NO05G00190.1, NO05G00190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00190.1
Unique NameNO05G00190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2024
Alignment locationchr5:86318..88964 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:86318..88964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G00190.1 vs.
Match: EWM28375.1 (zinc finger mynd domain-containing protein 17 [Nannochloropsis gaditana])

HSP 1 Score: 556.6 bits (1433), Expect = 7.100e-155
Identity = 267/446 (59.87%), Postives = 341/446 (76.46%), Query Frame = 0 
Query:    1 MLTDEEAWQTLAPFLSLGVLKTRQVASMLKAPLARRGDLYQMLIAEAYQTREAMRRICAECGKREGEQGMGKLKQCGKCANIWYCSRDCQLANFHSGVHKQACTALKIARICRENEGIRSQYEEQWLNKYLVGLHRESIMTWPEGHIPEGWTAFFETRGISQQASANNSSGMALSEVLHEGLTIALAAKKFGLLGREGGKEG----WETKKRPFRLHVLGATETEEARRLHLTMGELYKLLYPYYYEGLEVSLFGPQLTSLTTFRVPLKGFEGGKEGGEEGGRVTVEKSNLLYHDWVLRHGGGTAPKPDLVVAFNSGAYTGNDHQEIDGSMWLPTLAYIIKARLPLLLTMYDALEGKKTVDVLQANYKEDFCANIIWGPELNPMRSLVLEETEPPALQRYAKMVMNGVMAAGEEEPEDRELAKLDLSLCNRTAGNSRFWIGVQGEK 443
            ++TDE+AWQ  +PFL++G++K  ++ ++LKAPL +RG+  Q+L  E  Q REAMRRICAECG+REG++G+ KLK CGKCANIWYCSRDCQLANFHSG HK+ACT+LKIARICREN+  R++ +E W+  YL+GL   + + WPEG IPEGW+ FF  R +  Q SAN++SGM LSE+LHEGLT+A+AAK+FGLLG  GG+EG        +RPFRLH+LGATET+E +RL L+MGEL  LL P+Y+EGLEVS+FGPQ+ + T FRV L       EG E    +TV KSNLLYH+WVL H G     PDLVVA NSG +TG+DH  +DGSMWLPTL Y++ + +P LLTMYDA EG+KT+++L     E F A + WGP+LNPMRSLVLEETE PALQRYA++V +G M AG +EP D  L  L+L+LCNRT G+SR+W+GV+G +
Sbjct:   16 VITDEQAWQYFSPFLTVGLVKAHELHALLKAPLRQRGERLQLLFDETIQKREAMRRICAECGRREGDKGVDKLKVCGKCANIWYCSRDCQLANFHSGEHKKACTSLKIARICRENQMKRAEMKEDWIRTYLMGLEGHTKIQWPEGQIPEGWSEFFAARQLGHQVSANSNSGMCLSELLHEGLTVAMAAKRFGLLGGRGGREGHGGDHGRHRRPFRLHILGATETQEIQRLPLSMGELGALLCPFYFEGLEVSVFGPQVMTPTAFRVSL------AEGKETARDITVWKSNLLYHNWVLSHEGSKEAPPDLVVALNSGLHTGDDHHHVDGSMWLPTLTYLVASGIPFLLTMYDAEEGRKTLEML-----ESFDACVAWGPDLNPMRSLVLEETEAPALQRYARLVADGRMDAGADEP-DGPLPPLELTLCNRTTGDSRYWVGVKGTR 449
The following BLAST results are available for this feature:
BLAST of NO05G00190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28375.17.100e-15559.87zinc finger mynd domain-containing protein 17 [Nan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00190NO05G00190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00190.1NO05G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00190.1.cds1NO05G00190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00190.1.cds2NO05G00190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00190.1.cds3NO05G00190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00190.1.cds4NO05G00190.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00190.1 ID=NO05G00190.1|Name=NO05G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2024bp
CTTCAATCTCGCTTTTTTGTGCTTTTACGCCTTCAGTGCATTCCTTCAGT
GGTAAATCTCTCATCATAATGCCCGCCTTTGAACTATCATTCCCTGTGCG
CCACACATTTATAACTTCCCTTCCTCGAGGAAATTACGTTATCTGTGCAC
CAGTCAGACATGTCGACGGTTCGGACTAGCTCACCATACACAACATACTA
GTGGGGCGAATAAGTCATGTTGGGATGCCCGAAGATCTTGATCCATATTC
TATTACAGATTGTAGCCTTCTGGCCTTTGGAAAGCCGGGCTGGATGTCTG
CGGGGTGTGTCAGATGAGACTTCTAAAACCCCATTAAATAGCCTATTTAA
GGGTTTTGGGGAGAGTTGAACACACCCCCTAATGTGCTGTTGGGTTGGCG
AGCGACAGCGAGTTATCCCAGGCGATGTCCGCTTGACTTAAGGGCAGTCT
TCATGCCTCATATCTGTGAGTGTGTGTCTCAGTGTGTGGAATAGTTTGGC
AGGGTACAGGCGCAATGTGGAGACAAAGACAGAGCGCCAGGAGACATACG
TCCCCCAGCTCGATAACTCTCGCCGGTGTGTGTCTCTCTCTGGGACCATA
AAAAAATCTTCAACCCCTCTCCTCTCCACCCACCCACCACCACGGACTAG
GGACAGATGTTGACGGACGAGGAGGCATGGCAAACATTGGCCCCGTTTCT
GAGTTTGGGCGTATTAAAGACGCGACAAGTGGCATCCATGCTCAAGGCCC
CCCTTGCCCGGCGCGGGGACCTTTATCAGATGCTGATTGCCGAAGCCTAC
CAGACGCGAGAAGCAATGCGGCGGATTTGTGCTGAGTGTGGAAAACGAGA
AGGAGAGCAGGGCATGGGAAAACTCAAGCAATGCGGGAAATGTGCCAACA
TCTGGTATTGTTCCCGCGACTGTCAACTTGCCAACTTCCACTCCGGCGTC
CACAAACAAGCCTGTACTGCCCTCAAAATCGCGCGGATCTGCCGTGAAAA
TGAGGGAATCCGCTCACAATACGAGGAGCAATGGTTGAACAAATATCTGG
TCGGTCTGCACCGAGAGTCGATCATGACTTGGCCTGAGGGACATATCCCG
GAGGGATGGACGGCCTTCTTCGAGACGCGGGGCATCTCACAGCAGGCGAG
CGCGAACAATAGCAGTGGCATGGCCTTGAGTGAGGTGTTACACGAGGGCC
TGACCATTGCCTTGGCGGCGAAAAAGTTCGGCTTGCTGGGCAGGGAGGGA
GGGAAGGAGGGATGGGAGACGAAAAAGCGGCCATTTCGACTGCATGTGTT
GGGGGCGACGGAGACGGAGGAGGCGCGGCGCCTGCATTTGACCATGGGAG
AGCTCTATAAGCTGCTGTATCCCTACTACTATGAAGGATTGGAGGTCTCT
CTCTTCGGTCCCCAGCTCACGTCCCTCACCACTTTCCGCGTGCCTCTTAA
AGGGTTCGAGGGTGGGAAGGAGGGCGGGGAGGAAGGCGGGAGGGTGACCG
TGGAGAAGAGCAATTTGCTGTACCATGATTGGGTGCTGCGGCATGGAGGA
GGGACGGCGCCTAAGCCTGATTTGGTGGTGGCGTTCAACAGTGGAGCGTA
TACTGGGAACGACCACCAGGAAATCGACGGCTCCATGTGGTTGCCTACCC
TCGCCTACATCATAAAAGCCCGCCTCCCCTTACTTTTGACCATGTATGAT
GCCCTCGAAGGGAAGAAGACAGTGGATGTCCTTCAAGCTAATTACAAAGA
GGACTTCTGCGCCAACATTATCTGGGGGCCTGAGCTTAATCCGATGCGTT
CCTTGGTGTTGGAGGAGACAGAACCGCCTGCCTTGCAGCGATATGCCAAG
ATGGTCATGAATGGCGTGATGGCGGCGGGGGAGGAGGAACCAGAAGACAG
AGAACTAGCGAAGTTGGACTTGTCACTATGTAATCGCACGGCCGGCAACT
CGCGGTTTTGGATTGGAGTGCAGGGGGAAAAGGATAAGGAGGGGGGGGGA
AAAGGGAAGGGGGGGGGAAAGTGA
back to top

protein sequence of NO05G00190.1

>NO05G00190.1-protein ID=NO05G00190.1-protein|Name=NO05G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MLTDEEAWQTLAPFLSLGVLKTRQVASMLKAPLARRGDLYQMLIAEAYQT
REAMRRICAECGKREGEQGMGKLKQCGKCANIWYCSRDCQLANFHSGVHK
QACTALKIARICRENEGIRSQYEEQWLNKYLVGLHRESIMTWPEGHIPEG
WTAFFETRGISQQASANNSSGMALSEVLHEGLTIALAAKKFGLLGREGGK
EGWETKKRPFRLHVLGATETEEARRLHLTMGELYKLLYPYYYEGLEVSLF
GPQLTSLTTFRVPLKGFEGGKEGGEEGGRVTVEKSNLLYHDWVLRHGGGT
APKPDLVVAFNSGAYTGNDHQEIDGSMWLPTLAYIIKARLPLLLTMYDAL
EGKKTVDVLQANYKEDFCANIIWGPELNPMRSLVLEETEPPALQRYAKMV
MNGVMAAGEEEPEDRELAKLDLSLCNRTAGNSRFWIGVQGEKDKEGGGKG
KGGGK*
back to top

mRNA from alignment at chr5:86318..88964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00190.1 ID=NO05G00190.1|Name=NO05G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2647bp|location=Sequence derived from alignment at chr5:86318..88964- (Nannochloropsis oceanica)
CTTCAATCTCGCTTTTTTGTGCTTTTACGCCTTCAGTGCATTCCTTCAGT
GGTAAATCTCTCATCATAATGCCCGCCTTTGAACTATCATTCCCTGTGCG
CCACACATTTATAACTTCCCTTCCTCGAGGAAATTACGTTATCTGTGCAC
CAGTCAGACATGTCGACGGTTCGGACTAGCTCACCATACACAACATACTA
GTGGGGCGAATAAGTCATGTTGGGATGCCCGAAGATCTTGATCCATATTC
TATTACAGATTGTAGCCTTCTGGCCTTTGGAAAGCCGGGCTGGATGTCTG
CGGGGTGTGTCAGATGAGACTTCTAAAACCCCATTAAATAGCCTATTTAA
GGGTTTTGGGGAGAGTTGAACACACCCCCTAATGTGCTGTTGGGTTGGCG
AGCGACAGCGAGTTATCCCAGGCGATGTCCGCTTGACTTAAGGGCAGTCT
TCATGCCTCATATCTGTGAGTGTGTGTCTCAGTGTGTGGAATAGTTTGGC
AGGGTACAGGCGCAATGTGGAGACAAAGACAGAGCGCCAGGAGACATACG
TCCCCCAGCTCGATAACTCTCGCCGGTGTGTGTCTCTCTCTGGGACCATA
AAAAAATCTTCAACCCCTCTCCTCTCCACCCACCCACCACCACGGACTAG
GGACAGATGTTGACGGACGAGGAGGCATGGCAAACATTGGCCCCGTTTCT
GAGTTTGGGCGTATTAAAGACGCGACAAGTGGCATCCATGCTCAAGGCCC
CCCTTGCCCGGCGCGGGGACCTTTATCAGATGCTGATTGCCGAAGCCTAC
CAGACGCGAGAAGCAATGCGGCGGATTTGTGCTGAGTGTGGAAAACGAGA
AGGAGAGCAGGGCATGGGAAAACTCAAGCAATGCGGGAAATGTGCCAACA
TCTGGTAAGGCGAGCGTGCTGGAGGGAAAGAGGGGGAGAGCAAATAAGGG
ATGATGTCAGGGAGTGAACATAGGGATTTATTGCATTGATAAAAAAGCCC
TTTTGAAAGCATGCCCTCCTCCGTATACACATAGGTTATAGTTATAGTTA
TTTCCTTTCTGTATGCTTATTTCCTGACTGTACCTTTGACTCTCCTTCTT
CCCTCCCTCCCTCCCTCCCTCCCTCCTCTTCCTCCCACAAGGTATTGTTC
CCGCGACTGTCAACTTGCCAACTTCCACTCCGGCGTCCACAAACAAGCCT
GTACTGCCCTCAAAATCGCGCGGATCTGCCGTGAAAATGAGGGAATCCGC
TCACAATACGAGGAGCAATGGTTGAACAAATATCTGGTCGGTCTGCACCG
AGAGTCGATCATGACTTGGCCTGAGGGACATATCCCGGAGGGATGGACGG
CCTTCTTCGAGACGCGGGGCATCTCACAGCAGGCGAGCGCGAACAATAGC
AGTGGCATGGCCTTGAGTGAGGTGTTACACGAGGGCCTGACCATTGCCTT
GGCGGCGAAAAAGTTCGGCTTGCTGGGCAGGGAGGGAGGGAAGGAGGGAT
GGGAGACGAAAAAGCGGCCATTTCGACTGCATGTGTTGGGGGCGACGGAG
ACGGAGGAGGCGCGGCGCCTGCATTTGACCATGGGAGAGCTCTATAAGCT
GCTGTATCCCTACTACTATGAAGGCAAGTCTCCTCTTTCTGCCTTCTCTC
TCTCCTTCCCTCCTTCCCTCCTTCCCTCCCTCCCTCACATTTTCCCCTCC
CCTTCAATATTTTCCTCAACCTCCTATCCCACTCCCTTCCAATGATATGT
CCATGGTCTGACCGCCCTCACTCAAAGCTTCCTCCCTCCCTTTTCAGGAT
TGGAGGTCTCTCTCTTCGGTCCCCAGCTCACGTCCCTCACCACTTTCCGC
GTGCCTCTTAAAGGGTTCGAGGGTGGGAAGGAGGGCGGGGAGGAAGGCGG
GAGGGTGACCGTGGAGAAGAGCAATTTGCTGTACCATGATTGGGTGCTGC
GGCATGGAGGAGGGACGGCGCCTAAGCCTGATTTGGTGGTGGCGTTCAAC
AGTGGAGCGTATACTGGTGGGAAGGAGGGCGGGGAGGGAGGGAAGGAGAG
GGGGAGGAATGGAAGGATGAAGGCTGGGAGGGATGTGGGAATGATGTAGT
CTGCCTGGTTGAGTTTGTCTCTCCTTTCTTTGCATGGGAAAGTTTATGAC
ATTCTCAGAAGTGTCGTAATTCCTCATTTACTTGTCCCCGCCTCCTTTTC
CCTCTTTCTTTACCGTCCCTCTTTCAAGGGAACGACCACCAGGAAATCGA
CGGCTCCATGTGGTTGCCTACCCTCGCCTACATCATAAAAGCCCGCCTCC
CCTTACTTTTGACCATGTATGATGCCCTCGAAGGGAAGAAGACAGTGGAT
GTCCTTCAAGCTAATTACAAAGAGGACTTCTGCGCCAACATTATCTGGGG
GCCTGAGCTTAATCCGATGCGTTCCTTGGTGTTGGAGGAGACAGAACCGC
CTGCCTTGCAGCGATATGCCAAGATGGTCATGAATGGCGTGATGGCGGCG
GGGGAGGAGGAACCAGAAGACAGAGAACTAGCGAAGTTGGACTTGTCACT
ATGTAATCGCACGGCCGGCAACTCGCGGTTTTGGATTGGAGTGCAGGGGG
AAAAGGATAAGGAGGGGGGGGGAAAAGGGAAGGGGGGGGGAAAGTGA
back to top

Coding sequence (CDS) from alignment at chr5:86318..88964-

>NO05G00190.1 ID=NO05G00190.1|Name=NO05G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at chr5:86318..88964- (Nannochloropsis oceanica)
ATGTTGACGGACGAGGAGGCATGGCAAACATTGGCCCCGTTTCTGAGTTT
GGGCGTATTAAAGACGCGACAAGTGGCATCCATGCTCAAGGCCCCCCTTG
CCCGGCGCGGGGACCTTTATCAGATGCTGATTGCCGAAGCCTACCAGACG
CGAGAAGCAATGCGGCGGATTTGTGCTGAGTGTGGAAAACGAGAAGGAGA
GCAGGGCATGGGAAAACTCAAGCAATGCGGGAAATGTGCCAACATCTGGT
ATTGTTCCCGCGACTGTCAACTTGCCAACTTCCACTCCGGCGTCCACAAA
CAAGCCTGTACTGCCCTCAAAATCGCGCGGATCTGCCGTGAAAATGAGGG
AATCCGCTCACAATACGAGGAGCAATGGTTGAACAAATATCTGGTCGGTC
TGCACCGAGAGTCGATCATGACTTGGCCTGAGGGACATATCCCGGAGGGA
TGGACGGCCTTCTTCGAGACGCGGGGCATCTCACAGCAGGCGAGCGCGAA
CAATAGCAGTGGCATGGCCTTGAGTGAGGTGTTACACGAGGGCCTGACCA
TTGCCTTGGCGGCGAAAAAGTTCGGCTTGCTGGGCAGGGAGGGAGGGAAG
GAGGGATGGGAGACGAAAAAGCGGCCATTTCGACTGCATGTGTTGGGGGC
GACGGAGACGGAGGAGGCGCGGCGCCTGCATTTGACCATGGGAGAGCTCT
ATAAGCTGCTGTATCCCTACTACTATGAAGGATTGGAGGTCTCTCTCTTC
GGTCCCCAGCTCACGTCCCTCACCACTTTCCGCGTGCCTCTTAAAGGGTT
CGAGGGTGGGAAGGAGGGCGGGGAGGAAGGCGGGAGGGTGACCGTGGAGA
AGAGCAATTTGCTGTACCATGATTGGGTGCTGCGGCATGGAGGAGGGACG
GCGCCTAAGCCTGATTTGGTGGTGGCGTTCAACAGTGGAGCGTATACTGG
GAACGACCACCAGGAAATCGACGGCTCCATGTGGTTGCCTACCCTCGCCT
ACATCATAAAAGCCCGCCTCCCCTTACTTTTGACCATGTATGATGCCCTC
GAAGGGAAGAAGACAGTGGATGTCCTTCAAGCTAATTACAAAGAGGACTT
CTGCGCCAACATTATCTGGGGGCCTGAGCTTAATCCGATGCGTTCCTTGG
TGTTGGAGGAGACAGAACCGCCTGCCTTGCAGCGATATGCCAAGATGGTC
ATGAATGGCGTGATGGCGGCGGGGGAGGAGGAACCAGAAGACAGAGAACT
AGCGAAGTTGGACTTGTCACTATGTAATCGCACGGCCGGCAACTCGCGGT
TTTGGATTGGAGTGCAGGGGGAAAAGGATAAGGAGGGGGGGGGAAAAGGG
AAGGGGGGGGGAAAGTGA
back to top
Synonyms
Publications