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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:466962..470207 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01710.1 vs.
Match: EWM28196.1 (glucose-methanol-choline oxidoreductase [Nannochloropsis gaditana]) HSP 1 Score: 619.4 bits (1596), Expect = 9.300e-174 Identity = 310/465 (66.67%), Postives = 365/465 (78.49%), Query Frame = 0
Query: 9 REGGGEKEDFGKAWSWKEVLPYFVKSEDYAVKGAKDEM-----CGDVSTTAAAAATGVVHGVGGEWRVERQRLSWELLDKFRDACAEHGIPKVTDFNKGFNEGSSYFHVNQWNGIRWNTSKAWLHPITTHRSNLTVRTGVHVLKVILDPAGTTALGVEFAHFTSST-VIEKAYAGLETILAAGAVGSPHLLQLSGIGPVDALRAVGVPVLHPLPGVGANLQDHLQLRTVFTVKNVETLNEQYARWWGRVKMGWAYLRHRRGPLSMAPSQVGVFCKSDNTQSRANLQYHVQPLSLDKFGEPLHAFPAFTASVCHLRPSSRGHILLRDSDPRSPPLIQPNYLSTSEDRAIAADAIRLTRRLVLESKALAPFSPQEYIPGSRYASQEELEAAAGRVGTTIFHPAGTCKMGRGDNAMAVLDGRMKVRGVRRLRVCDTSVMPRITSGNTNSPTVMIAEKGSDFINQEHGT 468
R+ + + G+ WSW+ VLP F KSED+A + E+ GD+ ++ + HGVGGEWRVE+QRLSW++LD FRDAC E GIPKV DFN G N GSSYFHVNQ G RWNTSKAWLHPI R+NLTV T VHVLKV+LD + +ALGVEFA T V+E+AYAGLETILAAGAVGSPHLLQLSG+GP LR+ VPV H L GVGANLQDHLQLR VF + + TLN++YA WWGRVKMG YL RRGPLSMAPSQVGVFCKS+ T+ R +L++HVQPLSLD+FGEPLH FPAFTASVCHL+P+SRG +LLR+ DPR+PP IQPNYL+T++DRA+AA A+RLTRRLVL S+A PF P+EY PG SQ ELE AAGRVGTTIFHPAGTCKMGR D+ +AVLD +++VRG+ RLRVCDTS MP ITSGNT+SPT+MIAEK SDF++ HGT
Sbjct: 173 RKESAKDGENGEVWSWRGVLPDFTKSEDFAAGASIQEVERGSEGGDLYKSSPPKQDAI-HGVGGEWRVEKQRLSWKVLDTFRDACEEQGIPKVEDFNGGNNFGSSYFHVNQRGGWRWNTSKAWLHPIMGRRANLTVLTHVHVLKVLLDKSNGSALGVEFARSEVGTGVVERAYAGLETILAAGAVGSPHLLQLSGVGPPAPLRSADVPVKHALSGVGANLQDHLQLRMVFRISGLPTLNDEYASWWGRVKMGVEYLWDRRGPLSMAPSQVGVFCKSEATRRRPDLEFHVQPLSLDRFGEPLHPFPAFTASVCHLQPTSRGSVLLRNRDPRAPPRIQPNYLATAKDRAVAARALRLTRRLVLGSRAFLPFKPEEYAPGIACQSQAELEEAAGRVGTTIFHPAGTCKMGRADDPLAVLDAKLRVRGIERLRVCDTSAMPVITSGNTSSPTLMIAEKASDFLHAAHGT 636
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01710.1 ID=NO05G01710.1|Name=NO05G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2995bp CTTTGAGCGGCGAGTGATGTTGCTTTTAATTTACACTACATATGTTATTA GGATGGCGATTGGAATTTTACCGAGGCTCCATCATGAATGCGGTTGGAAA TTAGGATACTCTTATCTAGAGGTGGTCACTGGTACGACTATAACTCAACA AGGCTTTACGTCGAACCTGGAGGACTCAGTTGAGTCCTCAACTTAACCTT TTAACTATTTTTGATGAGCACGTAGACTCTGGCCAAAATGCGCCGCGTCT AAACCACCACCTCGTGGGGTCGTTGTCCACTAAATCCTATCCCTTACAGA GTGCCATCAGGAGAATGTACGGGTCATGATTATGGCGATTTACAGTGAGT CTTAGTGCTCCGATGTACCTTTCCTTTTGCTTGCTTTCAAAAACAAGAAT AACAAACCATACCACACTGCGGCGGCCCATATCCATAGTGTGAATGACGT TCACTGAGTGTGCATCTATCTACCATGCGTAAATAGCCAAGAATAGGGCT CAAAATTCATGACTACAGATAGACTGGAAAGTATATGGTCATTTTGGACG TCTTTTTATCAAATTGTGGCCACGTCTTTGAGACTGGGCCAGGAACCCTG GGGCAGAGGAGGCTTCGACAAGCAAGGTGGACTTGAGGTGCCCGTGGTAT GAAACAAAAAGTGACTCTCACGGCCTCGATTCGGACACATGTATAGCGAC TCTTGTTGGGACAGCCTTACAACTTTTGATTTCATGGCTAGCTCCTTTTC CTGGGAGCGCGGGTTCTCCTTTTGGTGGGGTTGCTTTGGTTGCACTTGCT CTCTCTCTTGGTTTTCACACTCGTGACACAACGAACCATACAGCAAAACA AGCCAAGCAAAAGAACATGCATTAGCGACAGCAAGGATTACAATGATGAT AGCTCTACTACCGCGCGGGCGCCGGCTCTTGCTTTGCTGCTGGTCCAAGA TCCCAGGGCATATCATACCCTCCAGGACATCCGTTATGAAGGCCGCCTCT TGGTCTTCCTTGTCCGCCAACTACGACTATGTCATTGTTGGTGGAGGCAG TGCCGGCTGCGTGCTCGCAAATCGTCTCTCGGTCAATCCACGCGTCAAAG TCCTGCTACTCGAAGCGGGTGGGGATGACCGCTTCATCCCATTTGTCCAT GTGCCGGTGGGATACCTGTGGAGCATCGCCAACCCCAAGGTCGACTGGTG CTTGAAAACGGAGCCCGTCCCAGGCCTGCATGGCCGCACGTTAGCCTACC CGAGGGGCAAGGTCTTAGGTGGCTGCTCTTCAATTAATGGCATGATATAT ATGCGTGGACAAGCGGAGGATTACGACGGATGGGCAGGGGAGATTGGGGA GGGAGGGAGGGAGGGGGGGAAAAGGAGGATTTTGGAAAGGCCTGGTCCTG GAAGGAGGTGTTGCCATACTTTGTCAAGTCGGAGGATTACGCCGTTAAGG GCGCAAAAGACGAAATGTGTGGTGATGTCTCCACTACTGCTGCTGCTGCC GCAACAGGGGTTGTGCATGGTGTAGGAGGGGAGTGGCGGGTGGAGAGACA AAGGTTGAGTTGGGAGTTGCTTGATAAATTTCGTGATGCCTGTGCCGAGC ACGGCATTCCGAAGGTGACTGATTTCAATAAAGGGTTCAATGAGGGCTCA AGCTATTTTCACGTGAATCAGTGGAACGGGATCAGATGGAACACGAGCAA GGCCTGGCTCCACCCTATTACTACGCACCGGTCCAATCTCACTGTTCGTA CCGGCGTGCATGTCCTCAAAGTCATCTTGGATCCCGCCGGGACTACTGCG CTCGGCGTCGAATTCGCACATTTTACCAGCAGCACGGTCATAGAGAAGGC ATATGCAGGGCTGGAGACTATATTAGCCGCAGGGGCGGTTGGCAGCCCTC ATTTACTCCAACTGAGCGGGATCGGCCCTGTGGACGCTCTGAGGGCTGTG GGCGTGCCCGTTCTACACCCCCTCCCTGGTGTCGGCGCAAACTTACAAGA CCATCTACAGCTACGCACGGTGTTCACGGTCAAGAACGTCGAAACGCTAA ACGAACAATACGCCCGATGGTGGGGTCGTGTCAAAATGGGATGGGCCTAC CTCCGGCACCGTCGAGGCCCCCTAAGCATGGCTCCCTCCCAAGTGGGCGT CTTTTGCAAGAGCGACAATACCCAATCTCGAGCCAACCTCCAATATCACG TCCAGCCCCTCTCACTCGATAAGTTTGGGGAGCCTTTGCATGCTTTCCCT GCCTTTACTGCGTCCGTCTGTCATCTCCGTCCGAGCTCCCGTGGCCACAT CCTTTTGCGTGACTCCGATCCTCGATCCCCTCCCTTGATCCAGCCAAATT ATTTGTCGACGTCAGAAGATAGGGCGATCGCCGCTGACGCTATCAGATTA ACGAGAAGGTTAGTTTTGGAGTCCAAAGCTCTAGCACCCTTTTCACCACA AGAATATATCCCGGGCTCTCGGTACGCAAGTCAGGAAGAGCTGGAGGCAG CAGCGGGGAGGGTTGGAACGACGATTTTCCACCCGGCGGGGACATGCAAA ATGGGGCGGGGAGATAATGCAATGGCGGTCCTGGATGGACGGATGAAGGT GAGGGGGGTGAGGAGGCTTAGAGTGTGCGACACCAGTGTCATGCCGCGGA TCACTAGTGGGAATACGAATAGCCCGACGGTGATGATTGCGGAGAAGGGG AGCGACTTTATCAATCAGGAGCATGGAACATGGGGGGGTCAGGGGTAAGA AAGGGTATAGAGAGAAGATGCGAATGTGTATCTGTGTATCTGTGCGAGGT TACTAGGGTGACTAGTGGCAATGCAATTAGCCAATCGGTGATTGTGGAGG AACGGAAAGACGTCACAATCGGTTAATATTGCGTAGACAACTTGTTTGTA AGCGACGTACAAAAGTGTACAGTGAATTTTCATAAATACCATCAAAAAAG AAGCACGTTAGTTGGCATGCAATATAATAAAAGGAAGGATTTGAC back to topprotein sequence of NO05G01710.1 >NO05G01710.1-protein ID=NO05G01710.1-protein|Name=NO05G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp MGRGDWGGREGGGEKEDFGKAWSWKEVLPYFVKSEDYAVKGAKDEMCGDV STTAAAAATGVVHGVGGEWRVERQRLSWELLDKFRDACAEHGIPKVTDFN KGFNEGSSYFHVNQWNGIRWNTSKAWLHPITTHRSNLTVRTGVHVLKVIL DPAGTTALGVEFAHFTSSTVIEKAYAGLETILAAGAVGSPHLLQLSGIGP VDALRAVGVPVLHPLPGVGANLQDHLQLRTVFTVKNVETLNEQYARWWGR VKMGWAYLRHRRGPLSMAPSQVGVFCKSDNTQSRANLQYHVQPLSLDKFG EPLHAFPAFTASVCHLRPSSRGHILLRDSDPRSPPLIQPNYLSTSEDRAI AADAIRLTRRLVLESKALAPFSPQEYIPGSRYASQEELEAAAGRVGTTIF HPAGTCKMGRGDNAMAVLDGRMKVRGVRRLRVCDTSVMPRITSGNTNSPT VMIAEKGSDFINQEHGTWGGQG* back to topmRNA from alignment at chr5:466962..470207- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01710.1 ID=NO05G01710.1|Name=NO05G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=3246bp|location=Sequence derived from alignment at chr5:466962..470207- (Nannochloropsis oceanica) CTTTGAGCGGCGAGTGATGTTGCTTTTAATTTACACTACATATGTTATTA
GGATGGCGATTGGAATTTTACCGAGGCTCCATCATGAATGCGGTTGGAAA
TTAGGATACTCTTATCTAGAGGTGGTCACTGGTACGACTATAACTCAACA
AGGCTTTACGTCGAACCTGGAGGACTCAGTTGAGTCCTCAACTTAACCTT
TTAACTATTTTTGATGAGCACGTAGACTCTGGCCAAAATGCGCCGCGTCT
AAACCACCACCTCGTGGGGTCGTTGTCCACTAAATCCTATCCCTTACAGA
GTGCCATCAGGAGAATGTACGGGTCATGATTATGGCGATTTACAGTGAGT
CTTAGTGCTCCGATGTACCTTTCCTTTTGCTTGCTTTCAAAAACAAGAAT
AACAAACCATACCACACTGCGGCGGCCCATATCCATAGTGTGAATGACGT
TCACTGAGTGTGCATCTATCTACCATGCGTAAATAGCCAAGAATAGGGCT
CAAAATTCATGACTACAGATAGACTGGAAAGTATATGGTCATTTTGGACG
TCTTTTTATCAAATTGTGGCCACGTCTTTGAGACTGGGCCAGGAACCCTG
GGGCAGAGGAGGCTTCGACAAGCAAGGTGGACTTGAGGTGCCCGTGGTAT
GAAACAAAAAGTGACTCTCACGGCCTCGATTCGGACACATGTATAGCGAC
TCTTGTTGGGACAGCCTTACAACTTTTGATTTCATGGCTAGCTCCTTTTC
CTGGGAGCGCGGGTTCTCCTTTTGGTGGGGTTGCTTTGGTTGCACTTGCT
CTCTCTCTTGGTTTTCACACTCGTGACACAACGAACCATACAGCAAAACA
AGCCAAGCAAAAGAACATGCATTAGCGACAGCAAGGATTACAATGATGAT
AGCTCTACTACCGCGCGGGCGCCGGCTCTTGCTTTGCTGCTGGTCCAAGA
TCCCAGGGCATATCATACCCTCCAGGACATCCGTTATGAAGGCCGCCTCT
TGGTCTTCCTTGTCCGCCAACTACGACTATGTCATTGTTGGTGGAGGCAG
TGCCGGCTGCGTGCTCGCAAATCGTCTCTCGGTCAATCCACGCGTCAAAG
TCCTGCTACTCGAAGCGGGTGGGGATGACCGCTTCATCCCATTTGTCCAT
GTGCCGGTGGGATACCTGTGGAGGTGCGTATGCGGCTCCTATGCCTTTTT
CAGCCAACAAAGGCACGAGTTCATGGTCAATTTTCATTTCTTATTTCCGC
TGAAAAACCCTTTCTTTTGTGTTCTCCTCCCTCCTCCGCAGCATCGCCAA
CCCCAAGGTCGACTGGTGCTTGAAAACGGAGCCCGTCCCAGGCCTGCATG
GCCGCACGTTAGCCTACCCGAGGGGCAAGGTCTTAGGTGGCTGCTCTTCA
ATTAATGGCATGATATATATGCGTGGACAAGCGGAGGATTACGACGGATG
GGCAGGGGAGATTGGGGAGGGAGGGAGGGAGGGGGGGAAAAGGAGGATTT
TGGAAAGGCCTGGTCCTGGAAGGAGGTGTTGCCATACTTTGTCAAGTCGG
AGGATTACGCCGTTAAGGGCGCAAAAGACGAAATGTGTGGTGATGTCTCC
ACTACTGCTGCTGCTGCCGCAACAGGGGTTGTGCATGGTGTAGGAGGGGA
GTGGCGGGTGGAGAGACAAAGGTTGAGTTGGGAGTTGCTTGATAAATTTC
GTGATGCCTGTGCCGAGCACGGCATTCCGAAGGTGACTGATTTCAATAAA
GGGTTCAATGAGGGCTCAAGCTATTTTCACGTGAATCAGTGGAACGGGAT
CAGATGGAACACGAGCAAGGTACGAATGAAAAACGTGAGGGAAGGGGTAG
GAAGGGAGGGAGGGAGGAAAGAATGGAGAAATAACGCCGGTCCATATTCC
ATTCACTTACTTTCCCGCATCCCCCCCCTTCTTCCCTCCCTTTCTCCCCT
AGGCCTGGCTCCACCCTATTACTACGCACCGGTCCAATCTCACTGTTCGT
ACCGGCGTGCATGTCCTCAAAGTCATCTTGGATCCCGCCGGGACTACTGC
GCTCGGCGTCGAATTCGCACATTTTACCAGCAGCACGGTCATAGAGAAGG
CATATGCAGGGCTGGAGACTATATTAGCCGCAGGGGCGGTTGGCAGCCCT
CATTTACTCCAACTGAGCGGGATCGGCCCTGTGGACGCTCTGAGGGCTGT
GGGCGTGCCCGTTCTACACCCCCTCCCTGGTGTCGGCGCAAACTTACAAG
ACCATCTACAGCTACGCACGGTGTTCACGGTCAAGAACGTCGAAACGCTA
AACGAACAATACGCCCGATGGTGGGGTCGTGTCAAAATGGGATGGGCCTA
CCTCCGGCACCGTCGAGGCCCCCTAAGCATGGCTCCCTCCCAAGTGGGCG
TCTTTTGCAAGAGCGACAATACCCAATCTCGAGCCAACCTCCAATATCAC
GTCCAGCCCCTCTCACTCGATAAGTTTGGGGAGCCTTTGCATGCTTTCCC
TGCCTTTACTGCGTCCGTCTGTCATCTCCGTCCGAGCTCCCGTGGCCACA
TCCTTTTGCGTGACTCCGATCCTCGATCCCCTCCCTTGATCCAGCCAAAT
TATTTGTCGACGTCAGAAGATAGGGCGATCGCCGCTGACGCTATCAGATT
AACGAGAAGGTTAGTTTTGGAGTCCAAAGCTCTAGCACCCTTTTCACCAC
AAGAATATATCCCGGGCTCTCGGTACGCAAGTCAGGAAGAGCTGGAGGCA
GCAGCGGGGAGGGTTGGAACGACGATTTTCCACCCGGCGGGGACATGCAA
AATGGGGCGGGGAGATAATGCAATGGCGGTCCTGGATGGACGGATGAAGG
TGAGGGGGGTGAGGAGGCTTAGAGTGTGCGACACCAGTGTCATGCCGCGG
ATCACTAGTGGGAATACGAATAGCCCGACGGTGATGATTGCGGAGAAGGG
GAGCGACTTTATCAATCAGGAGCATGGAACATGGGGGGGTCAGGGGTAAG
AAAGGGTATAGAGAGAAGATGCGAATGTGTATCTGTGTATCTGTGCGAGG
TTACTAGGGTGACTAGTGGCAATGCAATTAGCCAATCGGTGATTGTGGAG
GAACGGAAAGACGTCACAATCGGTTAATATTGCGTAGACAACTTGTTTGT
AAGCGACGTACAAAAGTGTACAGTGAATTTTCATAAATACCATCAAAAAA
GAAGCACGTTAGTTGGCATGCAATATAATAAAAGGAAGGATTTGAC back to topCoding sequence (CDS) from alignment at chr5:466962..470207- >NO05G01710.1 ID=NO05G01710.1|Name=NO05G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at chr5:466962..470207- (Nannochloropsis oceanica) ATGGGCAGGGGAGATTGGGGAGGGAGGGAGGGAGGGGGGGAAAAGGAGGA TTTTGGAAAGGCCTGGTCCTGGAAGGAGGTGTTGCCATACTTTGTCAAGT CGGAGGATTACGCCGTTAAGGGCGCAAAAGACGAAATGTGTGGTGATGTC TCCACTACTGCTGCTGCTGCCGCAACAGGGGTTGTGCATGGTGTAGGAGG GGAGTGGCGGGTGGAGAGACAAAGGTTGAGTTGGGAGTTGCTTGATAAAT TTCGTGATGCCTGTGCCGAGCACGGCATTCCGAAGGTGACTGATTTCAAT AAAGGGTTCAATGAGGGCTCAAGCTATTTTCACGTGAATCAGTGGAACGG GATCAGATGGAACACGAGCAAGGCCTGGCTCCACCCTATTACTACGCACC GGTCCAATCTCACTGTTCGTACCGGCGTGCATGTCCTCAAAGTCATCTTG GATCCCGCCGGGACTACTGCGCTCGGCGTCGAATTCGCACATTTTACCAG CAGCACGGTCATAGAGAAGGCATATGCAGGGCTGGAGACTATATTAGCCG CAGGGGCGGTTGGCAGCCCTCATTTACTCCAACTGAGCGGGATCGGCCCT GTGGACGCTCTGAGGGCTGTGGGCGTGCCCGTTCTACACCCCCTCCCTGG TGTCGGCGCAAACTTACAAGACCATCTACAGCTACGCACGGTGTTCACGG TCAAGAACGTCGAAACGCTAAACGAACAATACGCCCGATGGTGGGGTCGT GTCAAAATGGGATGGGCCTACCTCCGGCACCGTCGAGGCCCCCTAAGCAT GGCTCCCTCCCAAGTGGGCGTCTTTTGCAAGAGCGACAATACCCAATCTC GAGCCAACCTCCAATATCACGTCCAGCCCCTCTCACTCGATAAGTTTGGG GAGCCTTTGCATGCTTTCCCTGCCTTTACTGCGTCCGTCTGTCATCTCCG TCCGAGCTCCCGTGGCCACATCCTTTTGCGTGACTCCGATCCTCGATCCC CTCCCTTGATCCAGCCAAATTATTTGTCGACGTCAGAAGATAGGGCGATC GCCGCTGACGCTATCAGATTAACGAGAAGGTTAGTTTTGGAGTCCAAAGC TCTAGCACCCTTTTCACCACAAGAATATATCCCGGGCTCTCGGTACGCAA GTCAGGAAGAGCTGGAGGCAGCAGCGGGGAGGGTTGGAACGACGATTTTC CACCCGGCGGGGACATGCAAAATGGGGCGGGGAGATAATGCAATGGCGGT CCTGGATGGACGGATGAAGGTGAGGGGGGTGAGGAGGCTTAGAGTGTGCG ACACCAGTGTCATGCCGCGGATCACTAGTGGGAATACGAATAGCCCGACG GTGATGATTGCGGAGAAGGGGAGCGACTTTATCAATCAGGAGCATGGAAC ATGGGGGGGTCAGGGGTAA back to top
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