NO05G01920.1, NO05G01920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01920.1
Unique NameNO05G01920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1576
Alignment locationchr5:523649..525902 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:523649..525902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01920.1 vs.
Match: EWM28258.1 (ddb1 and cul4-associated factor 7 [Nannochloropsis gaditana])

HSP 1 Score: 614.8 bits (1584), Expect = 1.700e-172
Identity = 296/353 (83.85%), Postives = 315/353 (89.24%), Query Frame = 0 
Query:    1 MGDSGGR-KKEIYSYQTDWLIFAMAWNQRANMSDRFRIALGSCIEEYNNKIRIIERSPSSISSSSSVDSTPANANDDG-FHKVTEFDHPYPATKVMWCPDREPVSPQRDLLATTGDYLRIWNCSGSEPKLEALLNNNKNSEYCAPLTSFDWNKDDPSLLGTACIDTTCTIWDVNTQQAKTQIIAHDKEVYDIAFARGKDLFASVGADGSVRMFDLRSLVHSTIIYESPELTPLLRLAWNKQDPNYLAAIMADSAKTFLLDIRKPSSTVAELGEHQGPVNSLAWAPHSACHICTCGEDRQALIWDLTALPGPVDSPILAYAAQAEVNTVEWFQQSAERNWVAIGFDNQLQVLRV 352
            MGD     KKEIY+Y+T WLIFAMAWNQR +MS+RFRIALGS IEEYNNKIRIIER  SS SS          AN DG   +V EFDHPYPATK+MWCPDREPVSPQRDLLATTGDYLRIWN +  E KLEALLNNNKNSE+CAPLTSFDWNKDDPSLLGTACIDTTCTIWDVN QQAKTQIIAHDKEVYDIAFARGKDLFASVGADGSVRMFDLRSLVHSTIIYESP+L PLLRLAWN+QDPNYLA IMADS KT+LLDIRKPSSTVAELGEHQG VNSL+WAPHSACHICTCGEDRQALIWDL+ALPGP++SPILAY AQAE+N++EWFQQS ERNWV IGFDN+LQVLRV
Sbjct:   46 MGDDANESKKEIYNYETSWLIFAMAWNQRTDMSNRFRIALGSYIEEYNNKIRIIERIHSSTSS----------ANGDGSLQRVMEFDHPYPATKIMWCPDREPVSPQRDLLATTGDYLRIWNVNSGEAKLEALLNNNKNSEFCAPLTSFDWNKDDPSLLGTACIDTTCTIWDVNAQQAKTQIIAHDKEVYDIAFARGKDLFASVGADGSVRMFDLRSLVHSTIIYESPDLVPLLRLAWNRQDPNYLATIMADSTKTYLLDIRKPSSTVAELGEHQGAVNSLSWAPHSACHICTCGEDRQALIWDLSALPGPIESPILAYTAQAEINSLEWFQQSPERNWVGIGFDNRLQVLRV 388
The following BLAST results are available for this feature:
BLAST of NO05G01920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28258.11.700e-17283.85ddb1 and cul4-associated factor 7 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01920NO05G01920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01920.1NO05G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01920.1.cds1NO05G01920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01920.1.cds2NO05G01920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01920.1.cds3NO05G01920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01920.1.cds4NO05G01920.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01920.1 ID=NO05G01920.1|Name=NO05G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1576bp
CAAAAGGTTAGGGCGGGGGCAGAGGACGCAGGAGGTTGTTGCATCATCCG
GCTACATCATGGGCGTGCTGTTGTGTGCTGTTGTGCAATGCTTTTAGCGG
CACTTAGCTTAGCGGTCCCTTGTGACACAGCCTGTAGGGTTTCTTGATTA
CGCTCATGGCCTTGTACTCACCAGTTACAGCTCCCTTTCGTCTCACAATC
CTTTTACACTTGCCCTCCAACTCTGTACATGCAGGCGACATAATCAAGCC
GAAGCCGTTGCCGGAGTCGCTGGACACAAACGAGCGACGCTTCTACAAGC
GCAAGGTCATACACCACGATAAATATGGGGGACAGCGGCGGCAGAAAGAA
GGAGATCTATTCCTATCAGACCGATTGGCTTATCTTTGCCATGGCCTGGA
ACCAACGCGCAAATATGTCCGACCGCTTCCGCATTGCTCTCGGCTCCTGC
ATCGAAGAATACAACAACAAAATACGAATCATTGAACGCAGCCCCTCCTC
CATTTCCTCCTCCTCCTCCGTCGACTCCACCCCTGCCAACGCCAACGACG
ACGGTTTTCATAAAGTAACGGAATTCGATCATCCTTACCCTGCGACTAAG
GTGATGTGGTGTCCCGACCGAGAGCCTGTCAGCCCTCAACGGGACCTGCT
GGCCACAACGGGCGATTACTTAAGGATATGGAATTGCAGTGGATCGGAAC
CCAAGCTGGAGGCGTTGCTGAACAATAATAAGAACAGCGAGTACTGCGCC
CCCCTCACCTCCTTCGACTGGAACAAGGACGACCCTTCCTTACTCGGGAC
GGCGTGCATTGACACCACCTGCACGATTTGGGACGTGAACACGCAGCAGG
CCAAGACCCAGATTATTGCTCACGATAAGGAGGTCTATGATATTGCCTTC
GCCCGTGGCAAGGATCTGTTCGCTTCCGTCGGCGCAGACGGCTCCGTGCG
TATGTTCGACCTCCGCTCCCTCGTCCACTCCACCATCATCTACGAATCAC
CCGAGCTGACTCCCCTCCTCCGCCTGGCATGGAACAAACAAGACCCGAAT
TACCTCGCGGCCATCATGGCGGACAGCGCTAAAACTTTTCTGCTTGACAT
CCGGAAGCCCTCCTCGACCGTCGCCGAGCTCGGAGAGCATCAAGGCCCTG
TTAATTCCCTCGCCTGGGCACCGCATTCTGCTTGCCATATCTGCACGTGC
GGCGAAGACAGACAAGCATTGATCTGGGACCTCACTGCGCTGCCGGGGCC
GGTAGACAGTCCGATTCTGGCATACGCGGCGCAGGCGGAGGTAAACACTG
TGGAGTGGTTTCAGCAGAGCGCTGAGAGGAATTGGGTGGCGATTGGATTT
GACAACCAGTTGCAGGTTTTGCGGGTGTAAGGCGGGAGGGATGGAAAAAG
GGAGGGAGGAAGAGATGGGCTGTATAATGGATGAGATGGAGGGATGGAGA
GGTGTAACAGTATGGATGTCGGGGCCTTGTCTTTCTTTTGTGTCTGTGGA
AGGGGAAAAGGAATGTAGGACGGAGTGGGAGGCAGCGAATGAAAGAGACG
CGATCCTTGTCTTAGGGGGCGGGGGG
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protein sequence of NO05G01920.1

>NO05G01920.1-protein ID=NO05G01920.1-protein|Name=NO05G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MGDSGGRKKEIYSYQTDWLIFAMAWNQRANMSDRFRIALGSCIEEYNNKI
RIIERSPSSISSSSSVDSTPANANDDGFHKVTEFDHPYPATKVMWCPDRE
PVSPQRDLLATTGDYLRIWNCSGSEPKLEALLNNNKNSEYCAPLTSFDWN
KDDPSLLGTACIDTTCTIWDVNTQQAKTQIIAHDKEVYDIAFARGKDLFA
SVGADGSVRMFDLRSLVHSTIIYESPELTPLLRLAWNKQDPNYLAAIMAD
SAKTFLLDIRKPSSTVAELGEHQGPVNSLAWAPHSACHICTCGEDRQALI
WDLTALPGPVDSPILAYAAQAEVNTVEWFQQSAERNWVAIGFDNQLQVLR
V*
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mRNA from alignment at chr5:523649..525902+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01920.1 ID=NO05G01920.1|Name=NO05G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2254bp|location=Sequence derived from alignment at chr5:523649..525902+ (Nannochloropsis oceanica)
CAAAAGGTTAGGGCGGGGGCAGAGGACGCAGGAGGTTGTTGCATCATCCG
GCTACATCATGGGCGTGCTGTTGTGTGCTGTTGTGCAATGCTTTTAGCGG
CACTTAGCTTAGCGGTCCCTTGTGACACAGCCTGTAGGGTTTCTTGATTA
CGCTCATGGCCTTGTACTCACCAGTTACAGCTCCCTTTCGTCTCACAATC
CTTTTACACTTGCCCTCCAACTCTGTACATGCAGGCGACATAATCAAGCC
GAAGCCGTTGCCGGAGTCGCTGGACACAAACGAGCGACGCTTCTACAAGC
GCAAGGTCATACACCACGATAAATATGGGGGACAGCGGCGGCAGAAAGAA
GGAGGTGAGTCCTGGGAGGGTGTATTGCGGGCGGAAGTCAAGTATTAGGA
TGGTAAGGGGAGGAAGTGCTTGTCTACGTGTCATTTCATACGCGGCCTCT
GAGCATGGTGGGATAGAATGTGGAGTGCAGCTCGTGGTGGTATGTGGATG
TCTTGGGCTCGTGCATGTGTATTAAATGCATGCTTGCAGTGCCTTGCTTG
TAATAGAGTGAGAGTGCGTGATCTGGATGGGGATAGGTGTGCTTGCACGG
CTCTTTGCTCCTAGTCTTGGGGCGACAGGTCACAATTGACGTGAGGGAAG
GCCTTATTGGCTGTGTGTTGGGCGTAACCGCCATTTGTCTGTTCCTCTTT
GTGCTCTTTCGATGTGTTCAAGTCCCGCTATTCGGAATCTACCACATTCC
CTTATCTCTCTGTCTCTTTCACCTCCTTCCCTCCTTTCCCTCCCTCCTTC
CCCCACAGATCTATTCCTATCAGACCGATTGGCTTATCTTTGCCATGGCC
TGGAACCAACGCGCAAATATGTCCGACCGCTTCCGCATTGCTCTCGGCTC
CTGCATCGAAGAATACAACAACAAAATACGAATCATTGAACGCAGCCCCT
CCTCCATTTCCTCCTCCTCCTCCGTCGACTCCACCCCTGCCAACGCCAAC
GACGACGGTTTTCATAAAGTAACGGAATTCGATCATCCTTACCCTGCGAC
TAAGGTGATGTGGTGTCCCGACCGAGAGCCTGTCAGCCCTCAACGGGACC
TGCTGGCCACAACGGGCGATTACTTAAGGATATGGAATTGCAGTGGATCG
GAACCCAAGCTGGAGGCGTTGCTGAACAATGTGAGTGTCCGAGAAGTGGG
TTAGGGAGGAAAGGCGAGGATGCAGTCAAGTTTTGTCTGCTTATTCTATG
TCGGCGAACAAGTTTTATGACATTTCCATTCCTTTCTCGCATCTCTTAGA
ATAAGAACAGCGAGTACTGCGCCCCCCTCACCTCCTTCGACTGGAACAAG
GACGACCCTTCCTTACTCGGGACGGCGTGCATTGACACCACCTGCACGAT
TTGGGACGTGAACACGCAGCAGGCCAAGACCCAGATTATTGCTCACGATA
AGGAGGTCTATGATATTGGTGAGGAAAGAGGGGAAGGAGGGAGGGAAAGA
GGGCCGAGGCGGCTTCAATGGTGTAGCAGTACCACCTTTAACTCCAACCC
CTCCCCTTTTTCCTTCCCTCCAGCCTTCGCCCGTGGCAAGGATCTGTTCG
CTTCCGTCGGCGCAGACGGCTCCGTGCGTATGTTCGACCTCCGCTCCCTC
GTCCACTCCACCATCATCTACGAATCACCCGAGCTGACTCCCCTCCTCCG
CCTGGCATGGAACAAACAAGACCCGAATTACCTCGCGGCCATCATGGCGG
ACAGCGCTAAAACTTTTCTGCTTGACATCCGGAAGCCCTCCTCGACCGTC
GCCGAGCTCGGAGAGCATCAAGGCCCTGTTAATTCCCTCGCCTGGGCACC
GCATTCTGCTTGCCATATCTGCACGTGCGGCGAAGACAGACAAGCATTGA
TCTGGGACCTCACTGCGCTGCCGGGGCCGGTAGACAGTCCGATTCTGGCA
TACGCGGCGCAGGCGGAGGTAAACACTGTGGAGTGGTTTCAGCAGAGCGC
TGAGAGGAATTGGGTGGCGATTGGATTTGACAACCAGTTGCAGGTTTTGC
GGGTGTAAGGCGGGAGGGATGGAAAAAGGGAGGGAGGAAGAGATGGGCTG
TATAATGGATGAGATGGAGGGATGGAGAGGTGTAACAGTATGGATGTCGG
GGCCTTGTCTTTCTTTTGTGTCTGTGGAAGGGGAAAAGGAATGTAGGACG
GAGTGGGAGGCAGCGAATGAAAGAGACGCGATCCTTGTCTTAGGGGGCGG
GGGG
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Coding sequence (CDS) from alignment at chr5:523649..525902+

>NO05G01920.1 ID=NO05G01920.1|Name=NO05G01920.1|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at chr5:523649..525902+ (Nannochloropsis oceanica)
ATGGGGGACAGCGGCGGCAGAAAGAAGGAGATCTATTCCTATCAGACCGA
TTGGCTTATCTTTGCCATGGCCTGGAACCAACGCGCAAATATGTCCGACC
GCTTCCGCATTGCTCTCGGCTCCTGCATCGAAGAATACAACAACAAAATA
CGAATCATTGAACGCAGCCCCTCCTCCATTTCCTCCTCCTCCTCCGTCGA
CTCCACCCCTGCCAACGCCAACGACGACGGTTTTCATAAAGTAACGGAAT
TCGATCATCCTTACCCTGCGACTAAGGTGATGTGGTGTCCCGACCGAGAG
CCTGTCAGCCCTCAACGGGACCTGCTGGCCACAACGGGCGATTACTTAAG
GATATGGAATTGCAGTGGATCGGAACCCAAGCTGGAGGCGTTGCTGAACA
ATAATAAGAACAGCGAGTACTGCGCCCCCCTCACCTCCTTCGACTGGAAC
AAGGACGACCCTTCCTTACTCGGGACGGCGTGCATTGACACCACCTGCAC
GATTTGGGACGTGAACACGCAGCAGGCCAAGACCCAGATTATTGCTCACG
ATAAGGAGGTCTATGATATTGCCTTCGCCCGTGGCAAGGATCTGTTCGCT
TCCGTCGGCGCAGACGGCTCCGTGCGTATGTTCGACCTCCGCTCCCTCGT
CCACTCCACCATCATCTACGAATCACCCGAGCTGACTCCCCTCCTCCGCC
TGGCATGGAACAAACAAGACCCGAATTACCTCGCGGCCATCATGGCGGAC
AGCGCTAAAACTTTTCTGCTTGACATCCGGAAGCCCTCCTCGACCGTCGC
CGAGCTCGGAGAGCATCAAGGCCCTGTTAATTCCCTCGCCTGGGCACCGC
ATTCTGCTTGCCATATCTGCACGTGCGGCGAAGACAGACAAGCATTGATC
TGGGACCTCACTGCGCTGCCGGGGCCGGTAGACAGTCCGATTCTGGCATA
CGCGGCGCAGGCGGAGGTAAACACTGTGGAGTGGTTTCAGCAGAGCGCTG
AGAGGAATTGGGTGGCGATTGGATTTGACAACCAGTTGCAGGTTTTGCGG
GTGTAA
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Synonyms
Publications