NO05G04420.1, NO05G04420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04420.1
Unique NameNO05G04420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1119
Alignment locationchr5:1145388..1146627 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1145388..1146627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04420.1 vs.
Match: EWM28043.1 (dehydrogenase reductase sdr family member 13 precursor [Nannochloropsis gaditana])

HSP 1 Score: 591.7 bits (1524), Expect = 1.600e-165
Identity = 290/371 (78.17%), Postives = 325/371 (87.60%), Query Frame = 0 
Query:    1 MLTPLHWVWNGPLALGWVVGSSIVFPVLRKLGLAAEPNTLDF-TNDMRGKTIIVTGSNTGIGKATALNIAKMGATVVLACRSLERAKAAQEDMLVALKALDTS-RYDFPFAAKGTFVCLPLDLSSFASIKAFAQEYRAKLKRLDALVLNAGLANGSGTTKEGFEVMMGTNYLGHFYLVKLLLDVLKATPDSRVVSVSSLMHEFGCLDWQGSLQNKYSSLKDRLFSSRYNDSKLALVLLTLELRHRLKGTSVRAVAVSPGAVASDIWRSFPSWYKRLVLDPVSSLAFLSNEQGSIPSVHAATHRALPLEDNENETDVLYFHPYWSPSSRFLMPFEVMGPFHGFIRAGPRLPANARAVAKELWYQSDKLVIQH 370
            MLTPLHW+WNGPLALGWV  S+IVFP+LRK+GL  E N LDF  NDMRGK +IVTGSNTGIG+ATALNI KMGATV+LACRS+ERAKAA+++ML  L +LD   R+DFPFA KGT VC+ LDL SFASIK FA+++  + KRLDALVLNAGLANGSG TKEGFE+M GTNYLGHFYL KLL+DV+KATPDSR+VSVSSLMHEFGCLDWQGSL   Y +LKDR+FSSRYNDSKLALVL+TLELRHRLKGTSVRA+AVSPGAVASDIWRSFP WY+RLVLDPV SLAFLSNEQGSIPSV+AATH  +  ED ++ET+V YFHPYWSPS  FLMP+EVMGPF GF RA PRLP NARAVAKELWY+S+K VIQH
Sbjct:    1 MLTPLHWIWNGPLALGWVTSSAIVFPILRKVGLVPEANKLDFIANDMRGKIVIVTGSNTGIGRATALNICKMGATVILACRSMERAKAARDEMLEELHSLDAGHRFDFPFARKGTLVCMRLDLGSFASIKTFAEDFLGRYKRLDALVLNAGLANGSGRTKEGFEIMFGTNYLGHFYLTKLLMDVVKATPDSRIVSVSSLMHEFGCLDWQGSLSGNYRALKDRIFSSRYNDSKLALVLMTLELRHRLKGTSVRAIAVSPGAVASDIWRSFPLWYRRLVLDPVMSLAFLSNEQGSIPSVYAATHSNVSDEDEDDETNVPYFHPYWSPSPSFLMPWEVMGPFIGFTRARPRLPRNARAVAKELWYESEKQVIQH 371
The following BLAST results are available for this feature:
BLAST of NO05G04420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28043.11.600e-16578.17dehydrogenase reductase sdr family member 13 precu... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04420NO05G04420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04420.1NO05G04420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04420.1.cds1NO05G04420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04420.1.cds2NO05G04420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04420.1 ID=NO05G04420.1|Name=NO05G04420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1119bp
ATGTTGACTCCCCTGCATTGGGTTTGGAATGGACCCCTTGCCCTGGGATG
GGTCGTAGGGTCTTCTATCGTCTTCCCAGTGCTGCGGAAATTAGGCTTGG
CCGCTGAGCCCAACACACTGGATTTTACAAATGACATGCGAGGCAAGACC
ATCATCGTCACAGGCAGCAACACAGGCATAGGCAAGGCTACTGCTCTAAA
CATTGCAAAGATGGGTGCCACCGTCGTTTTGGCATGCCGCTCTCTGGAGC
GGGCTAAGGCGGCTCAAGAAGATATGCTGGTGGCGCTCAAGGCCCTGGAC
ACCTCTCGATACGATTTCCCCTTCGCTGCGAAAGGAACTTTTGTCTGTTT
GCCCTTGGATTTGAGCAGCTTTGCGTCCATCAAGGCTTTTGCCCAGGAAT
ACCGTGCTAAACTTAAGCGCTTGGATGCTCTTGTGCTGAACGCTGGATTG
GCCAATGGCTCTGGGACAACCAAGGAGGGTTTCGAGGTGATGATGGGGAC
CAACTACCTCGGGCACTTTTACCTGGTTAAGTTACTGTTGGACGTGCTCA
AAGCCACCCCGGACTCCCGCGTCGTGAGCGTGTCCTCTTTGATGCATGAA
TTCGGCTGCTTGGATTGGCAAGGAAGCCTGCAGAATAAATACAGCTCTCT
AAAAGACCGTCTCTTCTCAAGTCGTTACAATGATTCCAAGCTTGCCCTGG
TACTACTCACGCTCGAGCTCCGGCACCGTCTCAAGGGGACGTCCGTCCGA
GCCGTGGCTGTCTCACCTGGAGCAGTTGCCTCAGATATTTGGCGTAGCTT
TCCGTCATGGTACAAACGGCTTGTGCTTGACCCCGTGTCCTCCCTCGCAT
TCCTCTCCAACGAGCAAGGAAGCATTCCGAGTGTCCATGCCGCTACCCAC
CGAGCATTGCCTTTGGAGGACAATGAAAACGAGACGGATGTCTTGTATTT
CCACCCGTATTGGTCACCTTCTTCGCGATTTCTCATGCCGTTTGAAGTCA
TGGGACCTTTCCATGGCTTCATTCGGGCCGGGCCGCGTTTGCCCGCGAAT
GCGCGGGCTGTGGCAAAGGAATTGTGGTATCAGAGTGATAAACTTGTCAT
CCAGCACGCTCCAGCATAA
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protein sequence of NO05G04420.1

>NO05G04420.1-protein ID=NO05G04420.1-protein|Name=NO05G04420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MLTPLHWVWNGPLALGWVVGSSIVFPVLRKLGLAAEPNTLDFTNDMRGKT
IIVTGSNTGIGKATALNIAKMGATVVLACRSLERAKAAQEDMLVALKALD
TSRYDFPFAAKGTFVCLPLDLSSFASIKAFAQEYRAKLKRLDALVLNAGL
ANGSGTTKEGFEVMMGTNYLGHFYLVKLLLDVLKATPDSRVVSVSSLMHE
FGCLDWQGSLQNKYSSLKDRLFSSRYNDSKLALVLLTLELRHRLKGTSVR
AVAVSPGAVASDIWRSFPSWYKRLVLDPVSSLAFLSNEQGSIPSVHAATH
RALPLEDNENETDVLYFHPYWSPSSRFLMPFEVMGPFHGFIRAGPRLPAN
ARAVAKELWYQSDKLVIQHAPA*
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mRNA from alignment at chr5:1145388..1146627+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04420.1 ID=NO05G04420.1|Name=NO05G04420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1240bp|location=Sequence derived from alignment at chr5:1145388..1146627+ (Nannochloropsis oceanica)
ATGTTGACTCCCCTGCATTGGGTTTGGAATGGACCCCTTGCCCTGGGATG
GGTCGTAGGGTCTTCTATCGTCTTCCCAGTGCTGCGGAAATTAGGCTTGG
CCGCTGAGCCCAACACACTGGATTTTACAAATGACATGCGAGGCAAGACC
ATCATCGTCACAGGTAAATTTCTTTGCTCCTTAGGCCCTCATTTACTCCC
TCCTTCCTTCCATTCCGAGAGCGGGGTATGTGCGAGAGAAGGTTAGAACG
GAAAGACTGATGCCTCTTCTATCATTTTCCCCAGGCAGCAACACAGGCAT
AGGCAAGGCTACTGCTCTAAACATTGCAAAGATGGGTGCCACCGTCGTTT
TGGCATGCCGCTCTCTGGAGCGGGCTAAGGCGGCTCAAGAAGATATGCTG
GTGGCGCTCAAGGCCCTGGACACCTCTCGATACGATTTCCCCTTCGCTGC
GAAAGGAACTTTTGTCTGTTTGCCCTTGGATTTGAGCAGCTTTGCGTCCA
TCAAGGCTTTTGCCCAGGAATACCGTGCTAAACTTAAGCGCTTGGATGCT
CTTGTGCTGAACGCTGGATTGGCCAATGGCTCTGGGACAACCAAGGAGGG
TTTCGAGGTGATGATGGGGACCAACTACCTCGGGCACTTTTACCTGGTTA
AGTTACTGTTGGACGTGCTCAAAGCCACCCCGGACTCCCGCGTCGTGAGC
GTGTCCTCTTTGATGCATGAATTCGGCTGCTTGGATTGGCAAGGAAGCCT
GCAGAATAAATACAGCTCTCTAAAAGACCGTCTCTTCTCAAGTCGTTACA
ATGATTCCAAGCTTGCCCTGGTACTACTCACGCTCGAGCTCCGGCACCGT
CTCAAGGGGACGTCCGTCCGAGCCGTGGCTGTCTCACCTGGAGCAGTTGC
CTCAGATATTTGGCGTAGCTTTCCGTCATGGTACAAACGGCTTGTGCTTG
ACCCCGTGTCCTCCCTCGCATTCCTCTCCAACGAGCAAGGAAGCATTCCG
AGTGTCCATGCCGCTACCCACCGAGCATTGCCTTTGGAGGACAATGAAAA
CGAGACGGATGTCTTGTATTTCCACCCGTATTGGTCACCTTCTTCGCGAT
TTCTCATGCCGTTTGAAGTCATGGGACCTTTCCATGGCTTCATTCGGGCC
GGGCCGCGTTTGCCCGCGAATGCGCGGGCTGTGGCAAAGGAATTGTGGTA
TCAGAGTGATAAACTTGTCATCCAGCACGCTCCAGCATAA
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Coding sequence (CDS) from alignment at chr5:1145388..1146627+

>NO05G04420.1 ID=NO05G04420.1|Name=NO05G04420.1|organism=Nannochloropsis oceanica|type=CDS|length=1119bp|location=Sequence derived from alignment at chr5:1145388..1146627+ (Nannochloropsis oceanica)
ATGTTGACTCCCCTGCATTGGGTTTGGAATGGACCCCTTGCCCTGGGATG
GGTCGTAGGGTCTTCTATCGTCTTCCCAGTGCTGCGGAAATTAGGCTTGG
CCGCTGAGCCCAACACACTGGATTTTACAAATGACATGCGAGGCAAGACC
ATCATCGTCACAGGCAGCAACACAGGCATAGGCAAGGCTACTGCTCTAAA
CATTGCAAAGATGGGTGCCACCGTCGTTTTGGCATGCCGCTCTCTGGAGC
GGGCTAAGGCGGCTCAAGAAGATATGCTGGTGGCGCTCAAGGCCCTGGAC
ACCTCTCGATACGATTTCCCCTTCGCTGCGAAAGGAACTTTTGTCTGTTT
GCCCTTGGATTTGAGCAGCTTTGCGTCCATCAAGGCTTTTGCCCAGGAAT
ACCGTGCTAAACTTAAGCGCTTGGATGCTCTTGTGCTGAACGCTGGATTG
GCCAATGGCTCTGGGACAACCAAGGAGGGTTTCGAGGTGATGATGGGGAC
CAACTACCTCGGGCACTTTTACCTGGTTAAGTTACTGTTGGACGTGCTCA
AAGCCACCCCGGACTCCCGCGTCGTGAGCGTGTCCTCTTTGATGCATGAA
TTCGGCTGCTTGGATTGGCAAGGAAGCCTGCAGAATAAATACAGCTCTCT
AAAAGACCGTCTCTTCTCAAGTCGTTACAATGATTCCAAGCTTGCCCTGG
TACTACTCACGCTCGAGCTCCGGCACCGTCTCAAGGGGACGTCCGTCCGA
GCCGTGGCTGTCTCACCTGGAGCAGTTGCCTCAGATATTTGGCGTAGCTT
TCCGTCATGGTACAAACGGCTTGTGCTTGACCCCGTGTCCTCCCTCGCAT
TCCTCTCCAACGAGCAAGGAAGCATTCCGAGTGTCCATGCCGCTACCCAC
CGAGCATTGCCTTTGGAGGACAATGAAAACGAGACGGATGTCTTGTATTT
CCACCCGTATTGGTCACCTTCTTCGCGATTTCTCATGCCGTTTGAAGTCA
TGGGACCTTTCCATGGCTTCATTCGGGCCGGGCCGCGTTTGCCCGCGAAT
GCGCGGGCTGTGGCAAAGGAATTGTGGTATCAGAGTGATAAACTTGTCAT
CCAGCACGCTCCAGCATAA
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Synonyms
Publications