NO05G00890.1, NO05G00890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00890.1
Unique NameNO05G00890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2258
Alignment locationchr5:274769..277849 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:274769..277849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00890.1 vs.
Match: XP_005852445.1 (hypothetical protein NGA_0680300, partial [Nannochloropsis gaditana CCMP526]; EKU23386.1 hypothetical protein NGA_0680300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 189.1 bits (479), Expect = 4.900e-44
Identity = 133/271 (49.08%), Postives = 160/271 (59.04%), Query Frame = 0 
Query:    1 MGKAKKARALRNARHDPLGLGGSPAAAARGATMSSPAAGRACMGQKQQYKAQKLLEDLRSPDLIRKEAAVMAMAQLLAVGDSPEDGEEEEEDEKGMDGTGAGGSAGSSKNKSTSRFRALIHKLVDGGAVPLLMERMFDTSSAVTLHAAGALRNMASLHDPRLATQMIKEDVFTALLGLLDKVGQGGFEAAPLITQILGTMAGLCETSEVAGQVLSRHQGLEALLDVMGTYVEEM--------EREGRKDGEVEEGE------GEEEEVEEE 258
            MGKAKKARA R+ARHDP+G    P+     ++  +           Q  KA KLLE+LRSPDL RKEAAV+AMAQLLA GD   DG+EE     G++G           +K ++RFRALIHKLVDGGAV LLMERMFDT+S V LH AGALRNMASL D R+ +QM++  V TA+LGLL K  +       + TQ LG +  +CE  E A Q L R +GL  +L VM TYV  M         REG + G  E G       G  E V EE
Sbjct:    1 MGKAKKARASRHARHDPVGF---PSGRTARSSSCADTEQETRQHAHQHQKAHKLLEELRSPDLARKEAAVVAMAQLLAAGDV--DGDEEVA---GLNGNERADRGPMRASKGSARFRALIHKLVDGGAVDLLMERMFDTASTVRLHGAGALRNMASLRDRRVTSQMVQAGVLTAVLGLLQKQEKEIIRDTAITTQGLGVLVAVCEGREAAKQCLVRQEGLRLVLAVMRTYVGAMGTKGEGTRHREGMQAGTGEAGSMVIQQCGHAERVGEE 263
The following BLAST results are available for this feature:
BLAST of NO05G00890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852445.14.900e-4449.08hypothetical protein NGA_0680300, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00890NO05G00890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00890.1NO05G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00890.1.cds1NO05G00890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00890.1.cds2NO05G00890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00890.1.cds3NO05G00890.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00890.1.cds4NO05G00890.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00890.1 ID=NO05G00890.1|Name=NO05G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2258bp
CATCAGGGCGAAGGCTAGCCATGGGCAAGGCGAAAAAAGCGCGGGCCTTA
CGCAACGCCCGGCACGACCCTTTGGGGTTGGGTGGCTCCCCGGCTGCCGC
CGCACGAGGGGCTACCATGAGTTCCCCTGCAGCTGGCCGCGCGTGCATGG
GACAAAAGCAACAATATAAGGCACAAAAGCTCTTAGAAGATCTGCGGAGC
CCAGATTTGATACGGAAAGAAGCAGCCGTGATGGCCATGGCTCAGTTGCT
GGCTGTGGGGGATAGTCCAGAGGATGGCGAGGAGGAGGAAGAGGATGAGA
AAGGGATGGATGGCACAGGTGCAGGCGGAAGCGCGGGCAGCAGCAAAAAT
AAAAGTACCAGTCGGTTCCGGGCCTTGATCCACAAGTTGGTGGATGGTGG
CGCGGTGCCTTTGTTGATGGAGCGGATGTTTGATACGTCCTCTGCGGTGA
CGCTTCATGCGGCGGGGGCGTTGCGCAACATGGCCTCCCTCCACGACCCC
CGCCTAGCCACCCAAATGATCAAAGAAGACGTGTTCACCGCCCTCCTCGG
CCTGCTCGACAAAGTAGGGCAGGGTGGGTTTGAGGCAGCGCCCCTGATCA
CACAGATATTGGGGACCATGGCGGGATTATGTGAAACGAGCGAGGTGGCA
GGACAGGTGCTGTCGCGACACCAAGGACTCGAGGCATTGTTGGATGTGAT
GGGGACGTACGTGGAGGAGATGGAAAGGGAGGGAAGGAAGGATGGCGAGG
TGGAGGAGGGGGAAGGGGAGGAGGAGGAAGTAGAAGAGGAGGAGCAGGGG
GGGGGGAGGACATGGTGGTGGAGGAGGGGGCAAGGAGCAGAGGCAAGGGG
AGGGGTCGAAAGAGAGAAAGCAGCAAGAAAATCACACACCTTTGCCCTTC
CGCCGGAGCAGCTGCTGATGATGGTGCTAAAGGACGGAGTACGGGAGGGC
TTAGAGTGGGAGGCCGGGTTACTAGGAGCTGTGGTGGCTGATGTGGAACG
AGTGAGAGACGCCAAGGCCGCAGTTGAGAGGGAGAAGAAGGCGAGGAGGA
AGGAGGGAGAGGAGGAGGAAGGAGATGGGGGACAGGAGGAGGAAGGGGAA
AAGAAGGGAGAGCAGAGGAAAGGAGATGAAGAAATGGATACGGAAGAAGT
AGCAACCGCCGGAAGGGGGCGAGGGGAAGGGGGAGGTGCCGAGGGAGGGA
GGGGGGGGAGGCGCGACTTACGGATGGCACGGAGGGGGGCTCGGAAGGAA
TTGGAAGAGGCTCAAGCTTCTCTAGCAGCAGCAGAGGAAGAGTGGGAGGA
GAAGGTGGTGATCACTCTCAGTCTTGCATTGGATGTAGTGGCTACCTTGG
TGGGGGAGGGGGGAGGGGGGGACGAGAATGACGACGACGACGAGGAGGAG
GAGGAGGAGGAGTGGGATTCGGACCAGGACGAGGATCGAATGGAGGCCAT
GGCGGTAGAGATGATAACGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAAGGAAGGCAGGGAATGAGGACGAGGAAGCAAAGAAGATGAGG
ACTTTGGCTATTATCCCCATCCCTCTGATTAGACAAGTGTTGGAATTGAG
GTCACGGGCGCTGCTGGTGTTGGGGGGACTGCTCACAGAGATGCCTTCAT
CGATGATTGAAACGGAGGGAGCGGCGGCGTGGACGGCCTTGCTGGAGATG
GGGGAGGAAGGAATGGAGGAGGAGAGAAGGGGCCATGCTCCGTGGTACTG
CCGAGGGGAGGAGCCATGCCTTGGGCTCCTGACTGGTGTGATGTGTGCCT
TTGTCAGGAGGAGGGGGCAGGGAGGGACGGAAGGAGGACGGGCAGGCGGA
AAAGAGGTTGAGTTGCTGGCACGGATGGTGAGGACGTCCCCCTATTTTGA
GGTGAGGGTTAATGCGGCTGCGATTCTGGGTTGTCTATGCCCTCCCTCTT
CCTCGTTCTCCCTCGTGTCCTCGGTAGGAGCAACCTTAAAGGAGGCATTG
CTGACCGAGACGCACGTGCTGGGAGAAGCAGCTGTATTGAATGCGATCAT
GGACTTGTTTTCTGATGACGACCAAGAGAGGGATCGAATCTTCCAGAAAC
ATCTAGGATTCTTGACGGTGTTGAAGGAGGTGCTGCCTGCGTTTCGGTTG
AAGTGTAAAGTGGAGGCGGGGAAGCACGGGAAAGATGCTGTTGGGCACGT
GAAAGAGACGGCATTGAATACGGCCCGATTCATCAAGTACAAGGAAAAGA
CGCTTTAG
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protein sequence of NO05G00890.1

>NO05G00890.1-protein ID=NO05G00890.1-protein|Name=NO05G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=746bp
MGKAKKARALRNARHDPLGLGGSPAAAARGATMSSPAAGRACMGQKQQYK
AQKLLEDLRSPDLIRKEAAVMAMAQLLAVGDSPEDGEEEEEDEKGMDGTG
AGGSAGSSKNKSTSRFRALIHKLVDGGAVPLLMERMFDTSSAVTLHAAGA
LRNMASLHDPRLATQMIKEDVFTALLGLLDKVGQGGFEAAPLITQILGTM
AGLCETSEVAGQVLSRHQGLEALLDVMGTYVEEMEREGRKDGEVEEGEGE
EEEVEEEEQGGGRTWWWRRGQGAEARGGVEREKAARKSHTFALPPEQLLM
MVLKDGVREGLEWEAGLLGAVVADVERVRDAKAAVEREKKARRKEGEEEE
GDGGQEEEGEKKGEQRKGDEEMDTEEVATAGRGRGEGGGAEGGRGGRRDL
RMARRGARKELEEAQASLAAAEEEWEEKVVITLSLALDVVATLVGEGGGG
DENDDDDEEEEEEEWDSDQDEDRMEAMAVEMITAGREGGREGGREGRKAG
NEDEEAKKMRTLAIIPIPLIRQVLELRSRALLVLGGLLTEMPSSMIETEG
AAAWTALLEMGEEGMEEERRGHAPWYCRGEEPCLGLLTGVMCAFVRRRGQ
GGTEGGRAGGKEVELLARMVRTSPYFEVRVNAAAILGCLCPPSSSFSLVS
SVGATLKEALLTETHVLGEAAVLNAIMDLFSDDDQERDRIFQKHLGFLTV
LKEVLPAFRLKCKVEAGKHGKDAVGHVKETALNTARFIKYKEKTL*
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mRNA from alignment at chr5:274769..277849+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00890.1 ID=NO05G00890.1|Name=NO05G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=3081bp|location=Sequence derived from alignment at chr5:274769..277849+ (Nannochloropsis oceanica)
CATCAGGGCGAAGGCTAGCCATGGGCAAGGCGAAAAAAGCGCGGGCCTTA
CGCAACGCCCGGCACGACCCTTTGGGGTTGGGTGGCTCCCCGGCTGCCGC
CGCACGAGGGGCTACCATGAGTTCCCCTGCAGCTGGCCGCGCGTGCATGG
GACAAAAGCAACAATATAAGGCACAAAAGCTCTTAGAAGATCTGCGGAGC
CCAGATTTGATACGGAAAGAAGCAGCCGTGATGGCCATGGCTCAGTTGCT
GGCTGTGGGGGATAGTCCAGAGGATGGCGAGGAGGAGGAAGAGGATGAGA
AAGGGATGGATGGCACAGGTGCAGGCGGAAGCGCGGGCAGCAGCAAAAAT
AAAAGTACCAGTCGGTTCCGGGCCTTGATCCACAAGTTGGTGGATGGTGG
CGCGGTGCCTTTGTTGATGGAGCGGATGTTTGATACGTCCTCTGCGGTGA
CGCTTCATGCGGCGGGGGCGTTGCGGTACGTACACGCGCATGGATAAAGG
GTTGGAGACATTAGGGGGAAAAGAGTATTGCTGTAAATTTTGCCGAAAAA
AATCTGTGTTTGTGTATGCGTGAGTCAAGGATGTAACAAGATATTTGCTA
CTCTTGAAGCGTCTCCTCGGAGCCCTTCTGATGACATCTTATCCACCAAG
ATCGCTGAGACCACACACAAGCACGCACTCCACCCTTCGTTTTCTTTGTT
ATTTCCTCCGCCCCCTCTCCCTACAGCCAGTCCCTGATTCACCCACTCAC
ATCTACTCACACCCCTCCCTCCCTCCCTCCCTTCCTCTCTCCCTCCTTCC
TACAGCAACATGGCCTCCCTCCACGACCCCCGCCTAGCCACCCAAATGAT
CAAAGAAGACGTGTTCACCGCCCTCCTCGGCCTGCTCGACAAAGTAGGGC
AGGGTGGGTTTGAGGCAGCGCCCCTGATCACACAGATATTGGGGACCATG
GCGGGATTATGTGAAACGAGCGAGGTGGCAGGACAGGTGCTGTCGCGACA
CCAAGGACTCGAGGCATTGTTGGATGTGATGGGGACGTACGTGGAGGAGA
TGGAAAGGGAGGGAAGGAAGGATGGCGAGGTGGAGGAGGGGGAAGGGGAG
GAGGAGGAAGTAGAAGAGGAGGAGCAGGGGGGGGGGAGGACATGGTGGTG
GAGGAGGGGGCAAGGAGCAGAGGCAAGGGGAGGGGTCGAAAGAGAGAAAG
CAGCAAGAAAATCACACACCTTTGCCCTTCCGGTACCGCCATGACCAAGC
AAGACAGAATCAAAGCAGCACAAGCAATCGTGGCCTTGGGTGCTCAAACT
CTCCACGCCGCCACCCGCGGCAACTACCCCCTCGTCGACCAGCTTTGCCG
ACACCCAGTCATCCTCCCCTTCCTCACCTCCCTCCTCTCCTCCCATCCCC
TTTTCCCCTCGTTCCCCCCTGCCCTCACTCCCGCCGCCCGCCTCCATCTT
GCCGGATGCTTGGCCCATGTGTACCTTGTCCTCCTCCCTGGGCGTTTCAC
GGACCACAAGAACAAACCCTTCCCTTTCTTGCCTCAGCCGGAGCAGCTGC
TGATGATGGTGCTAAAGGACGGAGTACGGGAGGGCTTAGAGTGGGAGGCC
GGGTTACTAGGAGCTGTGGTGGCTGATGTGGAACGAGTGAGAGACGCCAA
GGCCGCAGTTGAGAGGGAGAAGAAGGCGAGGAGGAAGGAGGGAGAGGAGG
AGGAAGGAGATGGGGGACAGGAGGAGGAAGGGGAAAAGAAGGGAGAGCAG
AGGAAAGGAGATGAAGAAATGGATACGGAAGAAGTAGCAACCGCCGGAAG
GGGGCGAGGGGAAGGGGGAGGTGCCGAGGGAGGGAGGGGGGGGAGGCGCG
ACTTACGGATGGCACGGAGGGGGGCTCGGAAGGAATTGGAAGAGGCTCAA
GCTTCTCTAGCAGCAGCAGAGGAAGAGTGGGAGGAGAAGGTGGTGATCAC
TCTCAGTCTTGCATTGGATGTAGTGGCTACCTTGGTGGGGGAGGGGGGAG
GGGGGGACGAGAATGACGACGACGACGAGGAGGAGGAGGAGGAGGAGTGG
GATTCGGACCAGGACGAGGATCGAATGGAGGCCATGGCGGTAGAGATGAT
AACGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGG
TATCGGTGACACGACAGCGGCTTTTCTCCTTGCTTGTGAGCACGGGTGTG
CTGTCTCGTACATTCCACGTGGCGCAGTCACTCTCCAAGTGCTTGCTACA
AGCTTTGGCCTCCCTCCCTCCCTTCATCCCCCCCCCTCCTCTTTCTCCTC
CTCCACCACTTCTACGAGCACTACCCCCACCTCCGAGGCAGGGAATGAGG
ACGAGGAAGCAAAGAAGATGAGGACTTTGGCTATTATCCCCATCCCTCTG
ATTAGACAAGTGTTGGAATTGAGGTCACGGGCGCTGCTGGTGTTGGGGGG
ACTGCTCACAGAGATGCCTTCATCGATGATTGAAACGGAGGGAGCGGCGG
CGTGGACGGCCTTGCTGGAGATGGGGGAGGAAGGAATGGAGGAGGAGAGA
AGGGGCCATGCTCCGTGGTACTGCCGAGGGGAGGAGCCATGCCTTGGGCT
CCTGACTGGTGTGATGTGTGCCTTTGTCAGGAGGAGGGGGCAGGGAGGGA
CGGAAGGAGGACGGGCAGGCGGAAAAGAGGTTGAGTTGCTGGCACGGATG
GTGAGGACGTCCCCCTATTTTGAGGTGAGGGTTAATGCGGCTGCGATTCT
GGGTTGTCTATGCCCTCCCTCTTCCTCGTTCTCCCTCGTGTCCTCGGTAG
GAGCAACCTTAAAGGAGGCATTGCTGACCGAGACGCACGTGCTGGGAGAA
GCAGCTGTATTGAATGCGATCATGGACTTGTTTTCTGATGACGACCAAGA
GAGGGATCGAATCTTCCAGAAACATCTAGGATTCTTGACGGTGTTGAAGG
AGGTGCTGCCTGCGTTTCGGTTGAAGTGTAAAGTGGAGGCGGGGAAGCAC
GGGAAAGATGCTGTTGGGCACGTGAAAGAGACGGCATTGAATACGGCCCG
ATTCATCAAGTACAAGGAAAAGACGCTTTAG
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Coding sequence (CDS) from alignment at chr5:274769..277849+

>NO05G00890.1 ID=NO05G00890.1|Name=NO05G00890.1|organism=Nannochloropsis oceanica|type=CDS|length=2238bp|location=Sequence derived from alignment at chr5:274769..277849+ (Nannochloropsis oceanica)
ATGGGCAAGGCGAAAAAAGCGCGGGCCTTACGCAACGCCCGGCACGACCC
TTTGGGGTTGGGTGGCTCCCCGGCTGCCGCCGCACGAGGGGCTACCATGA
GTTCCCCTGCAGCTGGCCGCGCGTGCATGGGACAAAAGCAACAATATAAG
GCACAAAAGCTCTTAGAAGATCTGCGGAGCCCAGATTTGATACGGAAAGA
AGCAGCCGTGATGGCCATGGCTCAGTTGCTGGCTGTGGGGGATAGTCCAG
AGGATGGCGAGGAGGAGGAAGAGGATGAGAAAGGGATGGATGGCACAGGT
GCAGGCGGAAGCGCGGGCAGCAGCAAAAATAAAAGTACCAGTCGGTTCCG
GGCCTTGATCCACAAGTTGGTGGATGGTGGCGCGGTGCCTTTGTTGATGG
AGCGGATGTTTGATACGTCCTCTGCGGTGACGCTTCATGCGGCGGGGGCG
TTGCGCAACATGGCCTCCCTCCACGACCCCCGCCTAGCCACCCAAATGAT
CAAAGAAGACGTGTTCACCGCCCTCCTCGGCCTGCTCGACAAAGTAGGGC
AGGGTGGGTTTGAGGCAGCGCCCCTGATCACACAGATATTGGGGACCATG
GCGGGATTATGTGAAACGAGCGAGGTGGCAGGACAGGTGCTGTCGCGACA
CCAAGGACTCGAGGCATTGTTGGATGTGATGGGGACGTACGTGGAGGAGA
TGGAAAGGGAGGGAAGGAAGGATGGCGAGGTGGAGGAGGGGGAAGGGGAG
GAGGAGGAAGTAGAAGAGGAGGAGCAGGGGGGGGGGAGGACATGGTGGTG
GAGGAGGGGGCAAGGAGCAGAGGCAAGGGGAGGGGTCGAAAGAGAGAAAG
CAGCAAGAAAATCACACACCTTTGCCCTTCCGCCGGAGCAGCTGCTGATG
ATGGTGCTAAAGGACGGAGTACGGGAGGGCTTAGAGTGGGAGGCCGGGTT
ACTAGGAGCTGTGGTGGCTGATGTGGAACGAGTGAGAGACGCCAAGGCCG
CAGTTGAGAGGGAGAAGAAGGCGAGGAGGAAGGAGGGAGAGGAGGAGGAA
GGAGATGGGGGACAGGAGGAGGAAGGGGAAAAGAAGGGAGAGCAGAGGAA
AGGAGATGAAGAAATGGATACGGAAGAAGTAGCAACCGCCGGAAGGGGGC
GAGGGGAAGGGGGAGGTGCCGAGGGAGGGAGGGGGGGGAGGCGCGACTTA
CGGATGGCACGGAGGGGGGCTCGGAAGGAATTGGAAGAGGCTCAAGCTTC
TCTAGCAGCAGCAGAGGAAGAGTGGGAGGAGAAGGTGGTGATCACTCTCA
GTCTTGCATTGGATGTAGTGGCTACCTTGGTGGGGGAGGGGGGAGGGGGG
GACGAGAATGACGACGACGACGAGGAGGAGGAGGAGGAGGAGTGGGATTC
GGACCAGGACGAGGATCGAATGGAGGCCATGGCGGTAGAGATGATAACGG
CAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGGCAGGG
AATGAGGACGAGGAAGCAAAGAAGATGAGGACTTTGGCTATTATCCCCAT
CCCTCTGATTAGACAAGTGTTGGAATTGAGGTCACGGGCGCTGCTGGTGT
TGGGGGGACTGCTCACAGAGATGCCTTCATCGATGATTGAAACGGAGGGA
GCGGCGGCGTGGACGGCCTTGCTGGAGATGGGGGAGGAAGGAATGGAGGA
GGAGAGAAGGGGCCATGCTCCGTGGTACTGCCGAGGGGAGGAGCCATGCC
TTGGGCTCCTGACTGGTGTGATGTGTGCCTTTGTCAGGAGGAGGGGGCAG
GGAGGGACGGAAGGAGGACGGGCAGGCGGAAAAGAGGTTGAGTTGCTGGC
ACGGATGGTGAGGACGTCCCCCTATTTTGAGGTGAGGGTTAATGCGGCTG
CGATTCTGGGTTGTCTATGCCCTCCCTCTTCCTCGTTCTCCCTCGTGTCC
TCGGTAGGAGCAACCTTAAAGGAGGCATTGCTGACCGAGACGCACGTGCT
GGGAGAAGCAGCTGTATTGAATGCGATCATGGACTTGTTTTCTGATGACG
ACCAAGAGAGGGATCGAATCTTCCAGAAACATCTAGGATTCTTGACGGTG
TTGAAGGAGGTGCTGCCTGCGTTTCGGTTGAAGTGTAAAGTGGAGGCGGG
GAAGCACGGGAAAGATGCTGTTGGGCACGTGAAAGAGACGGCATTGAATA
CGGCCCGATTCATCAAGTACAAGGAAAAGACGCTTTAG
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Synonyms
Publications