NO05G03610.1, NO05G03610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03610.1
Unique NameNO05G03610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1641
Alignment locationchr5:953197..954837 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:953197..954837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G03610.1 vs.
Match: EWM27998.1 (dihydrolipoamide s-acetyltransferase (e2 component of pyruvate dehydrogenase complex) [Nannochloropsis gaditana])

HSP 1 Score: 638.3 bits (1645), Expect = 2.200e-179
Identity = 377/562 (67.08%), Postives = 436/562 (77.58%), Query Frame = 0 
Query:    3 SWLGRSRRVVSVCL-ASGSRSSSTSTSSTLGKSTIITRRFPGTAACAVALRVIESRRCSSSSVLGTSTPRRIGSEFFAP------SLRRMFSSLPSHQVVGMPSLSPTMEAGTIASWAKKEGESFGPGDVLCEVETDKAVVSFDAQDEGVLAKILIQAGSGEVKVGQPIMVIVDDAKDVAAFADYTPDATPAPGAPAKTTTPAAPAAPAATASSPPFPPPPPTSSSPPASAAAGISLLGHPGRVFASPLAKTLAEEMGHDLRAIPGTGPNGRVVAADVREYV-PAVASQSTAVAAAPAPSATPAAAAAASVMNVTAPIPGKDFTDYPLSEASKAVAAKLAMAKQTVPHYYLTVDLQLGKLLELRETLNK--GE-EGSLSVNDFLLKAAALASKKVPEANASWHGEFVRQYHAVDINLMVGVGDGLLAPVVRNVDTKGLRALSGEVAGLVAGAERGELSSEALQSGTFTLVNVGMYGVKSVAPIVNLPQSCVLGVGAIENRVVPAVDPREGE-------EVYTVVPGVTVTLSCDHRVIDGAVGAQWLTAFKSLVEDPLTLLL 547
            +WLG+SRRVV +CL  +G R+ +  + S+LG+   +    P   A  V      S  C   S   ++ P+      F P      S +R+FSSLP HQVVG+P+LSPTME GTIASW KKEG+SFGPGDV+CE+ETDKAVVSFDAQDEG+LAKIL+Q  +GEV+VGQPIMV V+DA +VAAFA+++PDA  A  AP K   P +PAA     S+P  PP PP  SSPP SAAAG+SLLG+PGRVFASPLAKTLA ++GHDLRAIPGTGPNGRV+AADVREYV P VA + T    A A  A+  A A+       API G  FTDY +SEA + VAA+L +AKQTVPHYYLTVDL+L KLL LRETLNK  GE E  LSVNDFLLKAAALASKKVPEANASWHG+FVRQYHAVD+NL++GVGDGLLAPV+RNVD+KGLRALS EVAGLV GAERGELS EALQ+GTFTL+NVGMYGVK+VAPIV+LPQ+CVLGVGAIENRVVPA  P +GE       EVY VVPGVTVTLSCDHRVIDGAVGAQWL+AFKSLVE+P+TLLL
Sbjct:    2 TWLGKSRRVVHLCLFPNGLRAGTGKSRSSLGR---LLEHGP-LPASPVFPHGRRSISCGKRSNRISTFPQVSRLACFQPGAAPLSSPQRLFSSLPPHQVVGLPALSPTMEHGTIASWTKKEGDSFGPGDVICEIETDKAVVSFDAQDEGILAKILVQPSAGEVRVGQPIMVTVEDAANVAAFANFSPDA--AEPAPPKAAAP-SPAASTPAPSTPSPPPSPP--SSPPTSAAAGVSLLGYPGRVFASPLAKTLAGQLGHDLRAIPGTGPNGRVLAADVREYVPPVVAERPTETIPAEAVRASAPAHASTVEKVAGAPIHGAGFTDYRVSEAGRGVAARLTVAKQTVPHYYLTVDLELDKLLSLRETLNKELGEKEMGLSVNDFLLKAAALASKKVPEANASWHGDFVRQYHAVDVNLVLGVGDGLLAPVIRNVDSKGLRALSAEVAGLVGGAERGELSEEALQTGTFTLINVGMYGVKAVAPIVSLPQACVLGVGAIENRVVPAAAPLKGEAAGEGEGEVYRVVPGVTVTLSCDHRVIDGAVGAQWLSAFKSLVEEPMTLLL 554
The following BLAST results are available for this feature:
BLAST of NO05G03610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27998.12.200e-17967.08dihydrolipoamide s-acetyltransferase (e2 component... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03610NO05G03610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03610.1NO05G03610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03610.1.cds1NO05G03610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03610.1 ID=NO05G03610.1|Name=NO05G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp
ATGACGTCGTGGTTGGGAAGAAGCCGCCGGGTTGTCTCCGTGTGCTTGGC
GTCCGGTAGCCGGTCCAGCAGCACCAGCACCAGCTCCACTCTCGGCAAGA
GCACTATCATCACCCGACGCTTCCCCGGCACGGCCGCCTGTGCGGTGGCC
CTGCGCGTGATCGAGAGTAGAAGATGCAGCAGCAGTTCTGTCCTTGGCAC
GAGCACCCCCAGAAGGATTGGTAGCGAATTTTTCGCTCCCTCCTTGCGCC
GGATGTTTAGCTCCTTGCCGTCGCATCAGGTGGTGGGGATGCCCTCGCTG
TCGCCCACCATGGAGGCTGGCACCATCGCCTCGTGGGCCAAGAAGGAAGG
GGAAAGCTTCGGGCCGGGGGACGTGCTGTGCGAAGTTGAGACGGATAAGG
CAGTCGTGTCATTTGATGCACAAGACGAAGGAGTTCTAGCCAAGATTCTG
ATACAGGCGGGTAGTGGCGAGGTCAAGGTCGGGCAACCCATTATGGTCAT
TGTCGACGACGCAAAGGACGTGGCCGCCTTTGCCGACTACACTCCCGACG
CTACACCTGCCCCTGGCGCGCCTGCCAAGACCACGACACCTGCCGCTCCG
GCCGCTCCTGCGGCCACGGCTTCCTCCCCTCCTTTTCCTCCTCCTCCTCC
CACTTCCAGTTCCCCACCTGCCTCGGCTGCGGCGGGGATCTCCTTGCTAG
GGCATCCCGGCCGAGTATTTGCCAGCCCGCTTGCCAAGACGCTGGCAGAG
GAGATGGGCCATGATTTGAGGGCGATTCCGGGCACGGGGCCGAATGGTCG
AGTGGTTGCCGCGGACGTACGGGAATATGTCCCCGCTGTCGCCAGTCAGT
CAACAGCTGTGGCTGCAGCTCCTGCTCCTTCTGCTACTCCCGCTGCGGCT
GCCGCTGCGTCAGTGATGAATGTGACGGCACCGATACCAGGGAAGGACTT
CACAGATTATCCGCTGTCGGAGGCCAGCAAAGCGGTGGCTGCAAAGCTGG
CGATGGCGAAGCAGACGGTTCCTCATTATTATTTAACTGTTGATTTGCAG
TTAGGGAAGCTGTTGGAGTTGCGGGAGACGTTGAATAAAGGGGAGGAGGG
TTCATTGTCTGTGAATGATTTTCTGCTTAAAGCAGCGGCATTGGCGAGTA
AGAAGGTCCCAGAGGCGAATGCGAGCTGGCATGGGGAGTTTGTGCGGCAA
TACCACGCGGTCGACATCAATTTGATGGTCGGCGTGGGTGATGGCTTGCT
AGCGCCCGTTGTCCGCAACGTGGACACAAAGGGCCTGCGTGCATTATCCG
GAGAGGTCGCGGGCTTGGTGGCAGGGGCGGAGAGAGGGGAGTTGAGTAGC
GAGGCGTTGCAGTCGGGGACATTTACTCTGGTGAACGTTGGGATGTACGG
TGTGAAATCAGTGGCGCCTATCGTGAATCTTCCCCAGTCCTGTGTGTTGG
GCGTGGGGGCGATTGAGAATCGAGTTGTCCCTGCGGTTGATCCCAGAGAA
GGGGAGGAGGTGTATACGGTCGTGCCTGGGGTGACCGTGACGTTGAGCTG
CGACCATAGAGTGATCGATGGTGCGGTTGGCGCGCAATGGTTGACTGCCT
TCAAGTCCTTGGTGGAGGACCCATTGACTCTTTTGTTGTAG
back to top

protein sequence of NO05G03610.1

>NO05G03610.1-protein ID=NO05G03610.1-protein|Name=NO05G03610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MTSWLGRSRRVVSVCLASGSRSSSTSTSSTLGKSTIITRRFPGTAACAVA
LRVIESRRCSSSSVLGTSTPRRIGSEFFAPSLRRMFSSLPSHQVVGMPSL
SPTMEAGTIASWAKKEGESFGPGDVLCEVETDKAVVSFDAQDEGVLAKIL
IQAGSGEVKVGQPIMVIVDDAKDVAAFADYTPDATPAPGAPAKTTTPAAP
AAPAATASSPPFPPPPPTSSSPPASAAAGISLLGHPGRVFASPLAKTLAE
EMGHDLRAIPGTGPNGRVVAADVREYVPAVASQSTAVAAAPAPSATPAAA
AAASVMNVTAPIPGKDFTDYPLSEASKAVAAKLAMAKQTVPHYYLTVDLQ
LGKLLELRETLNKGEEGSLSVNDFLLKAAALASKKVPEANASWHGEFVRQ
YHAVDINLMVGVGDGLLAPVVRNVDTKGLRALSGEVAGLVAGAERGELSS
EALQSGTFTLVNVGMYGVKSVAPIVNLPQSCVLGVGAIENRVVPAVDPRE
GEEVYTVVPGVTVTLSCDHRVIDGAVGAQWLTAFKSLVEDPLTLLL*
back to top

mRNA from alignment at chr5:953197..954837+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03610.1 ID=NO05G03610.1|Name=NO05G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp|location=Sequence derived from alignment at chr5:953197..954837+ (Nannochloropsis oceanica)
ATGACGTCGTGGTTGGGAAGAAGCCGCCGGGTTGTCTCCGTGTGCTTGGC
GTCCGGTAGCCGGTCCAGCAGCACCAGCACCAGCTCCACTCTCGGCAAGA
GCACTATCATCACCCGACGCTTCCCCGGCACGGCCGCCTGTGCGGTGGCC
CTGCGCGTGATCGAGAGTAGAAGATGCAGCAGCAGTTCTGTCCTTGGCAC
GAGCACCCCCAGAAGGATTGGTAGCGAATTTTTCGCTCCCTCCTTGCGCC
GGATGTTTAGCTCCTTGCCGTCGCATCAGGTGGTGGGGATGCCCTCGCTG
TCGCCCACCATGGAGGCTGGCACCATCGCCTCGTGGGCCAAGAAGGAAGG
GGAAAGCTTCGGGCCGGGGGACGTGCTGTGCGAAGTTGAGACGGATAAGG
CAGTCGTGTCATTTGATGCACAAGACGAAGGAGTTCTAGCCAAGATTCTG
ATACAGGCGGGTAGTGGCGAGGTCAAGGTCGGGCAACCCATTATGGTCAT
TGTCGACGACGCAAAGGACGTGGCCGCCTTTGCCGACTACACTCCCGACG
CTACACCTGCCCCTGGCGCGCCTGCCAAGACCACGACACCTGCCGCTCCG
GCCGCTCCTGCGGCCACGGCTTCCTCCCCTCCTTTTCCTCCTCCTCCTCC
CACTTCCAGTTCCCCACCTGCCTCGGCTGCGGCGGGGATCTCCTTGCTAG
GGCATCCCGGCCGAGTATTTGCCAGCCCGCTTGCCAAGACGCTGGCAGAG
GAGATGGGCCATGATTTGAGGGCGATTCCGGGCACGGGGCCGAATGGTCG
AGTGGTTGCCGCGGACGTACGGGAATATGTCCCCGCTGTCGCCAGTCAGT
CAACAGCTGTGGCTGCAGCTCCTGCTCCTTCTGCTACTCCCGCTGCGGCT
GCCGCTGCGTCAGTGATGAATGTGACGGCACCGATACCAGGGAAGGACTT
CACAGATTATCCGCTGTCGGAGGCCAGCAAAGCGGTGGCTGCAAAGCTGG
CGATGGCGAAGCAGACGGTTCCTCATTATTATTTAACTGTTGATTTGCAG
TTAGGGAAGCTGTTGGAGTTGCGGGAGACGTTGAATAAAGGGGAGGAGGG
TTCATTGTCTGTGAATGATTTTCTGCTTAAAGCAGCGGCATTGGCGAGTA
AGAAGGTCCCAGAGGCGAATGCGAGCTGGCATGGGGAGTTTGTGCGGCAA
TACCACGCGGTCGACATCAATTTGATGGTCGGCGTGGGTGATGGCTTGCT
AGCGCCCGTTGTCCGCAACGTGGACACAAAGGGCCTGCGTGCATTATCCG
GAGAGGTCGCGGGCTTGGTGGCAGGGGCGGAGAGAGGGGAGTTGAGTAGC
GAGGCGTTGCAGTCGGGGACATTTACTCTGGTGAACGTTGGGATGTACGG
TGTGAAATCAGTGGCGCCTATCGTGAATCTTCCCCAGTCCTGTGTGTTGG
GCGTGGGGGCGATTGAGAATCGAGTTGTCCCTGCGGTTGATCCCAGAGAA
GGGGAGGAGGTGTATACGGTCGTGCCTGGGGTGACCGTGACGTTGAGCTG
CGACCATAGAGTGATCGATGGTGCGGTTGGCGCGCAATGGTTGACTGCCT
TCAAGTCCTTGGTGGAGGACCCATTGACTCTTTTGTTGTAG
back to top

Coding sequence (CDS) from alignment at chr5:953197..954837+

>NO05G03610.1 ID=NO05G03610.1|Name=NO05G03610.1|organism=Nannochloropsis oceanica|type=CDS|length=1641bp|location=Sequence derived from alignment at chr5:953197..954837+ (Nannochloropsis oceanica)
ATGACGTCGTGGTTGGGAAGAAGCCGCCGGGTTGTCTCCGTGTGCTTGGC
GTCCGGTAGCCGGTCCAGCAGCACCAGCACCAGCTCCACTCTCGGCAAGA
GCACTATCATCACCCGACGCTTCCCCGGCACGGCCGCCTGTGCGGTGGCC
CTGCGCGTGATCGAGAGTAGAAGATGCAGCAGCAGTTCTGTCCTTGGCAC
GAGCACCCCCAGAAGGATTGGTAGCGAATTTTTCGCTCCCTCCTTGCGCC
GGATGTTTAGCTCCTTGCCGTCGCATCAGGTGGTGGGGATGCCCTCGCTG
TCGCCCACCATGGAGGCTGGCACCATCGCCTCGTGGGCCAAGAAGGAAGG
GGAAAGCTTCGGGCCGGGGGACGTGCTGTGCGAAGTTGAGACGGATAAGG
CAGTCGTGTCATTTGATGCACAAGACGAAGGAGTTCTAGCCAAGATTCTG
ATACAGGCGGGTAGTGGCGAGGTCAAGGTCGGGCAACCCATTATGGTCAT
TGTCGACGACGCAAAGGACGTGGCCGCCTTTGCCGACTACACTCCCGACG
CTACACCTGCCCCTGGCGCGCCTGCCAAGACCACGACACCTGCCGCTCCG
GCCGCTCCTGCGGCCACGGCTTCCTCCCCTCCTTTTCCTCCTCCTCCTCC
CACTTCCAGTTCCCCACCTGCCTCGGCTGCGGCGGGGATCTCCTTGCTAG
GGCATCCCGGCCGAGTATTTGCCAGCCCGCTTGCCAAGACGCTGGCAGAG
GAGATGGGCCATGATTTGAGGGCGATTCCGGGCACGGGGCCGAATGGTCG
AGTGGTTGCCGCGGACGTACGGGAATATGTCCCCGCTGTCGCCAGTCAGT
CAACAGCTGTGGCTGCAGCTCCTGCTCCTTCTGCTACTCCCGCTGCGGCT
GCCGCTGCGTCAGTGATGAATGTGACGGCACCGATACCAGGGAAGGACTT
CACAGATTATCCGCTGTCGGAGGCCAGCAAAGCGGTGGCTGCAAAGCTGG
CGATGGCGAAGCAGACGGTTCCTCATTATTATTTAACTGTTGATTTGCAG
TTAGGGAAGCTGTTGGAGTTGCGGGAGACGTTGAATAAAGGGGAGGAGGG
TTCATTGTCTGTGAATGATTTTCTGCTTAAAGCAGCGGCATTGGCGAGTA
AGAAGGTCCCAGAGGCGAATGCGAGCTGGCATGGGGAGTTTGTGCGGCAA
TACCACGCGGTCGACATCAATTTGATGGTCGGCGTGGGTGATGGCTTGCT
AGCGCCCGTTGTCCGCAACGTGGACACAAAGGGCCTGCGTGCATTATCCG
GAGAGGTCGCGGGCTTGGTGGCAGGGGCGGAGAGAGGGGAGTTGAGTAGC
GAGGCGTTGCAGTCGGGGACATTTACTCTGGTGAACGTTGGGATGTACGG
TGTGAAATCAGTGGCGCCTATCGTGAATCTTCCCCAGTCCTGTGTGTTGG
GCGTGGGGGCGATTGAGAATCGAGTTGTCCCTGCGGTTGATCCCAGAGAA
GGGGAGGAGGTGTATACGGTCGTGCCTGGGGTGACCGTGACGTTGAGCTG
CGACCATAGAGTGATCGATGGTGCGGTTGGCGCGCAATGGTTGACTGCCT
TCAAGTCCTTGGTGGAGGACCCATTGACTCTTTTGTTGTAG
back to top
Synonyms
Publications