NO05G00550.1, NO05G00550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00550.1
Unique NameNO05G00550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1428
Alignment locationchr5:191369..192925 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:191369..192925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G00550.1 vs.
Match: EWM28336.1 (hypothetical protein Naga_100109g12 [Nannochloropsis gaditana])

HSP 1 Score: 563.5 bits (1451), Expect = 6.100e-157
Identity = 297/459 (64.71%), Postives = 348/459 (75.82%), Query Frame = 0
Query:   34 PCPPC--RRHHIPILMSGN----NDYGGDDPFAIRILQPNQLRIIRVIGEQRLTIEEETEKRDGSGPRGAFGRIRNKKS-TEGQSQTSREMKTMGVGVRLFEAVDSQTGERLIMKEFLPMMRNVAMGEVELYRYLHHWVQTNHPSWQPSDIPIVPFHGYLQTGPEVEDPSFVYDWAERFGSSVPPPLAGNTWVVLRTPGLITLTSLPRLALEREGGGGGKATK---------GWLGKLL---FPDVYKTRIAYLKNLMAGAIDALSLLHEAGVCHGALSPSTLLVSTADLREGGREGGMEVWLSDLGFAKNVLSQEKVDFEGLVKRDWKGCSYSLLEVFLRLMAEDEEEEEKKQGEGLGGVEGGLGRWEEGFGLPFAQVTAGSLQGVTEARFGGDVGVGLRGLVSNERVFKKAVECLDEEGGAGWVLLNDMANVERLMMGEERGVYGVGERLLGSGFFD 474
            PC P   RR   P+ +S N    N    DDPF I +L+PNQLRI+R IGEQRLT+EEETE RDG+GPRGAFGRIRNKKS TE  +Q  REM+ MGVG RLFEAVD++TG+ L++KEFLPMM+NVAMGEVELYRYL+ W + N P+W PSD+P+VP HGYL TGPEVEDPSFV  W +RFG S+PPP+ GN WV +R   L+ LTS+PRLAL       G A K         GW G+L     PD    R+AYLKN+  G+I A+SLLH+AGV HGA+SPST+LVSTADLREGGREGGMEVWLS+LGFA NVLSQ  +DFEGLVKRDWKGCSY+LLEVFLRL+AE+EE      GEG GG   GLG++EEGF LPFAQV AG LQ VTE RF GDV VGLR LV+NER +++AV CLD +GGAGWVLL+DMAN  RL + +E GVYGVG RLL S F++
Sbjct:   70 PCRPISRRRPRRPLALSANDYDENRRKTDDPFTIPVLEPNQLRIVRPIGEQRLTVEEETETRDGAGPRGAFGRIRNKKSRTEQPAQIRREMRNMGVGARLFEAVDTRTGQALVLKEFLPMMKNVAMGEVELYRYLYDWTRRNQPAWLPSDLPLVPLHGYLTTGPEVEDPSFVQAWRDRFGPSLPPPVPGNVWVAVRAARLLPLTSVPRLAL-------GDAEKFPLASPGGAGWWGRLWGKGGPD----RVAYLKNVFEGSITAVSLLHQAGVVHGAVSPSTILVSTADLREGGREGGMEVWLSELGFATNVLSQGTLDFEGLVKRDWKGCSYALLEVFLRLLAEEEE------GEGEGG--DGLGKYEEGFTLPFAQVEAGGLQAVTEERFKGDVSVGLRSLVNNERAYQQAVACLDAKGGAGWVLLHDMANAGRL-VAQEGGVYGVGPRLLASSFWE 508          
The following BLAST results are available for this feature:
BLAST of NO05G00550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28336.16.100e-15764.71hypothetical protein Naga_100109g12 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00550NO05G00550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00550.1NO05G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00550.1.cds1NO05G00550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00550.1.cds2NO05G00550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00550.1 ID=NO05G00550.1|Name=NO05G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp
ATGCTGCCATCCCGGTGGCAAGGCCGCTCCATCCTTTTTTTCTCTCTCCT
CCTTCCATCGTCGTTGGCATTCGTCGTCCGTCCTTCTTCGACGTTGGCGC
CGTGCCCACCATGCCGGCGCCACCATATCCCCATCTTGATGTCCGGAAAC
AATGATTATGGAGGAGACGACCCCTTTGCCATCCGAATCCTCCAACCCAA
TCAACTTCGCATCATCCGGGTCATTGGAGAGCAACGCCTCACGATCGAAG
AAGAGACCGAAAAGCGGGATGGTTCAGGTCCACGGGGTGCCTTTGGTCGG
ATTCGCAACAAAAAGTCGACTGAGGGACAATCACAAACAAGTCGAGAAAT
GAAAACCATGGGCGTGGGCGTTCGATTGTTCGAGGCGGTGGACTCGCAAA
CAGGAGAACGGCTTATTATGAAGGAATTCCTGCCTATGATGCGCAACGTG
GCCATGGGCGAGGTGGAGCTTTACCGGTACCTGCACCACTGGGTGCAGAC
CAACCACCCCTCCTGGCAGCCGTCCGATATCCCCATCGTCCCCTTCCACG
GCTACCTTCAAACAGGTCCTGAAGTGGAAGACCCTTCTTTCGTCTACGAC
TGGGCAGAACGTTTTGGTTCCTCCGTCCCTCCCCCCCTCGCGGGCAACAC
GTGGGTCGTGTTACGGACACCGGGGCTCATCACGCTTACTTCCCTCCCTC
GCCTGGCCTTGGAACGCGAAGGAGGAGGGGGAGGGAAGGCAACCAAGGGC
TGGTTGGGGAAATTATTGTTCCCTGATGTGTATAAAACGAGGATTGCATA
TTTGAAAAACTTAATGGCAGGTGCGATCGACGCACTTTCTCTGCTGCACG
AGGCCGGGGTCTGTCATGGCGCTCTCTCTCCCTCTACGCTCTTGGTCTCA
ACGGCCGATTTGAGGGAGGGAGGGAGGGAGGGAGGGATGGAGGTGTGGTT
GTCGGATTTGGGCTTTGCGAAGAATGTGCTGAGTCAGGAGAAGGTGGATT
TCGAGGGCCTGGTGAAGAGGGATTGGAAGGGGTGTTCCTACTCCTTGTTG
GAGGTTTTCTTGAGGCTCATGGCCGAGGACGAGGAGGAGGAGGAAAAGAA
GCAGGGAGAGGGCCTCGGAGGGGTTGAAGGGGGGTTGGGGCGATGGGAGG
AGGGGTTTGGATTGCCTTTTGCGCAGGTGACGGCGGGAAGCTTGCAGGGA
GTGACCGAGGCGAGATTTGGGGGCGATGTAGGGGTAGGGTTAAGAGGCCT
GGTGAGCAATGAGAGGGTGTTTAAGAAGGCCGTGGAGTGCCTGGACGAGG
AGGGGGGCGCGGGGTGGGTGTTATTGAATGACATGGCGAACGTCGAGAGG
TTGATGATGGGGGAAGAGAGAGGAGTGTACGGTGTGGGGGAGCGATTGTT
GGGGAGTGGTTTTTTTGACGATGATTAG
back to top

protein sequence of NO05G00550.1

>NO05G00550.1-protein ID=NO05G00550.1-protein|Name=NO05G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MLPSRWQGRSILFFSLLLPSSLAFVVRPSSTLAPCPPCRRHHIPILMSGN
NDYGGDDPFAIRILQPNQLRIIRVIGEQRLTIEEETEKRDGSGPRGAFGR
IRNKKSTEGQSQTSREMKTMGVGVRLFEAVDSQTGERLIMKEFLPMMRNV
AMGEVELYRYLHHWVQTNHPSWQPSDIPIVPFHGYLQTGPEVEDPSFVYD
WAERFGSSVPPPLAGNTWVVLRTPGLITLTSLPRLALEREGGGGGKATKG
WLGKLLFPDVYKTRIAYLKNLMAGAIDALSLLHEAGVCHGALSPSTLLVS
TADLREGGREGGMEVWLSDLGFAKNVLSQEKVDFEGLVKRDWKGCSYSLL
EVFLRLMAEDEEEEEKKQGEGLGGVEGGLGRWEEGFGLPFAQVTAGSLQG
VTEARFGGDVGVGLRGLVSNERVFKKAVECLDEEGGAGWVLLNDMANVER
LMMGEERGVYGVGERLLGSGFFDDD*
back to top

mRNA from alignment at chr5:191369..192925+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00550.1 ID=NO05G00550.1|Name=NO05G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp|location=Sequence derived from alignment at chr5:191369..192925+ (Nannochloropsis oceanica)
ATGCTGCCATCCCGGTGGCAAGGCCGCTCCATCCTTTTTTTCTCTCTCCT CCTTCCATCGTCGTTGGCATTCGTCGTCCGTCCTTCTTCGACGTTGGCGC CGTGCCCACCATGCCGGCGCCACCATATCCCCATCTTGATGTCCGGAAAC AATGATTATGGAGGAGACGACCCCTTTGCCATCCGAATCCTCCAACCCAA TCAACTTCGCATCATCCGGGTCATTGGAGAGCAACGCCTCACGATCGAAG AAGAGACCGAAAAGCGGGATGGTTCAGGTCCACGGGGTGCCTTTGGTCGG ATTCGCAACAAAAAGTCGACTGAGGGACAATCACAAACAAGTCGAGAAAT GAAAACCATGGGCGTGGGCGTTCGATTGTTCGAGGCGGTGGACTCGCAAA CAGGAGAACGGCTTATTATGAAGGAATTCCTGCCTATGATGCGCAACGTG GCCATGGGCGAGGTGGAGCTTTACCGGTAATAATCAAGACTGGATGTCAC ATACTGTTTCTTCTCTCTGATCTGCTGAGTTTAAAGTTCTTAAATCGTGA CTCAAATTGTTGTCTCAATACTCAACCACCCTTCCCTCCCTCACTCCCTC CCTAGGTACCTGCACCACTGGGTGCAGACCAACCACCCCTCCTGGCAGCC GTCCGATATCCCCATCGTCCCCTTCCACGGCTACCTTCAAACAGGTCCTG AAGTGGAAGACCCTTCTTTCGTCTACGACTGGGCAGAACGTTTTGGTTCC TCCGTCCCTCCCCCCCTCGCGGGCAACACGTGGGTCGTGTTACGGACACC GGGGCTCATCACGCTTACTTCCCTCCCTCGCCTGGCCTTGGAACGCGAAG GAGGAGGGGGAGGGAAGGCAACCAAGGGCTGGTTGGGGAAATTATTGTTC CCTGATGTGTATAAAACGAGGATTGCATATTTGAAAAACTTAATGGCAGG TGCGATCGACGCACTTTCTCTGCTGCACGAGGCCGGGGTCTGTCATGGCG CTCTCTCTCCCTCTACGCTCTTGGTCTCAACGGCCGATTTGAGGGAGGGA GGGAGGGAGGGAGGGATGGAGGTGTGGTTGTCGGATTTGGGCTTTGCGAA GAATGTGCTGAGTCAGGAGAAGGTGGATTTCGAGGGCCTGGTGAAGAGGG ATTGGAAGGGGTGTTCCTACTCCTTGTTGGAGGTTTTCTTGAGGCTCATG GCCGAGGACGAGGAGGAGGAGGAAAAGAAGCAGGGAGAGGGCCTCGGAGG GGTTGAAGGGGGGTTGGGGCGATGGGAGGAGGGGTTTGGATTGCCTTTTG CGCAGGTGACGGCGGGAAGCTTGCAGGGAGTGACCGAGGCGAGATTTGGG GGCGATGTAGGGGTAGGGTTAAGAGGCCTGGTGAGCAATGAGAGGGTGTT TAAGAAGGCCGTGGAGTGCCTGGACGAGGAGGGGGGCGCGGGGTGGGTGT TATTGAATGACATGGCGAACGTCGAGAGGTTGATGATGGGGGAAGAGAGA GGAGTGTACGGTGTGGGGGAGCGATTGTTGGGGAGTGGTTTTTTTGACGA TGATTAG
back to top

Coding sequence (CDS) from alignment at chr5:191369..192925+

>NO05G00550.1 ID=NO05G00550.1|Name=NO05G00550.1|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at chr5:191369..192925+ (Nannochloropsis oceanica)
ATGCTGCCATCCCGGTGGCAAGGCCGCTCCATCCTTTTTTTCTCTCTCCT
CCTTCCATCGTCGTTGGCATTCGTCGTCCGTCCTTCTTCGACGTTGGCGC
CGTGCCCACCATGCCGGCGCCACCATATCCCCATCTTGATGTCCGGAAAC
AATGATTATGGAGGAGACGACCCCTTTGCCATCCGAATCCTCCAACCCAA
TCAACTTCGCATCATCCGGGTCATTGGAGAGCAACGCCTCACGATCGAAG
AAGAGACCGAAAAGCGGGATGGTTCAGGTCCACGGGGTGCCTTTGGTCGG
ATTCGCAACAAAAAGTCGACTGAGGGACAATCACAAACAAGTCGAGAAAT
GAAAACCATGGGCGTGGGCGTTCGATTGTTCGAGGCGGTGGACTCGCAAA
CAGGAGAACGGCTTATTATGAAGGAATTCCTGCCTATGATGCGCAACGTG
GCCATGGGCGAGGTGGAGCTTTACCGGTACCTGCACCACTGGGTGCAGAC
CAACCACCCCTCCTGGCAGCCGTCCGATATCCCCATCGTCCCCTTCCACG
GCTACCTTCAAACAGGTCCTGAAGTGGAAGACCCTTCTTTCGTCTACGAC
TGGGCAGAACGTTTTGGTTCCTCCGTCCCTCCCCCCCTCGCGGGCAACAC
GTGGGTCGTGTTACGGACACCGGGGCTCATCACGCTTACTTCCCTCCCTC
GCCTGGCCTTGGAACGCGAAGGAGGAGGGGGAGGGAAGGCAACCAAGGGC
TGGTTGGGGAAATTATTGTTCCCTGATGTGTATAAAACGAGGATTGCATA
TTTGAAAAACTTAATGGCAGGTGCGATCGACGCACTTTCTCTGCTGCACG
AGGCCGGGGTCTGTCATGGCGCTCTCTCTCCCTCTACGCTCTTGGTCTCA
ACGGCCGATTTGAGGGAGGGAGGGAGGGAGGGAGGGATGGAGGTGTGGTT
GTCGGATTTGGGCTTTGCGAAGAATGTGCTGAGTCAGGAGAAGGTGGATT
TCGAGGGCCTGGTGAAGAGGGATTGGAAGGGGTGTTCCTACTCCTTGTTG
GAGGTTTTCTTGAGGCTCATGGCCGAGGACGAGGAGGAGGAGGAAAAGAA
GCAGGGAGAGGGCCTCGGAGGGGTTGAAGGGGGGTTGGGGCGATGGGAGG
AGGGGTTTGGATTGCCTTTTGCGCAGGTGACGGCGGGAAGCTTGCAGGGA
GTGACCGAGGCGAGATTTGGGGGCGATGTAGGGGTAGGGTTAAGAGGCCT
GGTGAGCAATGAGAGGGTGTTTAAGAAGGCCGTGGAGTGCCTGGACGAGG
AGGGGGGCGCGGGGTGGGTGTTATTGAATGACATGGCGAACGTCGAGAGG
TTGATGATGGGGGAAGAGAGAGGAGTGTACGGTGTGGGGGAGCGATTGTT
GGGGAGTGGTTTTTTTGACGATGATTAG
back to top
Synonyms
Publications