NO05G02120.1, NO05G02120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02120.1
Unique NameNO05G02120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1942
Alignment locationchr5:570489..572670 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:570489..572670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G02120.1 vs.
Match: EWM28349.1 (threonine synthase [Nannochloropsis gaditana])

HSP 1 Score: 301.2 bits (770), Expect = 4.100e-78
Identity = 192/301 (63.79%), Postives = 216/301 (71.76%), Query Frame = 0 
Query:    1 MRYISTR---GESSSSSSRLTFREAVLAGWAPDGGMLLPERIPQVTPAMLEEWRGLSYPQLVTRLLALFVTDDGDEDDGKTEEEV---PLEEIVDASFASFATPEVVTFKALPWPSSSSSSSSSSSSSSSSSSSCSSSPS-----SAPSLYIAELFHGPSLAFKDLGMQVLAHVLNFYLSKQHQKMTFLVGTSGDTGPSAAAAVKGKENMRVIVLYPLGRVSPLQEAQMLAAHEGGGGGGGGGRKKEG----KKRG-----NVRVVAVEGTSDDLDEPIAELFQDKDYR--------SHHC 274
            MRYISTR     SS SS R +FREAVLAGWAPDGGM LPERIP V+  +LE WRGL+YP+LVT+LLALF+ DDGD +D     EV   PL +IVDASFASFA PEVV +KALPWP  SSSS+++SSS+S   S C   PS       PSLYIAELFHGPSLAFKDLGMQVL ++L  YL ++ ++MTFLVGTSGDTGPSAAAAV+GK  MR++VLYPLGRVS  QEAQMLA H   GG GG G K  G     K G     NVRVVAVEG+SDDLD PIA LF D  YR        SH C
Sbjct:    1 MRYISTRYDPSSSSPSSRRYSFREAVLAGWAPDGGMFLPERIPHVSRGVLESWRGLTYPELVTKLLALFM-DDGDAEDATQNAEVDKVPLRKIVDASFASFAVPEVVRWKALPWPYLSSSSTTASSSASLPLS-CHPLPSFLEKQEPPSLYIAELFHGPSLAFKDLGMQVLTNLLEHYLLQEGRRMTFLVGTSGDTGPSAAAAVQGKVAMRLVVLYPLGRVSTFQEAQMLATH---GGVGGSGEKASGAAAEAKAGTLGTPNVRVVAVEGSSDDLDVPIASLFGDPAYRCGWFRDPPSHDC 296
The following BLAST results are available for this feature:
BLAST of NO05G02120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28349.14.100e-7863.79threonine synthase [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02120NO05G02120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02120.1NO05G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02120.1.cds1NO05G02120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02120.1.cds2NO05G02120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02120.1 ID=NO05G02120.1|Name=NO05G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1942bp
ATGCGGTACATTAGCACCCGAGGAGAATCTTCCTCCTCTTCGTCGCGCCT
CACATTTCGTGAAGCCGTGCTAGCAGGATGGGCTCCGGATGGAGGCATGC
TCCTACCAGAGCGCATCCCGCAGGTGACGCCTGCGATGCTGGAAGAATGG
AGAGGCCTCTCATATCCCCAATTAGTCACCAGGCTCTTGGCTTTGTTTGT
GACGGACGACGGGGACGAGGACGACGGGAAGACCGAAGAGGAAGTGCCAT
TGGAAGAGATTGTGGACGCCAGCTTTGCCTCCTTTGCTACGCCCGAGGTG
GTGACATTCAAGGCCTTGCCGTGGCCTTCGTCCTCGTCGTCGTCCTCCTC
CTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTGCTCCTCCTCCCCCT
CCTCTGCTCCCTCCCTCTATATCGCCGAATTGTTCCACGGGCCCTCCTTG
GCATTCAAAGACTTAGGCATGCAAGTCTTAGCTCATGTCCTCAACTTCTA
CCTCTCCAAGCAACACCAAAAAATGACCTTTCTAGTTGGCACATCAGGAG
ACACGGGGCCTTCAGCAGCAGCGGCAGTTAAGGGCAAAGAGAACATGAGG
GTGATAGTATTATACCCCCTCGGGAGGGTCAGTCCCTTGCAGGAAGCTCA
GATGCTGGCCGCGCATGAGGGAGGGGGAGGGGGAGGGGGAGGGGGGAGGA
AGAAGGAAGGGAAGAAGAGGGGGAACGTGCGGGTGGTGGCAGTGGAGGGG
ACAAGCGATGATCTGGACGAACCTATCGCCGAATTGTTTCAGGATAAAGA
TTATAGGTCCCACCACTGCCTAGGCAGTCTCAACAGTGTCAACATCGTGC
GTCTCCTGGTTCAAATCTTTCACTATTTTTATGCTTACCTCCACCTCATT
CCCCCCGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGT
AGGGTCAGTACCTGCTTCCCCCTTGCCACTCCTCTCGTTTGTTGTGCCTA
CGGGCGCGGCAGGACATAGGCACGCCCGTTGAAGTGATCGTCCTCTCATT
CGCTGCTCGCCCATGGCGCATGATACAAAAATCGGCTTGAGGGAGGCTGC
TCTTGAAAACATCCTTGTGTGAAGTTTTGGATGAGGAATTTTCCCCTTAC
TTTGTTCCTACTTTGTCTGTCTGTGGAGACTCTTTGGTTGGTTCTCGAGG
AGGTCTGCAGGCACTCTTAGCTTTGATTCAATAGCTCGCTCTTACCCAGC
TATTTCGAGGGTATTTCGTGTTCTCCGGGGCATGCTGTCGCCTTGACCAT
AATTGAATGCCTTGAATTTTATTCTACCCATCTCCATCGTAGCATTAGGC
GGCACAACAATAACCATCGACATTATTATTATGTCCTCCAAGGATACCAA
GCTTTGTCAGAATCAGTATTGCCCACGCCCATGGGTTAGAGGCCTAGCCT
ATGGGAGGGAGGGAAGCGAGGAGGATTTGGAGACATGTGAGAAAGAACGA
TGTTGATGAGATGAATTAATAAGAATGAGAAAATGACAAGAGAGAGAGAC
CTGCAAGCACAAAAAAGAGGATATAAAAATGATTGTAAAGAGAAGAAGGA
AGAAGAAAAAGAAGAAGAAAGAAAAGAGAGGAAAACGAGGAGGAGGAAGA
GGAGGAGATTGAGGAGAAGTGTGAAGAAGAGTATCTTAACACGATGACGA
CCGCTTCATCAACGGCAGCAACGACAACAACGAGAAAAAGAAATAGAACA
AAGATGACGGGTAGAAGAGAATATAAAAGTAGAAACAGCAGGGGGAGAAG
AGGAAATAGAGGAAGAAAATAAAGCAGGAGTCGAAAAGGAACAAGAAAAA
GGAGAACAAGGAGATCTTTTGATCCTATCGACACCAAAGCACATCATGCC
CCGACGCATGGAATTTTTTTATCTTGTATTTTTTTGGCACCG
back to top

protein sequence of NO05G02120.1

>NO05G02120.1-protein ID=NO05G02120.1-protein|Name=NO05G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=344bp
MRYISTRGESSSSSSRLTFREAVLAGWAPDGGMLLPERIPQVTPAMLEEW
RGLSYPQLVTRLLALFVTDDGDEDDGKTEEEVPLEEIVDASFASFATPEV
VTFKALPWPSSSSSSSSSSSSSSSSSSSCSSSPSSAPSLYIAELFHGPSL
AFKDLGMQVLAHVLNFYLSKQHQKMTFLVGTSGDTGPSAAAAVKGKENMR
VIVLYPLGRVSPLQEAQMLAAHEGGGGGGGGGRKKEGKKRGNVRVVAVEG
TSDDLDEPIAELFQDKDYRSHHCLGSLNSVNIVRLLVQIFHYFYAYLHLI
PPEEGGREGGREGGRKVGSVPASPLPLLSFVVPTGAAGHRHAR*
back to top

mRNA from alignment at chr5:570489..572670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02120.1 ID=NO05G02120.1|Name=NO05G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp|location=Sequence derived from alignment at chr5:570489..572670- (Nannochloropsis oceanica)
ATGCGGTACATTAGCACCCGAGGAGAATCTTCCTCCTCTTCGTCGCGCCT
CACATTTCGTGAAGCCGTGCTAGCAGGATGGGCTCCGGATGGAGGCATGC
TCCTACCAGAGCGCATCCCGCAGGTGACGCCTGCGATGCTGGAAGAATGG
AGAGGCCTCTCATATCCCCAATTAGTCACCAGGCTCTTGGCTTTGTTTGT
GACGGACGACGGGGACGAGGACGACGGGAAGACCGAAGAGGAAGTGCCAT
TGGAAGAGATTGTGGACGCCAGCTTTGCCTCCTTTGCTACGCCCGAGGTG
GTGACATTCAAGGCCTTGCCGTGGCCTTCGTCCTCGTCGTCGTCCTCCTC
CTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTGCTCCTCCTCCCCCT
CCTCTGCTCCCTCCCTCTATATCGCCGAATTGTTCCACGGGCCCTCCTTG
GCATTCAAAGACTTAGGCATGCAAGTCTTAGCTCATGTCCTCAACTTCTA
CCTCTCCAAGCAACACCAAAAAATGACCTTTCTAGTTGGCACATCAGGAG
ACACGGGGCCTTCAGCAGCAGCGGCAGTTAAGGGCAAAGAGAACATGAGG
GTGATAGTATTATACCCCCTCGGGAGGGTCAGTCCCTTGCAGGAAGCTCA
GATGCTGGCCGCGCATGAGGGAGGGGGAGGGGGAGGGGGAGGGGGGAGGA
AGAAGGAAGGGAAGAAGAGGGGGAACGTGCGGGTGGTGGCAGTGGAGGGG
ACAAGCGATGATCTGGACGAACCTATCGCCGAATTGTTTCAGGATAAAGA
TTATAGGTATGGCCTGTCTGCTTGTCTTTTCCTCCCTCCCTCCTTCCCTC
CCTTCCTCGCTCCTTCCCTCGCTCTCTACGCGCTTGACAGCGCGTGCTAT
TCTCTCCCTCGATCCCTCAATCCCTGCCTCCTTCCCTTAGCATTTGTGAA
AACAGGTCTACCTACCCACACATGTCGCTGCTCACTTAACTAACCCCTCG
TTCCCTCCCTCCCTCCCTCCGTCCTTCTCTCCCTCCCTCCCTTCAGGTCC
CACCACTGCCTAGGCAGTCTCAACAGTGTCAACATCGTGCGTCTCCTGGT
TCAAATCTTTCACTATTTTTATGCTTACCTCCACCTCATTCCCCCCGAGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGTAGGGTCAGTA
CCTGCTTCCCCCTTGCCACTCCTCTCGTTTGTTGTGCCTACGGGCGCGGC
AGGACATAGGCACGCCCGTTGAAGTGATCGTCCTCTCATTCGCTGCTCGC
CCATGGCGCATGATACAAAAATCGGCTTGAGGGAGGCTGCTCTTGAAAAC
ATCCTTGTGTGAAGTTTTGGATGAGGAATTTTCCCCTTACTTTGTTCCTA
CTTTGTCTGTCTGTGGAGACTCTTTGGTTGGTTCTCGAGGAGGTCTGCAG
GCACTCTTAGCTTTGATTCAATAGCTCGCTCTTACCCAGCTATTTCGAGG
GTATTTCGTGTTCTCCGGGGCATGCTGTCGCCTTGACCATAATTGAATGC
CTTGAATTTTATTCTACCCATCTCCATCGTAGCATTAGGCGGCACAACAA
TAACCATCGACATTATTATTATGTCCTCCAAGGATACCAAGCTTTGTCAG
AATCAGTATTGCCCACGCCCATGGGTTAGAGGCCTAGCCTATGGGAGGGA
GGGAAGCGAGGAGGATTTGGAGACATGTGAGAAAGAACGATGTTGATGAG
ATGAATTAATAAGAATGAGAAAATGACAAGAGAGAGAGACCTGCAAGCAC
AAAAAAGAGGATATAAAAATGATTGTAAAGAGAAGAAGGAAGAAGAAAAA
GAAGAAGAAAGAAAAGAGAGGAAAACGAGGAGGAGGAAGAGGAGGAGATT
GAGGAGAAGTGTGAAGAAGAGTATCTTAACACGATGACGACCGCTTCATC
AACGGCAGCAACGACAACAACGAGAAAAAGAAATAGAACAAAGATGACGG
GTAGAAGAGAATATAAAAGTAGAAACAGCAGGGGGAGAAGAGGAAATAGA
GGAAGAAAATAAAGCAGGAGTCGAAAAGGAACAAGAAAAAGGAGAACAAG
GAGATCTTTTGATCCTATCGACACCAAAGCACATCATGCCCCGACGCATG
GAATTTTTTTATCTTGTATTTTTTTGGCACCG
back to top

Coding sequence (CDS) from alignment at chr5:570489..572670-

>NO05G02120.1 ID=NO05G02120.1|Name=NO05G02120.1|organism=Nannochloropsis oceanica|type=CDS|length=1032bp|location=Sequence derived from alignment at chr5:570489..572670- (Nannochloropsis oceanica)
ATGCGGTACATTAGCACCCGAGGAGAATCTTCCTCCTCTTCGTCGCGCCT
CACATTTCGTGAAGCCGTGCTAGCAGGATGGGCTCCGGATGGAGGCATGC
TCCTACCAGAGCGCATCCCGCAGGTGACGCCTGCGATGCTGGAAGAATGG
AGAGGCCTCTCATATCCCCAATTAGTCACCAGGCTCTTGGCTTTGTTTGT
GACGGACGACGGGGACGAGGACGACGGGAAGACCGAAGAGGAAGTGCCAT
TGGAAGAGATTGTGGACGCCAGCTTTGCCTCCTTTGCTACGCCCGAGGTG
GTGACATTCAAGGCCTTGCCGTGGCCTTCGTCCTCGTCGTCGTCCTCCTC
CTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTGCTCCTCCTCCCCCT
CCTCTGCTCCCTCCCTCTATATCGCCGAATTGTTCCACGGGCCCTCCTTG
GCATTCAAAGACTTAGGCATGCAAGTCTTAGCTCATGTCCTCAACTTCTA
CCTCTCCAAGCAACACCAAAAAATGACCTTTCTAGTTGGCACATCAGGAG
ACACGGGGCCTTCAGCAGCAGCGGCAGTTAAGGGCAAAGAGAACATGAGG
GTGATAGTATTATACCCCCTCGGGAGGGTCAGTCCCTTGCAGGAAGCTCA
GATGCTGGCCGCGCATGAGGGAGGGGGAGGGGGAGGGGGAGGGGGGAGGA
AGAAGGAAGGGAAGAAGAGGGGGAACGTGCGGGTGGTGGCAGTGGAGGGG
ACAAGCGATGATCTGGACGAACCTATCGCCGAATTGTTTCAGGATAAAGA
TTATAGGTCCCACCACTGCCTAGGCAGTCTCAACAGTGTCAACATCGTGC
GTCTCCTGGTTCAAATCTTTCACTATTTTTATGCTTACCTCCACCTCATT
CCCCCCGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGT
AGGGTCAGTACCTGCTTCCCCCTTGCCACTCCTCTCGTTTGTTGTGCCTA
CGGGCGCGGCAGGACATAGGCACGCCCGTTGA
back to top
Synonyms
Publications