NO04G05190.1, NO04G05190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05190.1
Unique NameNO04G05190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1615
Alignment locationchr4:1446013..1448629 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1446013..1448629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G05190.1 vs.
Match: EWM28912.1 (hypothetical protein Naga_100869g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 352.8 bits (904), Expect = 1.200e-93
Identity = 171/284 (60.21%), Postives = 203/284 (71.48%), Query Frame = 0 
Query:    6 LLLPLLGSTRTATAIPASDAAATTEHPSHPVSAFPPPSNASGHLAAAAD-------AAADAAAPMPDMDPPVNAIEEQIALHGHALPAQTCKGSFEDGFAGWTSLEGARNESIVLVSTPVRAGKQAARVTVNPGEMTHHGNRAEITHNLEDAPGTVGWYAWSVLIPLSYPTDEDPTRNWQIICQWHDQPDLDAGQSWDGFPPHNSSIALYLLNHPNRTSLAMGVGFNLPKGTWQYGPVVIEKGEWVDVLFHIGWSTGDDGFIHTFIEGGKERGREMQALTPPEG 283
            ++L LL +  T+ A+P     A  +  +  VS+   PS       +          +   A+ PMPDMDPPV++IEEQIALHG  LPA T  GSFEDGF GWTSLEGA+ +SIVLVS+PVR G Q+ R+ V PG+   HGNRAEITHNLED+PGT GWYAWS+ IP  YPT  DPTR WQI+CQWHDQPDLDAGQSWD FPPHNSSIALYLLN+P  TS+ +GVG NLPKGTWQYGP  +EKGEW+D+LFHIGWSTG DGF++  +E G    R+ Q LTP  G
Sbjct:   51 VVLFLLATLVTSHALPTQTLTAAWDTVASFVSSPALPSTRPTSTLSQEKRDPSTTISRPSASVPMPDMDPPVDSIEEQIALHGRPLPASTFVGSFEDGFEGWTSLEGAQEDSIVLVSSPVRTGNQSVRIRVRPGDYIQHGNRAEITHNLEDSPGTEGWYAWSLYIPRDYPTVADPTRQWQILCQWHDQPDLDAGQSWDAFPPHNSSIALYLLNYPENTSIGLGVGTNLPKGTWQYGPARVEKGEWIDILFHIGWSTGQDGFVNASVETGGLETRQTQVLTPLGG 334
The following BLAST results are available for this feature:
BLAST of NO04G05190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28912.11.200e-9360.21hypothetical protein Naga_100869g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05190NO04G05190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05190.1NO04G05190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05190.1.cds1NO04G05190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05190.1.cds2NO04G05190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05190.1.cds3NO04G05190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05190.1.cds4NO04G05190.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05190.1.cds5NO04G05190.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05190.1.cds6NO04G05190.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05190.1.cds7NO04G05190.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05190.1 ID=NO04G05190.1|Name=NO04G05190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1615bp
CAGGCAGAATTTGTGCAGGCTAGGGGTGTAGCCTCCTCCCCCTCCCCCTG
TCAATGCGCCTCCTCCTCCTCCTCCTCCCCCTCCTGGGTAGCACCAGGAC
AGCCACGGCTATCCCAGCATCAGATGCCGCCGCAACGACCGAGCATCCTT
CTCATCCAGTATCTGCATTTCCTCCTCCAAGCAACGCCTCGGGCCATCTC
GCTGCTGCTGCTGATGCTGCTGCTGATGCTGCTGCTCCAATGCCCGACAT
GGACCCCCCCGTGAACGCCATCGAGGAACAAATCGCATTGCACGGACACG
CTCTCCCCGCCCAAACCTGTAAGGGATCCTTTGAGGACGGGTTTGCCGGA
TGGACAAGCTTGGAAGGGGCGCGGAATGAGTCGATTGTGCTCGTATCCAC
GCCCGTGCGTGCCGGCAAGCAGGCGGCCCGTGTGACGGTTAATCCTGGGG
AGATGACGCACCATGGAAACAGAGCGGAAATTACGCATAATCTGGAGGAT
GCACCTGGCACCGTAGGTTGGTACGCCTGGTCTGTCTTAATCCCTCTCTC
CTACCCCACCGACGAAGACCCGACCCGGAACTGGCAGATCATATGTCAGT
GGCACGATCAGCCGGACCTGGATGCAGGCCAATCCTGGGACGGTTTTCCT
CCCCACAACTCATCCATCGCCCTCTACCTCCTCAACCACCCGAACCGCAC
GTCCCTGGCCATGGGCGTTGGCTTCAATCTTCCCAAGGGCACCTGGCAAT
ATGGCCCCGTGGTCATAGAGAAAGGCGAGTGGGTTGACGTTTTGTTTCAC
ATTGGATGGTCAACGGGGGACGACGGCTTCATTCACACCTTTATCGAGGG
AGGGAAGGAAAGAGGGAGGGAAATGCAGGCGCTTACCCCTCCAGAGGGGG
TGAGAGGGAGAACGCTTTTTTATCAGTACACAGATTACTTGAAACTGGGC
TTGTATCGGGAGCCCTCCATCAACTACACCAGCACTCTCTATCTAGATGA
GCTACGTTGCGGCCCAACAAAAGAAAGTGTGGCCTTGCCTCCTCTTTTAG
AAGCCGGGGAGAGGGAGGGCGGGGGAAGAGGGAGGAGAGGGAAATTCCGA
ACACGAGTTTTAGGTGGTTGATATTCACTTGCATTTCTCCTTTTGGAAAG
CGTCGCTGTATGTGCAGTAAGAGTTCCGGTTTGACTAGCTTCCCGTCATC
GGTATCAATATTAGGAATAGCGGTGTACATCTCAGACGAGATTACTACCT
ACATGCTTGTGCTGACATTTTCTGATAAAGCGAACAAACATGTACGCAGG
GATCGATCGATCCGTTGCCTTCTTTTTTTTTCCCCCTTTTCGTATACCTC
GCCAGTTCTCTCGCTCGACTTTGATGTCTCTGAAGACAACGCGGAAGAGA
CCCCATCCAAGTAAGCCACGCACAGGGGCAATCTTAGTGTCGCTGCTGCA
CGACTCGGAACGAAGAGCGGATGTGGGGAGTAGTTACCTTCCGAGCTTGG
TCTTTAATCGACCCGTCCCTCGGCCCTCGATCATCACTCCCGTCATCCTG
CCTCCCTCCTCTCCCTTGCCCTCGTCCTCCTCTTCTCGCACACTCATTCC
CATGCTTTGAATACG
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protein sequence of NO04G05190.1

>NO04G05190.1-protein ID=NO04G05190.1-protein|Name=NO04G05190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MRLLLLLLPLLGSTRTATAIPASDAAATTEHPSHPVSAFPPPSNASGHLA
AAADAAADAAAPMPDMDPPVNAIEEQIALHGHALPAQTCKGSFEDGFAGW
TSLEGARNESIVLVSTPVRAGKQAARVTVNPGEMTHHGNRAEITHNLEDA
PGTVGWYAWSVLIPLSYPTDEDPTRNWQIICQWHDQPDLDAGQSWDGFPP
HNSSIALYLLNHPNRTSLAMGVGFNLPKGTWQYGPVVIEKGEWVDVLFHI
GWSTGDDGFIHTFIEGGKERGREMQALTPPEGVRGRTLFYQYTDYLKLGL
YREPSINYTSTLYLDELRCGPTKESVALPPLLEAGEREGGGRGRRGKFRT
RVLGG*
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mRNA from alignment at chr4:1446013..1448629-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05190.1 ID=NO04G05190.1|Name=NO04G05190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2617bp|location=Sequence derived from alignment at chr4:1446013..1448629- (Nannochloropsis oceanica)
CAGGCAGAATTTGTGCAGGCTAGGGGTGTAGCCTCCTCCCCCTCCCCCTG
TCAATGCGCCTCCTCCTCCTCCTCCTCCCCCTCCTGGGTAGCACCAGGAC
AGCCACGGCTATCCCAGCATCAGATGCCGCCGCAACGACCGAGCATCCTT
CTCATCCAGTATCTGCATTTCCTCCTCCAAGCAACGCCTCGGGCCATCTC
GCTGCTGCTGCTGATGCTGCTGCTGATGCTGCTGCTCCAATGCCCGACAT
GGACCCCCCCGTGAACGCCATCGAGGTAAGGCAAAAAAAATGTGGAGATG
ATCTCCATCAGACGGGTATTATACATGCATCTCTTCATTCTTAATCGCGC
CGTTCTGGCGTCTGAATGCTTTCAGCTCTGCTCTGCTGAACCATTTCGTC
CCTTTCCCCCCTCCCTCGCTCCCTCGCTCCCTCCTCCCCTCCCTCTCGCT
CCTTTTGAAGGAACAAATCGCATTGCACGGACACGCTCTCCCCGCCCAAA
CCTGTAAGGGATCCTTTGAGGACGGGTTTGCCGGATGGACAAGCTTGGAA
GGGGCGCGGAATGAGTCGATTGTGGTGAGTTGGGGACGGCGAAAGAAGAG
GAGTAAGGGATGAGACAGATGGAGAGTGGAGGAAAGGAGAACGATGATCG
GATGTGTCGCTGCAGAAATATAGATGTAAACACTTATTCTCTTTCCCCTT
CCCCCCCTCTCTCCATTTTTTCATCTGTCCTCAGCTCGTATCCACGCCCG
TGCGTGCCGGCAAGCAGGCGGCCCGTGTGACGGTTAATCCTGGGGAGATG
ACGCACCATGGAAACAGAGCGGAAATTACGCATAATCTGGAGGATGCACC
TGGTAGGTAGGGATAGAGGTAGGGATATTAGGGCAGGGGGGTTGGAAAAG
GTACCATAAAAATATCATTTTAATACCATCCTCCGTCCCTGCATTCCCCT
CCTTCTTTTGCAGGCACCGTAGGTTGGTACGCCTGGTCTGTCTTAATCCC
TCTCTCCTACCCCACCGACGAAGACCCGACCCGGAACTGGCAGATCATAT
GTCAGTGGCACGATCAGCCGGACCTGGATGCAGGTTGGGATGGAGGGATG
GAGGGACGGAGGGAAAGAAGGAGGGAGGGAGGGGCTGACGGGCGAGAGCA
GTATGTCTCTGACTGGTTTTTCTTCTCTCCTTTCCCCGAAGGGCATCATG
ATCCGTTACACGTCAACGCCTTGCACGGCTCTCTCCCCTCCCTATTCCCC
CCATCCCCCCAGGCCAATCCTGGGACGGTTTTCCTCCCCACAACTCATCC
ATCGCCCTCTACCTCCTCAACCACCCGAACCGCACGTCCCTGGCCATGGG
CGTTGGCTTCAATCTTCCCAAGGGCACCTGGCAATATGGCCCCGTGGTCA
TAGAGAAAGTAAGGAGACCGGTCCTCCCTCCCTCCCTCCCTTCTACCGCG
GCGTCGCTCCTATTTTTTCTTCTCCCTTTTCTCATGACCTCACTCTCCCT
CTTTTCGCCCCCCTCCCCCCTCCTTCCTCCCTCCTTCCTCCCTTACTCCC
TCTTTCCTTGTTTTGGGAATCAGGGCGAGTGGGTTGACGTTTTGTTTCAC
ATTGGATGGTCAACGGGGGACGACGGCTTCATTCACACCTTTATCGAGGG
AGGGAAGGAAAGAGGGAGGGAAATGCAGGCGCTTACCCCTCCAGAGGGGG
TGAGAGGGAGAACGCTTTTTTATCAGTACACAGATTACTTGAAACTGGGC
TTGTATCGGTGCGTGGAGGGAGGGAGGAAGGGAAGGAGGGAGGGAGGGAG
GGAGGGAGAAAGGTAGAATTGTCCCGTGGTTATTGCACAGATGAACATGG
GGATATACTTATTCCTTTCTCAAATCCAAATTTATTCAAACTCATACCAT
CCGACCTCCCACTATTCTTTCCTCTGTCCCTCCCTCCCTACTTCCCTGCT
CCGTCCTCAGGGAGCCCTCCATCAACTACACCAGCACTCTCTATCTAGAT
GAGCTACGTTGCGGCCCAACAAAAGAAAGTGTGGCCTTGCCTCCTCTTTT
AGAAGCCGGGGAGAGGGAGGGCGGGGGAAGAGGGAGGAGAGGGAAATTCC
GAACACGAGTTTTAGGTGGTTGATATTCACTTGCATTTCTCCTTTTGGAA
AGCGTCGCTGTATGTGCAGTAAGAGTTCCGGTTTGACTAGCTTCCCGTCA
TCGGTATCAATATTAGGAATAGCGGTGTACATCTCAGACGAGATTACTAC
CTACATGCTTGTGCTGACATTTTCTGATAAAGCGAACAAACATGTACGCA
GGGATCGATCGATCCGTTGCCTTCTTTTTTTTTCCCCCTTTTCGTATACC
TCGCCAGTTCTCTCGCTCGACTTTGATGTCTCTGAAGACAACGCGGAAGA
GACCCCATCCAAGTAAGCCACGCACAGGGGCAATCTTAGTGTCGCTGCTG
CACGACTCGGAACGAAGAGCGGATGTGGGGAGTAGTTACCTTCCGAGCTT
GGTCTTTAATCGACCCGTCCCTCGGCCCTCGATCATCACTCCCGTCATCC
TGCCTCCCTCCTCTCCCTTGCCCTCGTCCTCCTCTTCTCGCACACTCATT
CCCATGCTTTGAATACG
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Coding sequence (CDS) from alignment at chr4:1446013..1448629-

>NO04G05190.1 ID=NO04G05190.1|Name=NO04G05190.1|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at chr4:1446013..1448629- (Nannochloropsis oceanica)
ATGCGCCTCCTCCTCCTCCTCCTCCCCCTCCTGGGTAGCACCAGGACAGC
CACGGCTATCCCAGCATCAGATGCCGCCGCAACGACCGAGCATCCTTCTC
ATCCAGTATCTGCATTTCCTCCTCCAAGCAACGCCTCGGGCCATCTCGCT
GCTGCTGCTGATGCTGCTGCTGATGCTGCTGCTCCAATGCCCGACATGGA
CCCCCCCGTGAACGCCATCGAGGAACAAATCGCATTGCACGGACACGCTC
TCCCCGCCCAAACCTGTAAGGGATCCTTTGAGGACGGGTTTGCCGGATGG
ACAAGCTTGGAAGGGGCGCGGAATGAGTCGATTGTGCTCGTATCCACGCC
CGTGCGTGCCGGCAAGCAGGCGGCCCGTGTGACGGTTAATCCTGGGGAGA
TGACGCACCATGGAAACAGAGCGGAAATTACGCATAATCTGGAGGATGCA
CCTGGCACCGTAGGTTGGTACGCCTGGTCTGTCTTAATCCCTCTCTCCTA
CCCCACCGACGAAGACCCGACCCGGAACTGGCAGATCATATGTCAGTGGC
ACGATCAGCCGGACCTGGATGCAGGCCAATCCTGGGACGGTTTTCCTCCC
CACAACTCATCCATCGCCCTCTACCTCCTCAACCACCCGAACCGCACGTC
CCTGGCCATGGGCGTTGGCTTCAATCTTCCCAAGGGCACCTGGCAATATG
GCCCCGTGGTCATAGAGAAAGGCGAGTGGGTTGACGTTTTGTTTCACATT
GGATGGTCAACGGGGGACGACGGCTTCATTCACACCTTTATCGAGGGAGG
GAAGGAAAGAGGGAGGGAAATGCAGGCGCTTACCCCTCCAGAGGGGGTGA
GAGGGAGAACGCTTTTTTATCAGTACACAGATTACTTGAAACTGGGCTTG
TATCGGGAGCCCTCCATCAACTACACCAGCACTCTCTATCTAGATGAGCT
ACGTTGCGGCCCAACAAAAGAAAGTGTGGCCTTGCCTCCTCTTTTAGAAG
CCGGGGAGAGGGAGGGCGGGGGAAGAGGGAGGAGAGGGAAATTCCGAACA
CGAGTTTTAGGTGGTTGA
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Synonyms
Publications