NO05G04260.1, NO05G04260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04260.1
Unique NameNO05G04260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1609
Alignment locationchr5:1095214..1097045 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1095214..1097045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04260.1 vs.
Match: EWM27992.1 (transferase caf17 mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 450.7 bits (1158), Expect = 5.800e-123
Identity = 264/480 (55.00%), Postives = 320/480 (66.67%), Query Frame = 0 
Query:    3 SSTSTTRRRVAASWLQCASASATAASILRAPKTPRRLSSSSTIPTRWDPHVMATNRSGGIWEVDLTRGESNGKRCILQLAGPDAPKLVQGLITNDIVHLTEAKASLAAAFLTNKGRVITESVITIATDAKEAPHGGPDKFFLDLPVEVKEGLLRHLRLFKLRAKVQITDLTATARVCVVLGLPDEVLVDLDVVKKHWTGRGEEVLGLGPDPRIALPGQHPLGIRAIVT-PSPAFP--FFCSQQQQQEHQQQPREVYEALRFLHGVGEGPDLVERLPSECNLDLTHAINFHKGCYLGQELTARTQYKGVIRKRVLPFFFLPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSEALPVGSFSDFL----PFPSACPFMASPLIPCSSSSSTSSKGANIVDEITGKTVGSIVSCAKGSNLGLALFRLEHILAGGPKVRLVVAGKGKVGGEEREEKQMVRAFLPPWWPTALDLATGKV 476
            + ++T   RV  S  +  ++      I R   T  + S  S+  + WDP ++AT   G +WEVDLT GE +G+R ++QLAGP+APKLVQGLITNDI+HLT +KASLAA FLTNKGR+ITESVITIATDAKEAPHGGPDKFFLD+P++VK+GLL+HLRLFKLR+KV ITDL++TARVC ++GLP   + DL+ V++HW+ RG EVLGLGPDPR+ L  + PLGIR I+  P P+ P     S  +     Q+ RE  EALRFL+GVGEGPDLVERLPSECNLDLTHAINFHKGCYLGQELTARTQ+KGVIRKR+LP F  P S    SS   +                            PV    D L      P A PF+A P  P    S    KGA I+D+ +GK VGS+VS A GSNLGLAL RLE  L     V+LV    G   GE+R+  Q V AFLP WWP+ +DLATGK+
Sbjct:   23 TGSTTCAARVRTSLEEIPTSLFRFQEIRRPGPTKPQRSRYSSATSTWDPQILATE--GKLWEVDLTSGEGDGRRGVIQLAGPEAPKLVQGLITNDIIHLTGSKASLAAGFLTNKGRLITESVITIATDAKEAPHGGPDKFFLDVPIDVKKGLLQHLRLFKLRSKVTITDLSSTARVCALVGLPHARVSDLERVREHWSARGAEVLGLGPDPRVMLGDRFPLGIRGIIHFPDPSSPPSSLPSSARPLPCTQEAREALEALRFLYGVGEGPDLVERLPSECNLDLTHAINFHKGCYLGQELTARTQFKGVIRKRLLPVFLFPDSLPPPSSKVEADMQR------------------------PVQKLGDLLLPSNANPLAAPFLAGPPSP----SPALVKGAEIIDKASGKAVGSLVSLATGSNLGLALLRLEPTLGAEQGVKLVARSPG-AEGEKRQ--QQVLAFLPDWWPSGIDLATGKI 469
The following BLAST results are available for this feature:
BLAST of NO05G04260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27992.15.800e-12355.00transferase caf17 mitochondrial-like protein [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04260NO05G04260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04260.1NO05G04260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04260.1.cds1NO05G04260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04260.1.cds2NO05G04260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04260.1 ID=NO05G04260.1|Name=NO05G04260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1609bp
ATGCATTCTTCCACCTCTACGACAAGACGGAGAGTAGCTGCGTCCTGGCT
GCAGTGTGCCAGTGCGTCCGCCACAGCGGCTTCAATTTTACGGGCACCTA
AAACACCAAGACGGCTCAGCAGCAGCAGCACAATCCCAACAAGATGGGAC
CCTCATGTCATGGCAACCAACAGATCAGGCGGCATCTGGGAAGTGGACCT
GACTCGCGGGGAGAGCAATGGCAAGCGGTGCATCCTCCAACTGGCAGGGC
CCGATGCTCCCAAGCTTGTGCAAGGTCTAATCACGAACGACATTGTCCAT
TTGACCGAAGCAAAAGCATCGTTGGCAGCGGCATTTTTGACGAATAAAGG
ACGGGTGATTACGGAGAGTGTCATAACCATTGCGACCGACGCCAAGGAAG
CGCCGCATGGTGGCCCTGACAAATTCTTCCTAGACCTTCCTGTGGAGGTT
AAAGAAGGACTCCTCCGTCATTTGCGCCTGTTCAAACTTCGTGCCAAAGT
GCAGATAACTGATCTGACGGCCACGGCGAGGGTGTGCGTGGTGCTGGGCT
TGCCGGACGAGGTACTCGTGGATCTAGATGTGGTGAAGAAGCATTGGACA
GGACGAGGAGAAGAGGTCCTGGGGCTCGGACCCGACCCTCGGATTGCCTT
GCCGGGACAACATCCTTTGGGCATTCGTGCAATCGTTACACCCTCCCCTG
CCTTTCCCTTTTTTTGCTCGCAGCAGCAACAGCAGGAGCACCAGCAGCAG
CCACGCGAAGTTTATGAGGCACTGCGTTTTTTGCATGGGGTTGGGGAAGG
GCCAGACTTGGTTGAACGGTTGCCTTCGGAATGTAACCTCGATTTAACTC
ATGCCATTAATTTTCACAAAGGCTGCTACCTTGGGCAAGAGCTCACGGCC
CGCACGCAGTATAAGGGCGTGATTCGGAAGCGGGTGTTGCCTTTCTTCTT
CCTTCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCATCATCATCAGAAGCACTTCCAGTCGGTTCCTTTTCTGATTT
CCTCCCTTTTCCATCTGCTTGTCCTTTCATGGCTTCCCCACTGATTCCCT
GCAGTAGTAGCAGCAGCACCAGCAGTAAAGGTGCGAATATTGTGGATGAA
ATTACGGGGAAGACTGTTGGGTCTATCGTATCTTGTGCCAAAGGGAGCAA
TCTCGGCCTGGCACTTTTTCGACTTGAGCATATACTGGCAGGCGGACCTA
AGGTGCGTTTGGTGGTGGCTGGGAAGGGGAAGGTCGGAGGGGAGGAGAGA
GAGGAGAAGCAGATGGTGAGGGCGTTTTTGCCGCCGTGGTGGCCGACGGC
ATTGGATTTAGCAACGGGGAAGGTGCGGGCCTGAAATTCGAGGTGGAGGT
GGAGGTGGAGGAGAGAGCAGAAAAAGAGGTGGAGATAAGGAGGAGGAAGA
GGGAGAGGAAGAGGAAGAGGTGGCAAGGCAATGGACTGTTTGAAATGCAT
GCGATTCTGATGTTGAAGGACAAGTAAATAAAGACAATAGAACGATTTTG
GATTTACAT
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protein sequence of NO05G04260.1

>NO05G04260.1-protein ID=NO05G04260.1-protein|Name=NO05G04260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MHSSTSTTRRRVAASWLQCASASATAASILRAPKTPRRLSSSSTIPTRWD
PHVMATNRSGGIWEVDLTRGESNGKRCILQLAGPDAPKLVQGLITNDIVH
LTEAKASLAAAFLTNKGRVITESVITIATDAKEAPHGGPDKFFLDLPVEV
KEGLLRHLRLFKLRAKVQITDLTATARVCVVLGLPDEVLVDLDVVKKHWT
GRGEEVLGLGPDPRIALPGQHPLGIRAIVTPSPAFPFFCSQQQQQEHQQQ
PREVYEALRFLHGVGEGPDLVERLPSECNLDLTHAINFHKGCYLGQELTA
RTQYKGVIRKRVLPFFFLPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSEALPVGSFSDFLPFPSACPFMASPLIPCSSSSSTSSKGANIVDE
ITGKTVGSIVSCAKGSNLGLALFRLEHILAGGPKVRLVVAGKGKVGGEER
EEKQMVRAFLPPWWPTALDLATGKVRA*
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mRNA from alignment at chr5:1095214..1097045+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04260.1 ID=NO05G04260.1|Name=NO05G04260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1832bp|location=Sequence derived from alignment at chr5:1095214..1097045+ (Nannochloropsis oceanica)
ATGCATTCTTCCACCTCTACGACAAGACGGAGAGTAGCTGCGTCCTGGCT
GCAGTGTGCCAGTGCGTCCGCCACAGCGGCTTCAATTTTACGGGTACGTG
GCACTTTCATTCACCTTGAAAGAACCCGTCGCTCCGTCGTCGTCCCGTCC
AGGTCTTACACACTTCAGTCTAAAATGCTTGTCCTGATAGTATGGTTTCT
CCTTCGAACAAGCCCCTGCTCCTCGAAAGTAAAACACTCCCTACTACCCT
CTGCCCCGCCTCTGCCCACGAGCCATCATCTTCATCTTGTAATTTATCCC
CTTAACACCTCCGTAGGCACCTAAAACACCAAGACGGCTCAGCAGCAGCA
GCACAATCCCAACAAGATGGGACCCTCATGTCATGGCAACCAACAGATCA
GGCGGCATCTGGGAAGTGGACCTGACTCGCGGGGAGAGCAATGGCAAGCG
GTGCATCCTCCAACTGGCAGGGCCCGATGCTCCCAAGCTTGTGCAAGGTC
TAATCACGAACGACATTGTCCATTTGACCGAAGCAAAAGCATCGTTGGCA
GCGGCATTTTTGACGAATAAAGGACGGGTGATTACGGAGAGTGTCATAAC
CATTGCGACCGACGCCAAGGAAGCGCCGCATGGTGGCCCTGACAAATTCT
TCCTAGACCTTCCTGTGGAGGTTAAAGAAGGACTCCTCCGTCATTTGCGC
CTGTTCAAACTTCGTGCCAAAGTGCAGATAACTGATCTGACGGCCACGGC
GAGGGTGTGCGTGGTGCTGGGCTTGCCGGACGAGGTACTCGTGGATCTAG
ATGTGGTGAAGAAGCATTGGACAGGACGAGGAGAAGAGGTCCTGGGGCTC
GGACCCGACCCTCGGATTGCCTTGCCGGGACAACATCCTTTGGGCATTCG
TGCAATCGTTACACCCTCCCCTGCCTTTCCCTTTTTTTGCTCGCAGCAGC
AACAGCAGGAGCACCAGCAGCAGCCACGCGAAGTTTATGAGGCACTGCGT
TTTTTGCATGGGGTTGGGGAAGGGCCAGACTTGGTTGAACGGTTGCCTTC
GGAATGTAACCTCGATTTAACTCATGCCATTAATTTTCACAAAGGCTGCT
ACCTTGGGCAAGAGCTCACGGCCCGCACGCAGTATAAGGGCGTGATTCGG
AAGCGGGTGTTGCCTTTCTTCTTCCTTCCTTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCATCATCAGAAGCACTT
CCAGTCGGTTCCTTTTCTGATTTCCTCCCTTTTCCATCTGCTTGTCCTTT
CATGGCTTCCCCACTGATTCCCTGCAGTAGTAGCAGCAGCACCAGCAGTA
AAGGTGCGAATATTGTGGATGAAATTACGGGGAAGACTGTTGGGTCTATC
GTATCTTGTGCCAAAGGGAGCAATCTCGGCCTGGCACTTTTTCGACTTGA
GCATATACTGGCAGGCGGACCTAAGGTGCGTTTGGTGGTGGCTGGGAAGG
GGAAGGTCGGAGGGGAGGAGAGAGAGGAGAAGCAGATGGTGAGGGCGTTT
TTGCCGCCGTGGTGGCCGACGGCATTGGATTTAGCAACGGGGAAGGTGCG
GGCCTGAAATTCGAGGTGGAGGTGGAGGTGGAGGAGAGAGCAGAAAAAGA
GGTGGAGATAAGGAGGAGGAAGAGGGAGAGGAAGAGGAAGAGGTGGCAAG
GCAATGGACTGTTTGAAATGCATGCGATTCTGATGTTGAAGGACAAGTAA
ATAAAGACAATAGAACGATTTTGGATTTACAT
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Coding sequence (CDS) from alignment at chr5:1095214..1097045+

>NO05G04260.1 ID=NO05G04260.1|Name=NO05G04260.1|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at chr5:1095214..1097045+ (Nannochloropsis oceanica)
ATGCATTCTTCCACCTCTACGACAAGACGGAGAGTAGCTGCGTCCTGGCT
GCAGTGTGCCAGTGCGTCCGCCACAGCGGCTTCAATTTTACGGGCACCTA
AAACACCAAGACGGCTCAGCAGCAGCAGCACAATCCCAACAAGATGGGAC
CCTCATGTCATGGCAACCAACAGATCAGGCGGCATCTGGGAAGTGGACCT
GACTCGCGGGGAGAGCAATGGCAAGCGGTGCATCCTCCAACTGGCAGGGC
CCGATGCTCCCAAGCTTGTGCAAGGTCTAATCACGAACGACATTGTCCAT
TTGACCGAAGCAAAAGCATCGTTGGCAGCGGCATTTTTGACGAATAAAGG
ACGGGTGATTACGGAGAGTGTCATAACCATTGCGACCGACGCCAAGGAAG
CGCCGCATGGTGGCCCTGACAAATTCTTCCTAGACCTTCCTGTGGAGGTT
AAAGAAGGACTCCTCCGTCATTTGCGCCTGTTCAAACTTCGTGCCAAAGT
GCAGATAACTGATCTGACGGCCACGGCGAGGGTGTGCGTGGTGCTGGGCT
TGCCGGACGAGGTACTCGTGGATCTAGATGTGGTGAAGAAGCATTGGACA
GGACGAGGAGAAGAGGTCCTGGGGCTCGGACCCGACCCTCGGATTGCCTT
GCCGGGACAACATCCTTTGGGCATTCGTGCAATCGTTACACCCTCCCCTG
CCTTTCCCTTTTTTTGCTCGCAGCAGCAACAGCAGGAGCACCAGCAGCAG
CCACGCGAAGTTTATGAGGCACTGCGTTTTTTGCATGGGGTTGGGGAAGG
GCCAGACTTGGTTGAACGGTTGCCTTCGGAATGTAACCTCGATTTAACTC
ATGCCATTAATTTTCACAAAGGCTGCTACCTTGGGCAAGAGCTCACGGCC
CGCACGCAGTATAAGGGCGTGATTCGGAAGCGGGTGTTGCCTTTCTTCTT
CCTTCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCATCATCATCAGAAGCACTTCCAGTCGGTTCCTTTTCTGATTT
CCTCCCTTTTCCATCTGCTTGTCCTTTCATGGCTTCCCCACTGATTCCCT
GCAGTAGTAGCAGCAGCACCAGCAGTAAAGGTGCGAATATTGTGGATGAA
ATTACGGGGAAGACTGTTGGGTCTATCGTATCTTGTGCCAAAGGGAGCAA
TCTCGGCCTGGCACTTTTTCGACTTGAGCATATACTGGCAGGCGGACCTA
AGGTGCGTTTGGTGGTGGCTGGGAAGGGGAAGGTCGGAGGGGAGGAGAGA
GAGGAGAAGCAGATGGTGAGGGCGTTTTTGCCGCCGTGGTGGCCGACGGC
ATTGGATTTAGCAACGGGGAAGGTGCGGGCCTGA
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Synonyms
Publications