NO05G04090.1, NO05G04090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04090.1
Unique NameNO05G04090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length843
Alignment locationchr5:1051167..1052287 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1051167..1052287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04090.1 vs.
Match: EWM27987.1 (Protein of unknown function DUF2930 [Nannochloropsis gaditana])

HSP 1 Score: 349.0 bits (894), Expect = 1.400e-92
Identity = 183/285 (64.21%), Postives = 220/285 (77.19%), Query Frame = 0 
Query:   11 ITLLLVTLAAVATAFVPSRCVTPLSPPLPCGPSSSV---------VLQASNN---GGLEGVFKFIRSDALSLGVGSLALLALVTNRLYTDPLFDSQSRTDILGVFSAGGLLLNGLTLQDITVREADVIELQGPRIDEIAPDNLLTPRQATVLRWAADTYLQAFPNTPSVLIWHKNKTILRKGIMSEVG---DELEVLAIVHKALAMPPDRDGLSQPTYIPDLQVLPGKVEFMRYLPALCQAVVLQPFDNNKGLIVLGGNKRRDLTPKDLAKARVVAQKVQSSLSE 281
            I ++++    +  AFVPS C       +    +  +         +L A  N   G +E VFKFIRSDALSL VGSL LLALVTNRLYTDPLFDSQSRTDILGVFSAGGLLLNGLTLQDITVREADV++LQGP +D++   + LTPRQ T+LRWAA TYL+AFP  PSVLIWHK +T+LR GIM++      ++ VLAIV +AL+  P+ DGL QPTYIPDLQVLPGK+EFM YLP++CQAVVLQPFD+N+GLI+LGGNKRRDLTPKDLA+ARV+AQKVQ+ L+E
Sbjct:   46 IAVIVLGKLGLNAAFVPSACSNIHKASISSHMTQQLTYRSIAFETILMAEGNSQVGSMESVFKFIRSDALSLTVGSLCLLALVTNRLYTDPLFDSQSRTDILGVFSAGGLLLNGLTLQDITVREADVVQLQGPAVDDVKGFDALTPRQVTILRWAAQTYLKAFPTLPSVLIWHKGQTLLRNGIMADPARGTGDVRVLAIVQQALSSNPEADGLCQPTYIPDLQVLPGKIEFMNYLPSMCQAVVLQPFDSNQGLIILGGNKRRDLTPKDLARARVIAQKVQTCLAE 330
The following BLAST results are available for this feature:
BLAST of NO05G04090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27987.11.400e-9264.21Protein of unknown function DUF2930 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04090NO05G04090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04090.1NO05G04090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04090.1.cds1NO05G04090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04090.1.cds2NO05G04090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04090.1 ID=NO05G04090.1|Name=NO05G04090.1|organism=Nannochloropsis oceanica|type=mRNA|length=843bp
ATGACACTGACACCTTCGCTTGTAACCCGCATCACGCTGCTGCTGGTCAC
GCTTGCAGCTGTGGCCACCGCCTTCGTCCCTTCGCGATGCGTCACGCCAC
TTTCCCCCCCCCTCCCTTGCGGGCCCTCTTCAAGCGTGGTGTTGCAGGCG
AGCAACAATGGTGGGCTGGAGGGCGTTTTCAAGTTTATCCGAAGCGATGC
CCTGTCGTTGGGCGTGGGGTCCCTCGCCCTCTTGGCCCTGGTCACAAACC
GGCTGTACACCGACCCATTGTTTGATTCTCAGAGCCGCACCGATATCCTG
GGCGTATTTTCGGCCGGGGGATTGCTCTTGAACGGGCTGACCTTGCAGGA
CATTACTGTGCGTGAGGCTGATGTCATAGAGTTGCAGGGCCCACGCATAG
ACGAGATAGCGCCCGACAACCTGCTCACTCCTCGACAAGCCACGGTCCTC
CGCTGGGCCGCCGATACCTACCTGCAAGCTTTTCCAAACACCCCCTCCGT
GTTAATCTGGCACAAAAACAAGACAATACTTCGCAAAGGTATCATGTCTG
AGGTGGGTGACGAGCTGGAGGTGCTAGCGATTGTACACAAGGCTCTAGCC
ATGCCCCCGGACAGGGATGGGTTGAGCCAGCCTACCTACATCCCCGATTT
GCAGGTCTTGCCGGGTAAGGTAGAATTTATGAGGTATTTGCCTGCCTTGT
GTCAGGCGGTAGTGTTGCAGCCATTCGATAATAACAAGGGATTGATCGTG
TTAGGCGGGAATAAACGGCGGGATCTAACGCCGAAGGACCTGGCCAAAGC
GAGGGTGGTGGCACAGAAGGTGCAGAGTTCCTTGTCAGAATGA
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protein sequence of NO05G04090.1

>NO05G04090.1-protein ID=NO05G04090.1-protein|Name=NO05G04090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MTLTPSLVTRITLLLVTLAAVATAFVPSRCVTPLSPPLPCGPSSSVVLQA
SNNGGLEGVFKFIRSDALSLGVGSLALLALVTNRLYTDPLFDSQSRTDIL
GVFSAGGLLLNGLTLQDITVREADVIELQGPRIDEIAPDNLLTPRQATVL
RWAADTYLQAFPNTPSVLIWHKNKTILRKGIMSEVGDELEVLAIVHKALA
MPPDRDGLSQPTYIPDLQVLPGKVEFMRYLPALCQAVVLQPFDNNKGLIV
LGGNKRRDLTPKDLAKARVVAQKVQSSLSE*
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mRNA from alignment at chr5:1051167..1052287-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04090.1 ID=NO05G04090.1|Name=NO05G04090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1121bp|location=Sequence derived from alignment at chr5:1051167..1052287- (Nannochloropsis oceanica)
ATGACACTGACACCTTCGCTTGTAACCCGCATCACGCTGCTGCTGGTCAC
GCTTGCAGCTGTGGCCACCGCCTTCGTCCCTTCGCGATGCGTCACGCCAC
TTTCCCCCCCCCTCCCTTGCGGGCCCTCTTCAAGCGTGGTGTTGCAGGCG
AGCAACAATGGTGGGCTGGAGGGCGTTTTCAAGTTTATCCGAAGCGATGC
CCTGTCGTTGGGCGTGGGGTCCCTCGCCCTCTTGGCCCTGGTCACAAACC
GGCTGTACACCGACCCATTGTTTGATTCTCAGAGCCGCACCGATATCCTG
GGCGTATTTTCGGCCGGGGGATTGCTCTTGAACGGGCTGACCTTGCAGGT
GAGTTTGATGAAGAGAAGAGTCAGAGCTCCTAGTATGTCTCTCCCTTTCA
GGTGCCGTTCTTAACTCCTTTTGCAATGGCACAATTTCAAAGTATTTCTC
TGCAAGGTTTTGTCGCGACTGTACTTTTTTGTGCCTCGGCATACCTCGAC
TAACCTCATGAAGGCAGGCTCCCTTCCGCCGCCGTTTGCGCTGAGCAACT
GCAATTCTCAAACAAATCAAACGAAGCACTCTCACCTGCTTACCCAACCA
CCTCTTTCGTCCAAACACTCTACCAGGACATTACTGTGCGTGAGGCTGAT
GTCATAGAGTTGCAGGGCCCACGCATAGACGAGATAGCGCCCGACAACCT
GCTCACTCCTCGACAAGCCACGGTCCTCCGCTGGGCCGCCGATACCTACC
TGCAAGCTTTTCCAAACACCCCCTCCGTGTTAATCTGGCACAAAAACAAG
ACAATACTTCGCAAAGGTATCATGTCTGAGGTGGGTGACGAGCTGGAGGT
GCTAGCGATTGTACACAAGGCTCTAGCCATGCCCCCGGACAGGGATGGGT
TGAGCCAGCCTACCTACATCCCCGATTTGCAGGTCTTGCCGGGTAAGGTA
GAATTTATGAGGTATTTGCCTGCCTTGTGTCAGGCGGTAGTGTTGCAGCC
ATTCGATAATAACAAGGGATTGATCGTGTTAGGCGGGAATAAACGGCGGG
ATCTAACGCCGAAGGACCTGGCCAAAGCGAGGGTGGTGGCACAGAAGGTG
CAGAGTTCCTTGTCAGAATGA
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Coding sequence (CDS) from alignment at chr5:1051167..1052287-

>NO05G04090.1 ID=NO05G04090.1|Name=NO05G04090.1|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at chr5:1051167..1052287- (Nannochloropsis oceanica)
ATGACACTGACACCTTCGCTTGTAACCCGCATCACGCTGCTGCTGGTCAC
GCTTGCAGCTGTGGCCACCGCCTTCGTCCCTTCGCGATGCGTCACGCCAC
TTTCCCCCCCCCTCCCTTGCGGGCCCTCTTCAAGCGTGGTGTTGCAGGCG
AGCAACAATGGTGGGCTGGAGGGCGTTTTCAAGTTTATCCGAAGCGATGC
CCTGTCGTTGGGCGTGGGGTCCCTCGCCCTCTTGGCCCTGGTCACAAACC
GGCTGTACACCGACCCATTGTTTGATTCTCAGAGCCGCACCGATATCCTG
GGCGTATTTTCGGCCGGGGGATTGCTCTTGAACGGGCTGACCTTGCAGGA
CATTACTGTGCGTGAGGCTGATGTCATAGAGTTGCAGGGCCCACGCATAG
ACGAGATAGCGCCCGACAACCTGCTCACTCCTCGACAAGCCACGGTCCTC
CGCTGGGCCGCCGATACCTACCTGCAAGCTTTTCCAAACACCCCCTCCGT
GTTAATCTGGCACAAAAACAAGACAATACTTCGCAAAGGTATCATGTCTG
AGGTGGGTGACGAGCTGGAGGTGCTAGCGATTGTACACAAGGCTCTAGCC
ATGCCCCCGGACAGGGATGGGTTGAGCCAGCCTACCTACATCCCCGATTT
GCAGGTCTTGCCGGGTAAGGTAGAATTTATGAGGTATTTGCCTGCCTTGT
GTCAGGCGGTAGTGTTGCAGCCATTCGATAATAACAAGGGATTGATCGTG
TTAGGCGGGAATAAACGGCGGGATCTAACGCCGAAGGACCTGGCCAAAGC
GAGGGTGGTGGCACAGAAGGTGCAGAGTTCCTTGTCAGAATGA
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Synonyms
Publications