NO05G01930.2, NO05G01930.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01930.2
Unique NameNO05G01930.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2745
Alignment locationchr5:526346..529337 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:526346..529337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01930.2 vs.
Match: WP_104983533.1 (delta(12)-fatty acid dehydrogenase [Sorangium cellulosum])

HSP 1 Score: 119.4 bits (298), Expect = 1.500e-23
Identity = 62/162 (38.27%), Postives = 85/162 (52.47%), Query Frame = 0 
Query:   37 QISDHWSAGHGPEWVQPFFWCTQTLHYYWRYFRDISSRPFDEAAEAVLVTLVILLSVSFLLSKGCGYQLWIFVGLPRMITDPCLAYSFDYAPHHPHEASRAEDVYGCTAMIGGLLSPDDGVDLTVPLIYQNYHNIHHLYPTIPFYKYPLMWRNHRKILLELG 199
            Q  DHWS G GP W+ P  W TQ L+YY+ + R   ++   E  E V    V L  V+     G G  + ++   P  +    LA++FDY PH+PH  + A+D Y  T  +       D     V L  QNYH IHHLYP +PFY+Y  +W+  R+ LL+LG
Sbjct:  158 QDPDHWS-GRGPWWLLPLRWATQDLYYYYLFLRSYRAQKRGERIETVATMAVFLGLVALAFGLGYGEVVLLYWIAPARVAIFFLAFAFDYLPHYPHGVTAAQDRYRATRAV-------DSAIFNVLLFGQNYHLIHHLYPAVPFYRYRAVWKYQREELLKLG 311
The following BLAST results are available for this feature:
BLAST of NO05G01930.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_104983533.11.500e-2338.27delta(12)-fatty acid dehydrogenase [Sorangium cell... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01930NO05G01930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01930.2NO05G01930.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01930.2.cds1NO05G01930.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01930.2 ID=NO05G01930.2|Name=NO05G01930.2|organism=Nannochloropsis oceanica|type=mRNA|length=2745bp
ACCGACATCACATCGATCAACTCTGCCCTCCCGTACATGTATTCGCAAGG
TCAACCCTTGGGGCCAGCGCCACTTAAGGCAAGATCTGATGCCTTGTGCG
TCTGTTGGGATATCTGGTGGCATCTTTTGTGCCCCCCAAGCTTTTTGCAC
AGGACGCCAAGACTTCCACTGCCACTATGCGTCAAGACCATTACACTTCA
AGGTGTCCATTCCCAGAGCCCTCCTTTTTTGATCCATGCATCACACGATG
TGAGGACCGTTCTCTGTGGGTTCATCATTTTCAGCTTCATTTACTTGCCC
GTATTGTGCATCACTTGCGCCTGTATCATTCTTTAACGAGTTGGCAACTC
ATTCCCCCCCTCCCTGACATTCACCACCGCTCTAAGAAACATGCCATTTG
CCCTTAACGTATTACTTTCTCCTTACCACACCATACTTGACAGATGATCG
ATCCCGCTTGTCGGTCTTTCCTTCCATCTGCACCACAAGCAACCAACTAC
AGTCATGACACCACGCATTCTCTCTTCCGAGGACCTTGAACCCTCCATGA
CCTCGACCACACGCCAGCGAGAGCCCAGTGTCAAAAGCCGTCGGGTGGCC
ATGGCCACGCATGACGAGCTGACCAACGACCCCATCGCCTGGCCCACCCT
CATCCTCTTCGCAGCCTCCCTCACTACCTACCTCCTCCCTATCCTCCTCT
TCCACGACAATCCGACGTACTGGACCGTTCCTGTTACAGCGGTGGCGACA
TATACCATGTTTACGGCCATGCACGAAGCGGCCCATCGGGCGATCTCGGC
AGAGTATCGATGGGTGAATGAGCTGATTGGACACATTTCCTCACTGATTT
GTTTCCAGGCGCCGTTTCAAGCATTTCGATTTATTCACTTGAGCCACCAC
AAGTACACGAATGACCCCAAAAAAGACCCGTGAGTTAATGTGAACCATTG
GAACCAGAAGGTGGCGGGAGGGTCGGGGGGAAGGTGTGTCCATGTGTACG
GGATCTATGCACTTTTACACTAAAATTGTTTTCCTCCGTATAAAACTCGA
CTCCATCATGCTCAGCATTCCTCCCTTTCTTTCCCCCCTCTATCTTCTTC
AAATCAGCGATCATTGGTCAGCCGGACATGGCCCTGAGTGGGTTCAACCC
TTTTTCTGGTGCACACAAACCCTGCATTATTATTGGCGATACTTCCGTGA
CATCTCCTCCCGCCCCTTCGACGAGGCCGCCGAGGCCGTGCTCGTCACGC
TCGTCATCCTCCTGAGCGTGTCCTTCCTCCTTTCCAAAGGGTGCGGATAC
CAGCTCTGGATCTTTGTGGGGCTTCCCCGAATGATAACTGACCCTTGCCT
GGCCTACTCGTTTGATTACGCGCCTCACCACCCCCACGAGGCCTCGCGGG
CAGAAGATGTGTATGGGTGCACGGCCATGATCGGTGGCTTGCTCTCTCCG
GACGATGGCGTTGATCTGACGGTGCCCTTGATATATCAGAATTATCACAA
CATCCATCACCTGTACCCGACAATTCCCTTTTACAAGTACCCTCTTATGT
GGCGCAACCACCGGAAGATCTTGCTTGAGCTGGGAACACCGGTCGGGTCG
TGGTTTGGCCCGCTCGTGTCGAGAAGGGGGGGGAGGGAGCGAGGGGCAGG
GAAGGGAAAGAGGGTGGTTGAGGAGCAAGATCAGCAAAATAATTATCATG
TGCATGCACAGTGAGGGGAAGGAAGAAGAAAGGAAGCGAGGAAGAAGAGT
AAAAACAGACTGCGTGTGCCTAAAGAGAGGGGAAAGAGAGCATGAAGGCC
AACGTGAGCCTGAGTTAGAGTCTGGGTGGAGGGGAAAAAAGAGCAGCAAA
GGCCGGGACGGGGGAAATGTTGCAACTGTCATGTCACAGATTGTGCCCAT
GCGTGCTCTTTTTGTGCAAGCGTGCGTCGAAATTGAAAACGACAAAGACA
GAACCCGAGGATAGGCGAGAACAAGGAGGAAAGTGAGGAACACCAACAAG
ATAGGCAAAGGGGCCTTGCTTAACATTTTGAAAGGACATACGTCTGACGC
GTGGGAGAAGGTGATGAGGCATCTATTTACACATACATCAGGGGGAGAAT
GGTTTTGGGGGCCATCCATATTGGATTTTTTTCTTAATGGAAAAGAATGC
AGCTGCGAACCACGGGAGACATTCGCAGAAAGCTTCGAACCCTGTAGATC
TGGGTTTGATTCATCATACACACCCCTATAAATACGTACAGCATAAGGTC
AAATCTCCCCTACAGGGACGAGCTCGAAGGGCGAAGGGAGGGGGGGAAAA
CGGAGAGTAATTCGGAAAGAAGACGAAGGAAGAGGAGAAAAAAATTGAGC
GATTTTTATCACACGAATGTATTGAGAGGTAGAGGGAAAAGATTGATAGT
CATTTTTTGGGGAAGCGGGCTGAAGAGACCAAAGAAGAGGATTGTTATCT
ACGTCTCTGACCGAAAAAGCGAGAAGAAACAGAGACAAGAGGAAGAAGTC
CTAAAGCAGAGGAAAGAAGTGTGGTAGAGACGGTAGCTACACTCCACCAT
TCATATGCCTGTGCAATCGAAGGGCACAGAACACAAAAAGTGTGAGGGAA
AGGACCATCACAGAAGCGACGATGACACGTTTGGGATGTCTCAAGTTTCT
CTTCTATTCTAGTGCAAGTCAAAGACCGAGCAGCAGATGAATATATGTAA
AGAGACAAGACCCTTAAAAGAAAAACCAAACGCTCCTCCATGGGG
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protein sequence of NO05G01930.2

>NO05G01930.2-protein ID=NO05G01930.2-protein|Name=NO05G01930.2|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MCTGSMHFYTKIVFLRIKLDSIMLSIPPFLSPLYLLQISDHWSAGHGPEW
VQPFFWCTQTLHYYWRYFRDISSRPFDEAAEAVLVTLVILLSVSFLLSKG
CGYQLWIFVGLPRMITDPCLAYSFDYAPHHPHEASRAEDVYGCTAMIGGL
LSPDDGVDLTVPLIYQNYHNIHHLYPTIPFYKYPLMWRNHRKILLELGTP
VGSWFGPLVSRRGGRERGAGKGKRVVEEQDQQNNYHVHAQ*
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mRNA from alignment at chr5:526346..529337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01930.2 ID=NO05G01930.2|Name=NO05G01930.2|organism=Nannochloropsis oceanica|type=mRNA|length=2992bp|location=Sequence derived from alignment at chr5:526346..529337- (Nannochloropsis oceanica)
ACCGACATCACATCGATCAACTCTGCCCTCCCGTACATGTATTCGCAAGG
TCAACCCTTGGGGCCAGCGCCACTTAAGGCAAGATCTGATGCCTTGTGCG
TCTGTTGGGATATCTGGTGGCATCTTTTGTGCCCCCCAAGCTTTTTGCAC
AGGACGCCAAGACTTCCACTGCCACTATGCGTCAAGACCATTACACTTCA
AGGTGTCCATTCCCAGAGCCCTCCTTTTTTGATCCATGCATCACACGATG
TGAGGACCGTTCTCTGTGGGTTCATCATTTTCAGCTTCATTTACTTGCCC
GTATTGTGCATCACTTGCGCCTGTATCATTCTTTAACGAGTTGGCAACTC
ATTCCCCCCCTCCCTGACATTCACCACCGCTCTAAGAAACATGCCATTTG
CCCTTAACGTATTACTTTCTCCTTACCACACCATACTTGACAGATGATCG
ATCCCGCTTGTCGGTCTTTCCTTCCATCTGCACCACAAGCAACCAACTAC
AGTCATGACACCACGCATTCTCTCTTCCGAGGACCTTGAACCCTCCATGA
CCTCGACCACACGCCAGCGAGAGCCCAGTGTCAAAAGCCGTCGGGTACGT
GCTGTGTGTCTTGGCATGCGAGTATCCAATTCCTATTCCCATACTGTTCT
TCTGGGCTGGTGGGGTACCTGAGGGAAGGCATTTTGATTGTCTCCCCCGA
CCCGGACTGGGAGTTGTAGCCATTTTGTGTTTTTTTCTTGTACCATGCTG
CCGCTGGGCTTTTTTCTCCTCGTTTCTACTGATCTTGTTTTTCACATCGC
CCGTTCACGTTCTTTCCCGCCATGTTCTATCCTATATTCAGGTGGCCATG
GCCACGCATGACGAGCTGACCAACGACCCCATCGCCTGGCCCACCCTCAT
CCTCTTCGCAGCCTCCCTCACTACCTACCTCCTCCCTATCCTCCTCTTCC
ACGACAATCCGACGTACTGGACCGTTCCTGTTACAGCGGTGGCGACATAT
ACCATGTTTACGGCCATGCACGAAGCGGCCCATCGGGCGATCTCGGCAGA
GTATCGATGGGTGAATGAGCTGATTGGACACATTTCCTCACTGATTTGTT
TCCAGGCGCCGTTTCAAGCATTTCGATTTATTCACTTGAGCCACCACAAG
TACACGAATGACCCCAAAAAAGACCCGTGAGTTAATGTGAACCATTGGAA
CCAGAAGGTGGCGGGAGGGTCGGGGGGAAGGTGTGTCCATGTGTACGGGA
TCTATGCACTTTTACACTAAAATTGTTTTCCTCCGTATAAAACTCGACTC
CATCATGCTCAGCATTCCTCCCTTTCTTTCCCCCCTCTATCTTCTTCAAA
TCAGCGATCATTGGTCAGCCGGACATGGCCCTGAGTGGGTTCAACCCTTT
TTCTGGTGCACACAAACCCTGCATTATTATTGGCGATACTTCCGTGACAT
CTCCTCCCGCCCCTTCGACGAGGCCGCCGAGGCCGTGCTCGTCACGCTCG
TCATCCTCCTGAGCGTGTCCTTCCTCCTTTCCAAAGGGTGCGGATACCAG
CTCTGGATCTTTGTGGGGCTTCCCCGAATGATAACTGACCCTTGCCTGGC
CTACTCGTTTGATTACGCGCCTCACCACCCCCACGAGGCCTCGCGGGCAG
AAGATGTGTATGGGTGCACGGCCATGATCGGTGGCTTGCTCTCTCCGGAC
GATGGCGTTGATCTGACGGTGCCCTTGATATATCAGAATTATCACAACAT
CCATCACCTGTACCCGACAATTCCCTTTTACAAGTACCCTCTTATGTGGC
GCAACCACCGGAAGATCTTGCTTGAGCTGGGAACACCGGTCGGGTCGTGG
TTTGGCCCGCTCGTGTCGAGAAGGGGGGGGAGGGAGCGAGGGGCAGGGAA
GGGAAAGAGGGTGGTTGAGGAGCAAGATCAGCAAAATAATTATCATGTGC
ATGCACAGTGAGGGGAAGGAAGAAGAAAGGAAGCGAGGAAGAAGAGTAAA
AACAGACTGCGTGTGCCTAAAGAGAGGGGAAAGAGAGCATGAAGGCCAAC
GTGAGCCTGAGTTAGAGTCTGGGTGGAGGGGAAAAAAGAGCAGCAAAGGC
CGGGACGGGGGAAATGTTGCAACTGTCATGTCACAGATTGTGCCCATGCG
TGCTCTTTTTGTGCAAGCGTGCGTCGAAATTGAAAACGACAAAGACAGAA
CCCGAGGATAGGCGAGAACAAGGAGGAAAGTGAGGAACACCAACAAGATA
GGCAAAGGGGCCTTGCTTAACATTTTGAAAGGACATACGTCTGACGCGTG
GGAGAAGGTGATGAGGCATCTATTTACACATACATCAGGGGGAGAATGGT
TTTGGGGGCCATCCATATTGGATTTTTTTCTTAATGGAAAAGAATGCAGC
TGCGAACCACGGGAGACATTCGCAGAAAGCTTCGAACCCTGTAGATCTGG
GTTTGATTCATCATACACACCCCTATAAATACGTACAGCATAAGGTCAAA
TCTCCCCTACAGGGACGAGCTCGAAGGGCGAAGGGAGGGGGGGAAAACGG
AGAGTAATTCGGAAAGAAGACGAAGGAAGAGGAGAAAAAAATTGAGCGAT
TTTTATCACACGAATGTATTGAGAGGTAGAGGGAAAAGATTGATAGTCAT
TTTTTGGGGAAGCGGGCTGAAGAGACCAAAGAAGAGGATTGTTATCTACG
TCTCTGACCGAAAAAGCGAGAAGAAACAGAGACAAGAGGAAGAAGTCCTA
AAGCAGAGGAAAGAAGTGTGGTAGAGACGGTAGCTACACTCCACCATTCA
TATGCCTGTGCAATCGAAGGGCACAGAACACAAAAAGTGTGAGGGAAAGG
ACCATCACAGAAGCGACGATGACACGTTTGGGATGTCTCAAGTTTCTCTT
CTATTCTAGTGCAAGTCAAAGACCGAGCAGCAGATGAATATATGTAAAGA
GACAAGACCCTTAAAAGAAAAACCAAACGCTCCTCCATGGGG
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Coding sequence (CDS) from alignment at chr5:526346..529337-

>NO05G01930.2 ID=NO05G01930.2|Name=NO05G01930.2|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at chr5:526346..529337- (Nannochloropsis oceanica)
ATGTGTACGGGATCTATGCACTTTTACACTAAAATTGTTTTCCTCCGTAT
AAAACTCGACTCCATCATGCTCAGCATTCCTCCCTTTCTTTCCCCCCTCT
ATCTTCTTCAAATCAGCGATCATTGGTCAGCCGGACATGGCCCTGAGTGG
GTTCAACCCTTTTTCTGGTGCACACAAACCCTGCATTATTATTGGCGATA
CTTCCGTGACATCTCCTCCCGCCCCTTCGACGAGGCCGCCGAGGCCGTGC
TCGTCACGCTCGTCATCCTCCTGAGCGTGTCCTTCCTCCTTTCCAAAGGG
TGCGGATACCAGCTCTGGATCTTTGTGGGGCTTCCCCGAATGATAACTGA
CCCTTGCCTGGCCTACTCGTTTGATTACGCGCCTCACCACCCCCACGAGG
CCTCGCGGGCAGAAGATGTGTATGGGTGCACGGCCATGATCGGTGGCTTG
CTCTCTCCGGACGATGGCGTTGATCTGACGGTGCCCTTGATATATCAGAA
TTATCACAACATCCATCACCTGTACCCGACAATTCCCTTTTACAAGTACC
CTCTTATGTGGCGCAACCACCGGAAGATCTTGCTTGAGCTGGGAACACCG
GTCGGGTCGTGGTTTGGCCCGCTCGTGTCGAGAAGGGGGGGGAGGGAGCG
AGGGGCAGGGAAGGGAAAGAGGGTGGTTGAGGAGCAAGATCAGCAAAATA
ATTATCATGTGCATGCACAGTGA
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Synonyms
Publications