NO05G03160.1, NO05G03160.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G03160.1
Unique Name	NO05G03160.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2503
Alignment location	chr5:818811..821313 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:818811..821313 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO05G03160.1 vs.
Match: EWM28098.1 (Lipid-binding START [Nannochloropsis gaditana])

HSP 1 Score: 508.4 bits (1308), Expect = 2.100e-140
Identity = 285/440 (64.77%), Postives = 332/440 (75.45%), Query Frame = 0

Query:    1 MLMLARLLFVVVACGVLVVSRVLIVQGE-KGRGSGSAGSHVRLPMTFDGLGGAASRNENMDGPLDYDSITGKSSSSKLSYRRLRKASRAAAAPGHHYDDGLNVLDLSGGMARRTWPLQRIRMRLRSQVLHLRESWRFSNSSKLVAALISRLPQRSQRQKGASEKRSTRNLGLFAERLIRQLRRQQAGLMDATGEVLAGDGAASLDGVDSRYLSLLRSLEEEGHKALIEEGDDWHQVSEKEDTKVWKRVQAEDTYGREYPCLKLSTVLHAPPDAVIDLLVDSERVAEYNKYSKGRQDIAQVGPNTKIVRNRTLPPLQKRAHEFCTIMHVIRRPDGSQVMLTKYTDHPEVPRSSAFARSEIILGVTEVKPHPTDPDRAQLTTVSHVKSAGVPPFVAEKFSVRGVVDFADSLRKALH---SGKQQGQKDQGRQDNRFGELLDQ 437
            MLML RLL VVVACGVLVVSRVLIVQG+ K +   +AGS+  LP+TF GL    S  E       +D + G  SS K+SYRRLRKA+RAAAA      +  +    S G+ RR  P Q +R  L+SQV  +R + + +  S  VA L+SR P R QR++  SE R   +L  FAERL+RQLRRQQA L+     +L GD AASL+GVD RYLSLL+SLEEEGH+AL +EG  WH VS+KEDTK+W+R  AED YGREYPCLKLSTVLHA P+AV+DLLVDSERV EYNKYSKGR D+A+VGP+TKIV NRTLPPLQK+AHEFCTIMHV+RRPDGSQVMLTK+TDHPEVPRSS FARSEIILGVTEV+PHPTDP+RA LTT+SHVKSAG+PPF+AEKFSVRGVVDFA+SLRKALH    G  Q  K +  Q  R  E  DQ
Sbjct:    1 MLMLVRLLLVVVACGVLVVSRVLIVQGDTKAKAPSTAGSYTHLPLTFGGLDTGGSSEE---ADRRHDLVPGLGSS-KVSYRRLRKATRAAAADSDFSYERKS--SQSDGVTRRLRPFQAVRTTLQSQVRRVRNTLQSTRVSSAVAGLLSRFPPRLQRRR-TSESRPAGHLSSFAERLLRQLRRQQAHLVQDAEAMLNGDAAASLEGVDPRYLSLLQSLEEEGHQALGDEGGGWHPVSDKEDTKIWRRNLAEDAYGREYPCLKLSTVLHASPEAVMDLLVDSERVGEYNKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHPEVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSAGIPPFIAEKFSVRGVVDFAESLRKALHLERKGPVQEAKAENFQKRRQEEKQDQ 433

The following BLAST results are available for this feature:

BLAST of NO05G03160.1 vs.

BLAST of NO05G03160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28098.1	2.100e-140	64.77	Lipid-binding START [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G03160	NO05G03160	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G03160.1	NO05G03160.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G03160.1.cds1	NO05G03160.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:818811..821313-
coding sequence from alignment at chr5:818811..821313-

mRNA sequence

>NO05G03160.1 ID=NO05G03160.1|Name=NO05G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2503bp
CATCCTTTGGTTATAATGTAATAATTCGTGCAGGAAAATAGGGTCAGGAT
TAGGGTCATCACATCCGACATAAGAAATGGATGTCTAGCTTCGCCATGTG
CAGGAAGAGGCCTAATGGATGACGACTGCTGCCGGTCTTTTTTTTGTTGT
TTGTTGATCACTGCTGGTCATCAATTCGAACTCCCCGTTCGTAACGTTAG
CGTCTTGGCACTTTCCTGAGCTCTGAAGTTGTGTCAGCGTAGTTTTTGTT
GCTTCTCCCGATGTCTTTTTAAGACCCAATTTCGGATCCTTTCATTCCTC
TTCCCATCATACAGGATAAGCCAAGAGCCAGCAAAGGGACACGACGAAGG
GTTGCTTGGGCGGCGGTCGGTCGTGTGTGCTAGGGAGGCCCAGTCAGACA
CTTGCATCGGTAAGATTCGGGGCTGATTCTTGTCCGAGCAAAAGTTACGC
TGGCCCACGACCAGCCCTTTCTTTAGAGCCCACAATCTGCGGATCAAGTA
GTGCGATAGGGTTACGACTAAGCCGGGCCACAATCCCTCACTTCTCCCCC
CTTGCTTTCGTTGAAACATTCCACGCGAGCTACTTTTCTCCTTGAGCACC
TCCATTCCCCGCCTACACCACCGTCTCTGCAAATGCTCATGCTGGCACGT
CTATTGTTTGTCGTAGTAGCGTGCGGGGTGTTGGTCGTGTCTCGGGTCTT
GATCGTGCAAGGCGAGAAGGGCAGAGGCTCAGGCTCGGCGGGGAGCCATG
TCCGCTTACCTATGACTTTCGACGGCCTAGGTGGGGCAGCCTCAAGAAAT
GAGAACATGGACGGACCTCTTGACTATGACAGCATCACAGGGAAGAGTAG
CAGCAGCAAGCTGAGCTACCGCCGGCTTCGGAAGGCTTCCAGAGCTGCCG
CGGCGCCGGGACACCACTACGACGACGGCCTCAACGTGCTCGACTTGAGC
GGGGGCATGGCCCGTCGCACGTGGCCTTTGCAGAGGATCCGCATGCGGTT
ACGTTCTCAAGTGCTTCATTTAAGGGAATCCTGGCGATTTTCCAATTCAT
CCAAACTGGTTGCAGCGCTGATATCTCGCTTGCCCCAACGGTCGCAACGG
CAGAAAGGAGCGTCGGAAAAGAGATCTACGAGAAATCTGGGCTTGTTTGC
CGAGAGATTGATTCGGCAGTTGAGACGGCAGCAGGCAGGGCTAATGGATG
CGACTGGAGAAGTTTTGGCTGGCGATGGTGCGGCGTCTCTGGATGGGGTA
GACTCGCGGTACCTGTCGTTGCTTCGTTCTTTAGAGGAAGAGGGACACAA
AGCCTTGATTGAGGAGGGGGATGACTGGCATCAGGTCTCAGAGAAGGAGG
ACACTAAGGTGTGGAAGCGGGTGCAGGCAGAGGATACATATGGGAGGGAA
TACCCATGCCTGAAGCTGTCGACGGTCTTGCACGCGCCGCCGGACGCGGT
GATAGATTTGTTGGTCGACTCGGAGCGTGTGGCCGAGTACAATAAATACA
GCAAAGGCCGGCAAGATATCGCACAAGTAGGGCCCAACACCAAAATTGTC
CGAAATCGTACCCTGCCTCCGTTACAGAAACGCGCGCATGAATTTTGTAC
GATCATGCACGTTATTCGCCGGCCCGATGGTAGTCAGGTTATGCTGACCA
AATACACCGATCACCCGGAAGTACCACGCTCCTCCGCCTTCGCTCGATCG
GAGATTATTTTGGGAGTGACCGAGGTAAAGCCCCATCCGACGGACCCCGA
CCGCGCGCAACTCACGACTGTGAGTCACGTCAAGTCGGCAGGAGTTCCCC
CGTTTGTTGCCGAAAAATTTAGTGTGAGAGGGGTGGTGGATTTTGCGGAC
AGTCTGAGGAAGGCCTTGCATTCAGGGAAGCAGCAGGGGCAGAAAGACCA
AGGGCGGCAGGATAATAGGTTTGGGGAACTGCTGGATCAATGACAACAGC
ACCAGCAACAACAGCACCAGCAACAACAGCCCCAACTCGCCTAAAAGTTG
GGAAATGATCTGATGATGATAACTGGTGTGAGCTTTTTTGGTGCAGATAT
GTAATTTATTTTACTTTTGTACCACGTGCTGTGTGTGGGTATGTCGGAGA
CGAGTTTTATTGGGTTCGTGCGCATGACAAACGACACACCCCGAGCACTG
TCATCAATACAACCACTATCACCATCATCAGGACTTGGTGTGTGGGTACT
GCGGCCGAAAAATTGTACTTATGCATGTAAAATAGGAAAGCAGGAAAGAG
AACGAGAGCAAGCTTGTCTCTGCCTGAGTGAAAAACTATCTGGGAAATTA
AGGAACATTGCAATTTAGTGGACGGGCAAATGAGCAAATCAGCATTGAAT
GAAAAGTAGTAGCTGCAGTGGTGGTAGTAACGGCCAAAACAGAGGGACAA
AAATCCCACGATAACATAATCCTCCCCAGCCATGCATTTTGGGGGAGGGA
AAAGAATGATGGAAACCCGAAAATTAGACGATGAGAAAAGTCAGCAAGCA
TGT

protein sequence of NO05G03160.1

>NO05G03160.1-protein ID=NO05G03160.1-protein|Name=NO05G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MLMLARLLFVVVACGVLVVSRVLIVQGEKGRGSGSAGSHVRLPMTFDGLG
GAASRNENMDGPLDYDSITGKSSSSKLSYRRLRKASRAAAAPGHHYDDGL
NVLDLSGGMARRTWPLQRIRMRLRSQVLHLRESWRFSNSSKLVAALISRL
PQRSQRQKGASEKRSTRNLGLFAERLIRQLRRQQAGLMDATGEVLAGDGA
ASLDGVDSRYLSLLRSLEEEGHKALIEEGDDWHQVSEKEDTKVWKRVQAE
DTYGREYPCLKLSTVLHAPPDAVIDLLVDSERVAEYNKYSKGRQDIAQVG
PNTKIVRNRTLPPLQKRAHEFCTIMHVIRRPDGSQVMLTKYTDHPEVPRS
SAFARSEIILGVTEVKPHPTDPDRAQLTTVSHVKSAGVPPFVAEKFSVRG
VVDFADSLRKALHSGKQQGQKDQGRQDNRFGELLDQ*

mRNA from alignment at chr5:818811..821313-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G03160.1 ID=NO05G03160.1|Name=NO05G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2503bp|location=Sequence derived from alignment at chr5:818811..821313- (Nannochloropsis oceanica)
CATCCTTTGGTTATAATGTAATAATTCGTGCAGGAAAATAGGGTCAGGAT
TAGGGTCATCACATCCGACATAAGAAATGGATGTCTAGCTTCGCCATGTG
CAGGAAGAGGCCTAATGGATGACGACTGCTGCCGGTCTTTTTTTTGTTGT
TTGTTGATCACTGCTGGTCATCAATTCGAACTCCCCGTTCGTAACGTTAG
CGTCTTGGCACTTTCCTGAGCTCTGAAGTTGTGTCAGCGTAGTTTTTGTT
GCTTCTCCCGATGTCTTTTTAAGACCCAATTTCGGATCCTTTCATTCCTC
TTCCCATCATACAGGATAAGCCAAGAGCCAGCAAAGGGACACGACGAAGG
GTTGCTTGGGCGGCGGTCGGTCGTGTGTGCTAGGGAGGCCCAGTCAGACA
CTTGCATCGGTAAGATTCGGGGCTGATTCTTGTCCGAGCAAAAGTTACGC
TGGCCCACGACCAGCCCTTTCTTTAGAGCCCACAATCTGCGGATCAAGTA
GTGCGATAGGGTTACGACTAAGCCGGGCCACAATCCCTCACTTCTCCCCC
CTTGCTTTCGTTGAAACATTCCACGCGAGCTACTTTTCTCCTTGAGCACC
TCCATTCCCCGCCTACACCACCGTCTCTGCAAATGCTCATGCTGGCACGT
CTATTGTTTGTCGTAGTAGCGTGCGGGGTGTTGGTCGTGTCTCGGGTCTT
GATCGTGCAAGGCGAGAAGGGCAGAGGCTCAGGCTCGGCGGGGAGCCATG
TCCGCTTACCTATGACTTTCGACGGCCTAGGTGGGGCAGCCTCAAGAAAT
GAGAACATGGACGGACCTCTTGACTATGACAGCATCACAGGGAAGAGTAG
CAGCAGCAAGCTGAGCTACCGCCGGCTTCGGAAGGCTTCCAGAGCTGCCG
CGGCGCCGGGACACCACTACGACGACGGCCTCAACGTGCTCGACTTGAGC
GGGGGCATGGCCCGTCGCACGTGGCCTTTGCAGAGGATCCGCATGCGGTT
ACGTTCTCAAGTGCTTCATTTAAGGGAATCCTGGCGATTTTCCAATTCAT
CCAAACTGGTTGCAGCGCTGATATCTCGCTTGCCCCAACGGTCGCAACGG
CAGAAAGGAGCGTCGGAAAAGAGATCTACGAGAAATCTGGGCTTGTTTGC
CGAGAGATTGATTCGGCAGTTGAGACGGCAGCAGGCAGGGCTAATGGATG
CGACTGGAGAAGTTTTGGCTGGCGATGGTGCGGCGTCTCTGGATGGGGTA
GACTCGCGGTACCTGTCGTTGCTTCGTTCTTTAGAGGAAGAGGGACACAA
AGCCTTGATTGAGGAGGGGGATGACTGGCATCAGGTCTCAGAGAAGGAGG
ACACTAAGGTGTGGAAGCGGGTGCAGGCAGAGGATACATATGGGAGGGAA
TACCCATGCCTGAAGCTGTCGACGGTCTTGCACGCGCCGCCGGACGCGGT
GATAGATTTGTTGGTCGACTCGGAGCGTGTGGCCGAGTACAATAAATACA
GCAAAGGCCGGCAAGATATCGCACAAGTAGGGCCCAACACCAAAATTGTC
CGAAATCGTACCCTGCCTCCGTTACAGAAACGCGCGCATGAATTTTGTAC
GATCATGCACGTTATTCGCCGGCCCGATGGTAGTCAGGTTATGCTGACCA
AATACACCGATCACCCGGAAGTACCACGCTCCTCCGCCTTCGCTCGATCG
GAGATTATTTTGGGAGTGACCGAGGTAAAGCCCCATCCGACGGACCCCGA
CCGCGCGCAACTCACGACTGTGAGTCACGTCAAGTCGGCAGGAGTTCCCC
CGTTTGTTGCCGAAAAATTTAGTGTGAGAGGGGTGGTGGATTTTGCGGAC
AGTCTGAGGAAGGCCTTGCATTCAGGGAAGCAGCAGGGGCAGAAAGACCA
AGGGCGGCAGGATAATAGGTTTGGGGAACTGCTGGATCAATGACAACAGC
ACCAGCAACAACAGCACCAGCAACAACAGCCCCAACTCGCCTAAAAGTTG
GGAAATGATCTGATGATGATAACTGGTGTGAGCTTTTTTGGTGCAGATAT
GTAATTTATTTTACTTTTGTACCACGTGCTGTGTGTGGGTATGTCGGAGA
CGAGTTTTATTGGGTTCGTGCGCATGACAAACGACACACCCCGAGCACTG
TCATCAATACAACCACTATCACCATCATCAGGACTTGGTGTGTGGGTACT
GCGGCCGAAAAATTGTACTTATGCATGTAAAATAGGAAAGCAGGAAAGAG
AACGAGAGCAAGCTTGTCTCTGCCTGAGTGAAAAACTATCTGGGAAATTA
AGGAACATTGCAATTTAGTGGACGGGCAAATGAGCAAATCAGCATTGAAT
GAAAAGTAGTAGCTGCAGTGGTGGTAGTAACGGCCAAAACAGAGGGACAA
AAATCCCACGATAACATAATCCTCCCCAGCCATGCATTTTGGGGGAGGGA
AAAGAATGATGGAAACCCGAAAATTAGACGATGAGAAAAGTCAGCAAGCA
TGT

Coding sequence (CDS) from alignment at chr5:818811..821313-

>NO05G03160.1 ID=NO05G03160.1|Name=NO05G03160.1|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at chr5:818811..821313- (Nannochloropsis oceanica)
ATGCTCATGCTGGCACGTCTATTGTTTGTCGTAGTAGCGTGCGGGGTGTT
GGTCGTGTCTCGGGTCTTGATCGTGCAAGGCGAGAAGGGCAGAGGCTCAG
GCTCGGCGGGGAGCCATGTCCGCTTACCTATGACTTTCGACGGCCTAGGT
GGGGCAGCCTCAAGAAATGAGAACATGGACGGACCTCTTGACTATGACAG
CATCACAGGGAAGAGTAGCAGCAGCAAGCTGAGCTACCGCCGGCTTCGGA
AGGCTTCCAGAGCTGCCGCGGCGCCGGGACACCACTACGACGACGGCCTC
AACGTGCTCGACTTGAGCGGGGGCATGGCCCGTCGCACGTGGCCTTTGCA
GAGGATCCGCATGCGGTTACGTTCTCAAGTGCTTCATTTAAGGGAATCCT
GGCGATTTTCCAATTCATCCAAACTGGTTGCAGCGCTGATATCTCGCTTG
CCCCAACGGTCGCAACGGCAGAAAGGAGCGTCGGAAAAGAGATCTACGAG
AAATCTGGGCTTGTTTGCCGAGAGATTGATTCGGCAGTTGAGACGGCAGC
AGGCAGGGCTAATGGATGCGACTGGAGAAGTTTTGGCTGGCGATGGTGCG
GCGTCTCTGGATGGGGTAGACTCGCGGTACCTGTCGTTGCTTCGTTCTTT
AGAGGAAGAGGGACACAAAGCCTTGATTGAGGAGGGGGATGACTGGCATC
AGGTCTCAGAGAAGGAGGACACTAAGGTGTGGAAGCGGGTGCAGGCAGAG
GATACATATGGGAGGGAATACCCATGCCTGAAGCTGTCGACGGTCTTGCA
CGCGCCGCCGGACGCGGTGATAGATTTGTTGGTCGACTCGGAGCGTGTGG
CCGAGTACAATAAATACAGCAAAGGCCGGCAAGATATCGCACAAGTAGGG
CCCAACACCAAAATTGTCCGAAATCGTACCCTGCCTCCGTTACAGAAACG
CGCGCATGAATTTTGTACGATCATGCACGTTATTCGCCGGCCCGATGGTA
GTCAGGTTATGCTGACCAAATACACCGATCACCCGGAAGTACCACGCTCC
TCCGCCTTCGCTCGATCGGAGATTATTTTGGGAGTGACCGAGGTAAAGCC
CCATCCGACGGACCCCGACCGCGCGCAACTCACGACTGTGAGTCACGTCA
AGTCGGCAGGAGTTCCCCCGTTTGTTGCCGAAAAATTTAGTGTGAGAGGG
GTGGTGGATTTTGCGGACAGTCTGAGGAAGGCCTTGCATTCAGGGAAGCA
GCAGGGGCAGAAAGACCAAGGGCGGCAGGATAATAGGTTTGGGGAACTGC
TGGATCAATGA

Synonyms

Publications