCCTCCTGGAGGTGGTGTATCTGGCCAACAACAAGATCACCACCATG
GCAGGCCTGTCTGGATTGAAGCATCTCCGAGTCTTGGACCTGGGCGCTAA
TCGCATCCGACAAATCGAGGGGCTGGAAGGCCTCGACTCCCTTCAGGAGT
TGTGGTTGGGCAAGAACAAGATCGAGGCCCTCCCTCCCTCAGTTCTTGCT
CCCATTAGGCAGACCCTAAGGAGGTTGGACGTGCAGAGCAATCGCCTGCG
GAGTGCGGACGGACTGTCGTCGGAGGAAGACGGCCGCCTATCGCAGCTGG
AGGAGCTCTACTTAGGACATAACGCTCTTGAGGATATGCAGGCTTTCGTC
GGTCTCGAGAGGCTCCACACCTTGGACCTCAGCGGCAATCAAGTCAAGTC
ACTGACAGGCGTAGAAACCCTCCTCTCCCTCGAAGAGCTCTGGATGTCCT
ACAACCAGGTGGGTAGCTTCGACGAACTTGGACCATTGGTCTCCTTGCCG
GGTCTGCAGTGCATCTACCTCGAGCACAATCCTATCTACAAGGAATTCGA
GTACCGGATGAAAATTGCTGCTCTCCTCCCCGCCCTCAAGCAGCTCGATG
CCACTCCCATCCCGGGCCGATGA back to top
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