NO05G00900.1, NO05G00900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00900.1
Unique NameNO05G00900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1418
Alignment locationchr5:278235..279652 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:278235..279652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00900.1 vs.
Match: XP_005853694.1 (protein tyrosine phosphatase type iva protein 1 [Nannochloropsis gaditana CCMP526]; EKU22665.1 protein tyrosine phosphatase type iva protein 1 [Nannochloropsis gaditana CCMP526]; EWM28224.1 protein tyrosine phosphatase type iva protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 270.0 bits (689), Expect = 7.100e-69
Identity = 150/247 (60.73%), Postives = 178/247 (72.06%), Query Frame = 0 
Query:    1 MAPPQTSSQSLHSNSFPYTSTTAVLAGKPTFIVWGKLRFLLMDAPRDSNLAQYLRVAKHYNVTALVRVCEPTYNVAEVEAAGIQMYDMAYDDGCSPPPEVIERWLALVDEVLIKPSRRSSLSYSNGNGSGSTTTSTPTSRDSSSATIPAIMASPIESQQE----QQQQQQQQQQLPPPAIAVHCVAGLGRAPVLVALALIEHGFGDPSAVVEYIRSQRRGAINMRQLNYLEQYKKRGSETCGGCCVM 244
            MAPPQ++ +  +S S P TS  AVLAGKPTF+ WGKLRFLLMDAPRD NL+ Y+R AK +NV ALVRVCEPTY+  EVEAAGIQ+ DM YDDG SPP +VI+RWLALVD+V  KP+R +         S S   S P  +   S    A   S  E+  +       Q+ ++ + P P IAVHCVAGLGRAPVLVALALIEHGFGD SAVVE+IRS+RRGAINMRQLNYLEQY+KR + +CGGC +M
Sbjct:    1 MAPPQSAPKHFYS-SVPQTSAMAVLAGKPTFLAWGKLRFLLMDAPRDCNLSHYIREAKRHNVIALVRVCEPTYDTEEVEAAGIQVLDMGYDDGSSPPQDVIDRWLALVDDVFSKPARLTP--------SLSPAASYPGIQSGKSGVALARSMSWRENSHQGAAAASPQELEESEEPAPTIAVHCVAGLGRAPVLVALALIEHGFGDASAVVEFIRSKRRGAINMRQLNYLEQYQKREAVSCGGCSIM 238
The following BLAST results are available for this feature:
BLAST of NO05G00900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853694.17.100e-6960.73protein tyrosine phosphatase type iva protein 1 [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00900NO05G00900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00900.1NO05G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00900.1.cds1NO05G00900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00900.1 ID=NO05G00900.1|Name=NO05G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1418bp
ACCACAGGCCTTCAAACAGTCACGCAACCCGCCACGTACCAAACGTCAGC
CCTGGCGGCCTTTAGTAGAGGTGTGTGTGAGTGGACGAAGGAGAGTGCTC
CTCCTTCCTCCCGCCCACCTTAGCACCCTGGACGCGTCCGATCTCACCCG
AGCAGCAGCAGGCGCAGCCGCAGGCGCAGCAGCACCGAGTGCAGCAGCAC
CATCTCTGCAAGGAAGACTGAATCGCCAAGGCGTGCACGAATTCCCGCCT
TCTCCCTTCGACTATACCTCTATAACCGCGACCTCCACGTCAACCACGCA
TCAGGATGGCTCCTCCGCAGACATCCTCCCAATCCCTCCACTCCAACTCC
TTTCCCTACACCTCCACCACCGCCGTCCTGGCCGGCAAACCCACCTTTAT
CGTGTGGGGGAAACTCCGATTTCTTCTCATGGATGCCCCGCGCGATAGCA
ATTTGGCGCAATACTTGCGTGTAGCCAAGCACTACAATGTGACGGCTTTG
GTGCGTGTCTGCGAGCCGACATACAACGTAGCGGAGGTAGAGGCGGCAGG
TATTCAGATGTATGACATGGCATATGATGATGGGTGCAGTCCTCCTCCAG
AGGTTATTGAGAGGTGGCTTGCTCTCGTAGACGAGGTGTTGATTAAGCCC
TCTCGTCGCTCCTCCCTCTCCTACTCCAATGGTAATGGTAGTGGATCCAC
TACTACCAGCACACCTACCTCCCGCGACTCCTCCTCTGCCACCATTCCCG
CCATTATGGCCTCTCCCATTGAATCCCAGCAAGAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCTTCCTCCTCCCGCGATCGCCGTGCATTGTGTGGC
AGGACTGGGCCGCGCGCCTGTCCTCGTCGCCCTGGCTTTGATTGAACATG
GGTTCGGCGACCCTTCGGCGGTGGTGGAATATATTCGGTCGCAGCGACGA
GGGGCGATTAACATGCGGCAATTGAATTATCTGGAGCAATACAAGAAGAG
GGGGTCGGAGACGTGTGGGGGATGCTGTGTCATGTGAATTGACTCCAAGA
GAGGGGGAGAAAGAAAGAGAGGAGGGGGGGAAAGGCGGCCTTTTTTGAGA
GGAAGGAAAGACGTTAGTTTTGATGCAGAGAGAGGAAAGAAAACTCAGTG
GGTTGTGGAGGGTGCTCTCTTTTGAGGTATGGCGAGCGCATATATTGAGT
CGATTAATCCATATCCATGAGTGGAGGTGTGGGTGTATGGTGCTGCTGCT
GCTGGTGCTGGTACGTACAAGATCAAGCATAAAGAGACAGTACACATAAT
CATGTATGAGAGGTGGAGATAGCTAATTTCGGTGCATTCTAGTCTCACCT
GAGGTTTCCAAATTGAATAGGAACAAGGGCAACGGAAAAAGCAAGCATAG
AGAGAGGGGAAGAAGTTT
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protein sequence of NO05G00900.1

>NO05G00900.1-protein ID=NO05G00900.1-protein|Name=NO05G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MAPPQTSSQSLHSNSFPYTSTTAVLAGKPTFIVWGKLRFLLMDAPRDSNL
AQYLRVAKHYNVTALVRVCEPTYNVAEVEAAGIQMYDMAYDDGCSPPPEV
IERWLALVDEVLIKPSRRSSLSYSNGNGSGSTTTSTPTSRDSSSATIPAI
MASPIESQQEQQQQQQQQQQLPPPAIAVHCVAGLGRAPVLVALALIEHGF
GDPSAVVEYIRSQRRGAINMRQLNYLEQYKKRGSETCGGCCVM*
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mRNA from alignment at chr5:278235..279652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00900.1 ID=NO05G00900.1|Name=NO05G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1418bp|location=Sequence derived from alignment at chr5:278235..279652- (Nannochloropsis oceanica)
ACCACAGGCCTTCAAACAGTCACGCAACCCGCCACGTACCAAACGTCAGC
CCTGGCGGCCTTTAGTAGAGGTGTGTGTGAGTGGACGAAGGAGAGTGCTC
CTCCTTCCTCCCGCCCACCTTAGCACCCTGGACGCGTCCGATCTCACCCG
AGCAGCAGCAGGCGCAGCCGCAGGCGCAGCAGCACCGAGTGCAGCAGCAC
CATCTCTGCAAGGAAGACTGAATCGCCAAGGCGTGCACGAATTCCCGCCT
TCTCCCTTCGACTATACCTCTATAACCGCGACCTCCACGTCAACCACGCA
TCAGGATGGCTCCTCCGCAGACATCCTCCCAATCCCTCCACTCCAACTCC
TTTCCCTACACCTCCACCACCGCCGTCCTGGCCGGCAAACCCACCTTTAT
CGTGTGGGGGAAACTCCGATTTCTTCTCATGGATGCCCCGCGCGATAGCA
ATTTGGCGCAATACTTGCGTGTAGCCAAGCACTACAATGTGACGGCTTTG
GTGCGTGTCTGCGAGCCGACATACAACGTAGCGGAGGTAGAGGCGGCAGG
TATTCAGATGTATGACATGGCATATGATGATGGGTGCAGTCCTCCTCCAG
AGGTTATTGAGAGGTGGCTTGCTCTCGTAGACGAGGTGTTGATTAAGCCC
TCTCGTCGCTCCTCCCTCTCCTACTCCAATGGTAATGGTAGTGGATCCAC
TACTACCAGCACACCTACCTCCCGCGACTCCTCCTCTGCCACCATTCCCG
CCATTATGGCCTCTCCCATTGAATCCCAGCAAGAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCTTCCTCCTCCCGCGATCGCCGTGCATTGTGTGGC
AGGACTGGGCCGCGCGCCTGTCCTCGTCGCCCTGGCTTTGATTGAACATG
GGTTCGGCGACCCTTCGGCGGTGGTGGAATATATTCGGTCGCAGCGACGA
GGGGCGATTAACATGCGGCAATTGAATTATCTGGAGCAATACAAGAAGAG
GGGGTCGGAGACGTGTGGGGGATGCTGTGTCATGTGAATTGACTCCAAGA
GAGGGGGAGAAAGAAAGAGAGGAGGGGGGGAAAGGCGGCCTTTTTTGAGA
GGAAGGAAAGACGTTAGTTTTGATGCAGAGAGAGGAAAGAAAACTCAGTG
GGTTGTGGAGGGTGCTCTCTTTTGAGGTATGGCGAGCGCATATATTGAGT
CGATTAATCCATATCCATGAGTGGAGGTGTGGGTGTATGGTGCTGCTGCT
GCTGGTGCTGGTACGTACAAGATCAAGCATAAAGAGACAGTACACATAAT
CATGTATGAGAGGTGGAGATAGCTAATTTCGGTGCATTCTAGTCTCACCT
GAGGTTTCCAAATTGAATAGGAACAAGGGCAACGGAAAAAGCAAGCATAG
AGAGAGGGGAAGAAGTTT
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Coding sequence (CDS) from alignment at chr5:278235..279652-

>NO05G00900.1 ID=NO05G00900.1|Name=NO05G00900.1|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at chr5:278235..279652- (Nannochloropsis oceanica)
ATGGCTCCTCCGCAGACATCCTCCCAATCCCTCCACTCCAACTCCTTTCC
CTACACCTCCACCACCGCCGTCCTGGCCGGCAAACCCACCTTTATCGTGT
GGGGGAAACTCCGATTTCTTCTCATGGATGCCCCGCGCGATAGCAATTTG
GCGCAATACTTGCGTGTAGCCAAGCACTACAATGTGACGGCTTTGGTGCG
TGTCTGCGAGCCGACATACAACGTAGCGGAGGTAGAGGCGGCAGGTATTC
AGATGTATGACATGGCATATGATGATGGGTGCAGTCCTCCTCCAGAGGTT
ATTGAGAGGTGGCTTGCTCTCGTAGACGAGGTGTTGATTAAGCCCTCTCG
TCGCTCCTCCCTCTCCTACTCCAATGGTAATGGTAGTGGATCCACTACTA
CCAGCACACCTACCTCCCGCGACTCCTCCTCTGCCACCATTCCCGCCATT
ATGGCCTCTCCCATTGAATCCCAGCAAGAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCTTCCTCCTCCCGCGATCGCCGTGCATTGTGTGGCAGGAC
TGGGCCGCGCGCCTGTCCTCGTCGCCCTGGCTTTGATTGAACATGGGTTC
GGCGACCCTTCGGCGGTGGTGGAATATATTCGGTCGCAGCGACGAGGGGC
GATTAACATGCGGCAATTGAATTATCTGGAGCAATACAAGAAGAGGGGGT
CGGAGACGTGTGGGGGATGCTGTGTCATGTGA
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Synonyms
Publications