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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:191369..192925 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00550.1 vs.
Match: EWM28336.1 (hypothetical protein Naga_100109g12 [Nannochloropsis gaditana]) HSP 1 Score: 563.5 bits (1451), Expect = 6.100e-157 Identity = 297/459 (64.71%), Postives = 348/459 (75.82%), Query Frame = 0
Query: 34 PCPPC--RRHHIPILMSGN----NDYGGDDPFAIRILQPNQLRIIRVIGEQRLTIEEETEKRDGSGPRGAFGRIRNKKS-TEGQSQTSREMKTMGVGVRLFEAVDSQTGERLIMKEFLPMMRNVAMGEVELYRYLHHWVQTNHPSWQPSDIPIVPFHGYLQTGPEVEDPSFVYDWAERFGSSVPPPLAGNTWVVLRTPGLITLTSLPRLALEREGGGGGKATK---------GWLGKLL---FPDVYKTRIAYLKNLMAGAIDALSLLHEAGVCHGALSPSTLLVSTADLREGGREGGMEVWLSDLGFAKNVLSQEKVDFEGLVKRDWKGCSYSLLEVFLRLMAEDEEEEEKKQGEGLGGVEGGLGRWEEGFGLPFAQVTAGSLQGVTEARFGGDVGVGLRGLVSNERVFKKAVECLDEEGGAGWVLLNDMANVERLMMGEERGVYGVGERLLGSGFFD 474
PC P RR P+ +S N N DDPF I +L+PNQLRI+R IGEQRLT+EEETE RDG+GPRGAFGRIRNKKS TE +Q REM+ MGVG RLFEAVD++TG+ L++KEFLPMM+NVAMGEVELYRYL+ W + N P+W PSD+P+VP HGYL TGPEVEDPSFV W +RFG S+PPP+ GN WV +R L+ LTS+PRLAL G A K GW G+L PD R+AYLKN+ G+I A+SLLH+AGV HGA+SPST+LVSTADLREGGREGGMEVWLS+LGFA NVLSQ +DFEGLVKRDWKGCSY+LLEVFLRL+AE+EE GEG GG GLG++EEGF LPFAQV AG LQ VTE RF GDV VGLR LV+NER +++AV CLD +GGAGWVLL+DMAN RL + +E GVYGVG RLL S F++
Sbjct: 70 PCRPISRRRPRRPLALSANDYDENRRKTDDPFTIPVLEPNQLRIVRPIGEQRLTVEEETETRDGAGPRGAFGRIRNKKSRTEQPAQIRREMRNMGVGARLFEAVDTRTGQALVLKEFLPMMKNVAMGEVELYRYLYDWTRRNQPAWLPSDLPLVPLHGYLTTGPEVEDPSFVQAWRDRFGPSLPPPVPGNVWVAVRAARLLPLTSVPRLAL-------GDAEKFPLASPGGAGWWGRLWGKGGPD----RVAYLKNVFEGSITAVSLLHQAGVVHGAVSPSTILVSTADLREGGREGGMEVWLSELGFATNVLSQGTLDFEGLVKRDWKGCSYALLEVFLRLLAEEEE------GEGEGG--DGLGKYEEGFTLPFAQVEAGGLQAVTEERFKGDVSVGLRSLVNNERAYQQAVACLDAKGGAGWVLLHDMANAGRL-VAQEGGVYGVGPRLLASSFWE 508
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00550.1 ID=NO05G00550.1|Name=NO05G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp ATGCTGCCATCCCGGTGGCAAGGCCGCTCCATCCTTTTTTTCTCTCTCCT CCTTCCATCGTCGTTGGCATTCGTCGTCCGTCCTTCTTCGACGTTGGCGC CGTGCCCACCATGCCGGCGCCACCATATCCCCATCTTGATGTCCGGAAAC AATGATTATGGAGGAGACGACCCCTTTGCCATCCGAATCCTCCAACCCAA TCAACTTCGCATCATCCGGGTCATTGGAGAGCAACGCCTCACGATCGAAG AAGAGACCGAAAAGCGGGATGGTTCAGGTCCACGGGGTGCCTTTGGTCGG ATTCGCAACAAAAAGTCGACTGAGGGACAATCACAAACAAGTCGAGAAAT GAAAACCATGGGCGTGGGCGTTCGATTGTTCGAGGCGGTGGACTCGCAAA CAGGAGAACGGCTTATTATGAAGGAATTCCTGCCTATGATGCGCAACGTG GCCATGGGCGAGGTGGAGCTTTACCGGTACCTGCACCACTGGGTGCAGAC CAACCACCCCTCCTGGCAGCCGTCCGATATCCCCATCGTCCCCTTCCACG GCTACCTTCAAACAGGTCCTGAAGTGGAAGACCCTTCTTTCGTCTACGAC TGGGCAGAACGTTTTGGTTCCTCCGTCCCTCCCCCCCTCGCGGGCAACAC GTGGGTCGTGTTACGGACACCGGGGCTCATCACGCTTACTTCCCTCCCTC GCCTGGCCTTGGAACGCGAAGGAGGAGGGGGAGGGAAGGCAACCAAGGGC TGGTTGGGGAAATTATTGTTCCCTGATGTGTATAAAACGAGGATTGCATA TTTGAAAAACTTAATGGCAGGTGCGATCGACGCACTTTCTCTGCTGCACG AGGCCGGGGTCTGTCATGGCGCTCTCTCTCCCTCTACGCTCTTGGTCTCA ACGGCCGATTTGAGGGAGGGAGGGAGGGAGGGAGGGATGGAGGTGTGGTT GTCGGATTTGGGCTTTGCGAAGAATGTGCTGAGTCAGGAGAAGGTGGATT TCGAGGGCCTGGTGAAGAGGGATTGGAAGGGGTGTTCCTACTCCTTGTTG GAGGTTTTCTTGAGGCTCATGGCCGAGGACGAGGAGGAGGAGGAAAAGAA GCAGGGAGAGGGCCTCGGAGGGGTTGAAGGGGGGTTGGGGCGATGGGAGG AGGGGTTTGGATTGCCTTTTGCGCAGGTGACGGCGGGAAGCTTGCAGGGA GTGACCGAGGCGAGATTTGGGGGCGATGTAGGGGTAGGGTTAAGAGGCCT GGTGAGCAATGAGAGGGTGTTTAAGAAGGCCGTGGAGTGCCTGGACGAGG AGGGGGGCGCGGGGTGGGTGTTATTGAATGACATGGCGAACGTCGAGAGG TTGATGATGGGGGAAGAGAGAGGAGTGTACGGTGTGGGGGAGCGATTGTT GGGGAGTGGTTTTTTTGACGATGATTAG back to topprotein sequence of NO05G00550.1 >NO05G00550.1-protein ID=NO05G00550.1-protein|Name=NO05G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp MLPSRWQGRSILFFSLLLPSSLAFVVRPSSTLAPCPPCRRHHIPILMSGN NDYGGDDPFAIRILQPNQLRIIRVIGEQRLTIEEETEKRDGSGPRGAFGR IRNKKSTEGQSQTSREMKTMGVGVRLFEAVDSQTGERLIMKEFLPMMRNV AMGEVELYRYLHHWVQTNHPSWQPSDIPIVPFHGYLQTGPEVEDPSFVYD WAERFGSSVPPPLAGNTWVVLRTPGLITLTSLPRLALEREGGGGGKATKG WLGKLLFPDVYKTRIAYLKNLMAGAIDALSLLHEAGVCHGALSPSTLLVS TADLREGGREGGMEVWLSDLGFAKNVLSQEKVDFEGLVKRDWKGCSYSLL EVFLRLMAEDEEEEEKKQGEGLGGVEGGLGRWEEGFGLPFAQVTAGSLQG VTEARFGGDVGVGLRGLVSNERVFKKAVECLDEEGGAGWVLLNDMANVER LMMGEERGVYGVGERLLGSGFFDDD* back to topmRNA from alignment at chr5:191369..192925+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00550.1 ID=NO05G00550.1|Name=NO05G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp|location=Sequence derived from alignment at chr5:191369..192925+ (Nannochloropsis oceanica) ATGCTGCCATCCCGGTGGCAAGGCCGCTCCATCCTTTTTTTCTCTCTCCT
CCTTCCATCGTCGTTGGCATTCGTCGTCCGTCCTTCTTCGACGTTGGCGC
CGTGCCCACCATGCCGGCGCCACCATATCCCCATCTTGATGTCCGGAAAC
AATGATTATGGAGGAGACGACCCCTTTGCCATCCGAATCCTCCAACCCAA
TCAACTTCGCATCATCCGGGTCATTGGAGAGCAACGCCTCACGATCGAAG
AAGAGACCGAAAAGCGGGATGGTTCAGGTCCACGGGGTGCCTTTGGTCGG
ATTCGCAACAAAAAGTCGACTGAGGGACAATCACAAACAAGTCGAGAAAT
GAAAACCATGGGCGTGGGCGTTCGATTGTTCGAGGCGGTGGACTCGCAAA
CAGGAGAACGGCTTATTATGAAGGAATTCCTGCCTATGATGCGCAACGTG
GCCATGGGCGAGGTGGAGCTTTACCGGTAATAATCAAGACTGGATGTCAC
ATACTGTTTCTTCTCTCTGATCTGCTGAGTTTAAAGTTCTTAAATCGTGA
CTCAAATTGTTGTCTCAATACTCAACCACCCTTCCCTCCCTCACTCCCTC
CCTAGGTACCTGCACCACTGGGTGCAGACCAACCACCCCTCCTGGCAGCC
GTCCGATATCCCCATCGTCCCCTTCCACGGCTACCTTCAAACAGGTCCTG
AAGTGGAAGACCCTTCTTTCGTCTACGACTGGGCAGAACGTTTTGGTTCC
TCCGTCCCTCCCCCCCTCGCGGGCAACACGTGGGTCGTGTTACGGACACC
GGGGCTCATCACGCTTACTTCCCTCCCTCGCCTGGCCTTGGAACGCGAAG
GAGGAGGGGGAGGGAAGGCAACCAAGGGCTGGTTGGGGAAATTATTGTTC
CCTGATGTGTATAAAACGAGGATTGCATATTTGAAAAACTTAATGGCAGG
TGCGATCGACGCACTTTCTCTGCTGCACGAGGCCGGGGTCTGTCATGGCG
CTCTCTCTCCCTCTACGCTCTTGGTCTCAACGGCCGATTTGAGGGAGGGA
GGGAGGGAGGGAGGGATGGAGGTGTGGTTGTCGGATTTGGGCTTTGCGAA
GAATGTGCTGAGTCAGGAGAAGGTGGATTTCGAGGGCCTGGTGAAGAGGG
ATTGGAAGGGGTGTTCCTACTCCTTGTTGGAGGTTTTCTTGAGGCTCATG
GCCGAGGACGAGGAGGAGGAGGAAAAGAAGCAGGGAGAGGGCCTCGGAGG
GGTTGAAGGGGGGTTGGGGCGATGGGAGGAGGGGTTTGGATTGCCTTTTG
CGCAGGTGACGGCGGGAAGCTTGCAGGGAGTGACCGAGGCGAGATTTGGG
GGCGATGTAGGGGTAGGGTTAAGAGGCCTGGTGAGCAATGAGAGGGTGTT
TAAGAAGGCCGTGGAGTGCCTGGACGAGGAGGGGGGCGCGGGGTGGGTGT
TATTGAATGACATGGCGAACGTCGAGAGGTTGATGATGGGGGAAGAGAGA
GGAGTGTACGGTGTGGGGGAGCGATTGTTGGGGAGTGGTTTTTTTGACGA
TGATTAG back to topCoding sequence (CDS) from alignment at chr5:191369..192925+ >NO05G00550.1 ID=NO05G00550.1|Name=NO05G00550.1|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at chr5:191369..192925+ (Nannochloropsis oceanica) ATGCTGCCATCCCGGTGGCAAGGCCGCTCCATCCTTTTTTTCTCTCTCCT CCTTCCATCGTCGTTGGCATTCGTCGTCCGTCCTTCTTCGACGTTGGCGC CGTGCCCACCATGCCGGCGCCACCATATCCCCATCTTGATGTCCGGAAAC AATGATTATGGAGGAGACGACCCCTTTGCCATCCGAATCCTCCAACCCAA TCAACTTCGCATCATCCGGGTCATTGGAGAGCAACGCCTCACGATCGAAG AAGAGACCGAAAAGCGGGATGGTTCAGGTCCACGGGGTGCCTTTGGTCGG ATTCGCAACAAAAAGTCGACTGAGGGACAATCACAAACAAGTCGAGAAAT GAAAACCATGGGCGTGGGCGTTCGATTGTTCGAGGCGGTGGACTCGCAAA CAGGAGAACGGCTTATTATGAAGGAATTCCTGCCTATGATGCGCAACGTG GCCATGGGCGAGGTGGAGCTTTACCGGTACCTGCACCACTGGGTGCAGAC CAACCACCCCTCCTGGCAGCCGTCCGATATCCCCATCGTCCCCTTCCACG GCTACCTTCAAACAGGTCCTGAAGTGGAAGACCCTTCTTTCGTCTACGAC TGGGCAGAACGTTTTGGTTCCTCCGTCCCTCCCCCCCTCGCGGGCAACAC GTGGGTCGTGTTACGGACACCGGGGCTCATCACGCTTACTTCCCTCCCTC GCCTGGCCTTGGAACGCGAAGGAGGAGGGGGAGGGAAGGCAACCAAGGGC TGGTTGGGGAAATTATTGTTCCCTGATGTGTATAAAACGAGGATTGCATA TTTGAAAAACTTAATGGCAGGTGCGATCGACGCACTTTCTCTGCTGCACG AGGCCGGGGTCTGTCATGGCGCTCTCTCTCCCTCTACGCTCTTGGTCTCA ACGGCCGATTTGAGGGAGGGAGGGAGGGAGGGAGGGATGGAGGTGTGGTT GTCGGATTTGGGCTTTGCGAAGAATGTGCTGAGTCAGGAGAAGGTGGATT TCGAGGGCCTGGTGAAGAGGGATTGGAAGGGGTGTTCCTACTCCTTGTTG GAGGTTTTCTTGAGGCTCATGGCCGAGGACGAGGAGGAGGAGGAAAAGAA GCAGGGAGAGGGCCTCGGAGGGGTTGAAGGGGGGTTGGGGCGATGGGAGG AGGGGTTTGGATTGCCTTTTGCGCAGGTGACGGCGGGAAGCTTGCAGGGA GTGACCGAGGCGAGATTTGGGGGCGATGTAGGGGTAGGGTTAAGAGGCCT GGTGAGCAATGAGAGGGTGTTTAAGAAGGCCGTGGAGTGCCTGGACGAGG AGGGGGGCGCGGGGTGGGTGTTATTGAATGACATGGCGAACGTCGAGAGG TTGATGATGGGGGAAGAGAGAGGAGTGTACGGTGTGGGGGAGCGATTGTT GGGGAGTGGTTTTTTTGACGATGATTAG back to top
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