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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1379715..1381904 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04980.1 vs.
Match: EWM28890.1 (phosphoserine phosphatase [Nannochloropsis gaditana]) HSP 1 Score: 372.1 bits (954), Expect = 1.500e-99 Identity = 185/268 (69.03%), Postives = 216/268 (80.60%), Query Frame = 0
Query: 10 LARGAQGSTVATALRGGAAWCFVPW---SCSTHHRTRLPVRPLRAHISTHKGLAPQKAKDILKKAQAVCFDVDSTVCAEEGIDVLAEFLGQGQAVADLTAKAMGGTVLFQDALQGRLDLIKPSRAHFADCIAKHPATLSNGVKQFIDILHKRGTAVYLVSGGFRLMIEPVADRLSIPHHRIYANTVLFKEDGTYKGFDPQEPTSRDGGKPAVVKSLKERFGYVDVVMIGDGATDMQARPPADAFVGYGGVTVRENVAKGADWFVYNFQ 275
L + A +T T+L+ + F+P R R RP++A ST++GL P +AKD+LKKAQAVCFDVDSTVCAEEGIDVLA FLGQGQAVADLTAKAMGG+VLFQDAL+GRLDLIKPSRA +C+ +HPATLS GVK+F+ L RGTAVYLVSGGFRLMIEPVADRL +P RIYANT+LF E+G+YK FDP EPTSRDGGK AV+KSLKE+ GY DV+M+GDGATDMQARPPADAF+GYGGV VR+ V +GADWFV +FQ
Sbjct: 11 LTKQAWQTTSGTSLKMTVSLAFIPAFNIHVGAFSRVRYSSRPVKAGFSTYQGLDPDRAKDVLKKAQAVCFDVDSTVCAEEGIDVLAAFLGQGQAVADLTAKAMGGSVLFQDALKGRLDLIKPSRADIQNCLLRHPATLSPGVKEFVGRLQARGTAVYLVSGGFRLMIEPVADRLLVPRDRIYANTLLFAENGSYKDFDPNEPTSRDGGKAAVIKSLKEKHGYQDVLMVGDGATDMQARPPADAFIGYGGVVVRDPVLQGADWFVRSFQ 278
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G04980.1 ID=NO04G04980.1|Name=NO04G04980.1|organism=Nannochloropsis oceanica|type=mRNA|length=849bp ATGACTGTGGCTGGTAACGTGCTCCTTCTTGCGCGGGGAGCGCAGGGATC GACAGTGGCTACTGCCCTACGGGGAGGGGCCGCATGGTGCTTTGTGCCCT GGTCGTGCTCGACACATCATAGAACGCGGCTGCCTGTTCGTCCTTTGAGA GCGCATATCTCCACACACAAGGGTCTAGCCCCGCAAAAAGCCAAGGACAT ACTTAAGAAAGCACAGGCCGTGTGTTTCGATGTGGACTCCACCGTGTGCG CTGAGGAAGGCATCGATGTCCTGGCGGAGTTTCTGGGGCAAGGACAAGCC GTCGCTGACCTGACTGCTAAGGCCATGGGTGGCACGGTGCTTTTCCAAGA TGCCCTCCAAGGCCGCTTGGATTTAATCAAGCCCTCCCGCGCCCATTTCG CGGACTGCATCGCCAAGCACCCTGCCACGCTCTCTAACGGGGTGAAACAG TTCATCGACATTCTTCACAAGCGAGGCACAGCCGTCTACCTTGTGTCCGG GGGCTTCCGCCTGATGATCGAACCTGTGGCCGACCGCCTCTCTATCCCCC ACCATCGTATCTATGCCAACACGGTTCTGTTCAAAGAGGATGGCACCTAC AAGGGTTTCGACCCCCAAGAGCCCACTTCCCGTGACGGGGGGAAGCCAGC TGTGGTCAAGTCGCTGAAGGAACGATTTGGATACGTTGACGTGGTGATGA TAGGCGATGGCGCCACGGACATGCAGGCACGGCCCCCTGCAGATGCCTTC GTGGGGTATGGCGGTGTAACGGTCCGTGAAAACGTGGCCAAGGGCGCCGA CTGGTTTGTCTACAACTTCCAGGAGCTGATCGACGTGGTTAAGTCGTAA back to topprotein sequence of NO04G04980.1 >NO04G04980.1-protein ID=NO04G04980.1-protein|Name=NO04G04980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp MTVAGNVLLLARGAQGSTVATALRGGAAWCFVPWSCSTHHRTRLPVRPLR AHISTHKGLAPQKAKDILKKAQAVCFDVDSTVCAEEGIDVLAEFLGQGQA VADLTAKAMGGTVLFQDALQGRLDLIKPSRAHFADCIAKHPATLSNGVKQ FIDILHKRGTAVYLVSGGFRLMIEPVADRLSIPHHRIYANTVLFKEDGTY KGFDPQEPTSRDGGKPAVVKSLKERFGYVDVVMIGDGATDMQARPPADAF VGYGGVTVRENVAKGADWFVYNFQELIDVVKS* back to topmRNA from alignment at chr4:1379715..1381904- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G04980.1 ID=NO04G04980.1|Name=NO04G04980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp|location=Sequence derived from alignment at chr4:1379715..1381904- (Nannochloropsis oceanica) ATGACTGTGGCTGGTAACGTGCTCCTTCTTGCGCGGGGAGCGCAGGGATC
GACAGTGGCTACTGCCCTACGGGGAGGGGCCGCATGGTGCTTTGTGCCCT
GGTCGTGCTCGACACATCATAGAACGCGGCTGCCTGTTCGTCCTTTGAGA
GTACGTTTTCGTGTCGAGTGGGCCTGCCAGACACATGCAGATGCTCATCG
CATCCCTCCCTCCTCTCCCACTCTTCTCCTTTCCCTCCTAGGCGCATATC
TCCACACACAAGGGTCTAGCCCCGCAAAAAGCCAAGGACATACTTAAGAA
AGCACAGGTTAGCTGCCGAAGAAGAAGGTTTGGAGAGACCAAGGCCCTAA
TGCAAGGTGGTAGTTGTCTCTGACCTCTCTTCTCCCTTCCTTCCCGTCCC
TCCCTCCCCCCCTCCCTCCCCCCCCCCTCTTGGACGGCAGGCCGTGTGTT
TCGATGTGGACTCCACCGTGTGCGCTGAGGAAGGCATCGATGTCCTGGCG
GAGTTTCTGGGGCAAGGACAAGCCGTCGCTGACCTGACTGCTAAGTAAGA
AGGGAGGGACAGAGGGGAGGGCGGGAAGGAGAGCAAGACGCCAAGAGGAG
GGCACAGGAGAGGAGGTATGGCCTCGTGGAGGCAGCAGGGCGAGGATGGA
GCAAGAAAACGCTTCTCATCCGACATACGGACGCCAAATACATACATACA
TGCATCAATATGTACATATCCATTAAAATATCTATTCAAACGAAAATAAA
CGTACCGAAGAGAGTATCAACATTACAGTAAGGCACTCACTCTTCCGTCT
CCATTCCCCCTCTTCCCTCTGTCCCTCCCTCTTCCTTCCCTCTTTCCAGG
GCCATGGGTGGCACGGTGCTTTTCCAAGATGCCCTCCAAGGCCGCTTGGA
TTTAATCAAGCCCTCCCGCGCCCATTTCGCGGACTGCATCGCCAAGCACC
CTGCCACGCTCTCTAACGGGTAGGCATGTCCCTTCCTCCCTCCTGACTTA
CCCTTGTGTTTATAATCACTATTCCTATTGGACCGTGGCAGGGTGAAACA
GTTCATCGACATTCTTCACAAGCGAGGCACAGCCGTCTACCTTGTGTCCG
GGGGCTTCCGCCTGGTGCGTGCCGGGGGGGGGAAGGGAGGGAGGGAGGGA
AGGAGGGAAGGAGGGAAGGAGGGAAGGAGGGATGAAGGGAAGACTCTGTA
CTAAGGGGGGCTATTTCTAGCTCATTCCCCTATCCAGGAACGTATTAATA
TGTATGTTACCGATGTTTAAGTGGGTGGTAGATTGGCAGCGAAACCTGCA
CGTCCGCGTGTACGACAAAACCGGATCGACAAGACGAACACTCCCTCCAT
CGTCTCCTCACCCCTCCCTCCTCCTTCCCTCCCTTCATTCCTCCCTCAGA
TGATCGAACCTGTGGCCGACCGCCTCTCTATCCCCCACCATCGTATCTAT
GCCAACACGGTTCTGTTCAAAGAGGATGGCACCTACAAGGGTTTCGACCC
CCAAGAGCCCACTTCCCGTAAGGATGGAAAGAGGAGGGAAGGAGGGAGGG
AGGGAGGGAGGGAGGGGGTAGAGAGACGGGAAGCTAAGGTGGACGAAAGT
GAGAGAATTTCTCCGTAGCCAACACTCTTTTTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCGCCGCAGGTGACGGGGGGAAGCCAGCTGTGG
TCAAGTCGCTGAAGGAACGATTTGGATACGTTGACGTGGTGATGATAGGC
GATGGCGCCACGGACATGCAGGTAGGGAGGGAGGGAGGGAGGAAGGAGGG
AAGGAGGGAGGGGGAAGGGAGGGAGGGGAAAGGAGGGAGGGAGGGAGGGG
AGGGGAGGGGGTTTGAGACTTGAGCGATATGTACATATATATGTATGTAT
ATTTTATGTCATTGTTAATTTTCCTGGCCTTTCCTCCACATCCCTTCCCT
TTTGCTCCTTTTTCCACCTTCAGGCACGGCCCCCTGCAGATGCCTTCGTG
GGGTATGGCGGTGTAACGGTCCGTGAAAACGTGGCCAAGGGCGCCGACTG
GTTTGTCTACAACTTCCAGGTACGTGGGTGTTGGGCAAGAAGGCAATGAA
ATAAAAACGGGGGAGATAAGTGGATGCTGACTGGATCTGAATCTCCTTCC
TACCACATCACAGGAGCTGATCGACGTGGTTAAGTCGTAA back to topCoding sequence (CDS) from alignment at chr4:1379715..1381904- >NO04G04980.1 ID=NO04G04980.1|Name=NO04G04980.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr4:1379715..1381904- (Nannochloropsis oceanica) ATGACTGTGGCTGGTAACGTGCTCCTTCTTGCGCGGGGAGCGCAGGGATC GACAGTGGCTACTGCCCTACGGGGAGGGGCCGCATGGTGCTTTGTGCCCT GGTCGTGCTCGACACATCATAGAACGCGGCTGCCTGTTCGTCCTTTGAGA GCGCATATCTCCACACACAAGGGTCTAGCCCCGCAAAAAGCCAAGGACAT ACTTAAGAAAGCACAGGCCGTGTGTTTCGATGTGGACTCCACCGTGTGCG CTGAGGAAGGCATCGATGTCCTGGCGGAGTTTCTGGGGCAAGGACAAGCC GTCGCTGACCTGACTGCTAAGGCCATGGGTGGCACGGTGCTTTTCCAAGA TGCCCTCCAAGGCCGCTTGGATTTAATCAAGCCCTCCCGCGCCCATTTCG CGGACTGCATCGCCAAGCACCCTGCCACGCTCTCTAACGGGGTGAAACAG TTCATCGACATTCTTCACAAGCGAGGCACAGCCGTCTACCTTGTGTCCGG GGGCTTCCGCCTGATGATCGAACCTGTGGCCGACCGCCTCTCTATCCCCC ACCATCGTATCTATGCCAACACGGTTCTGTTCAAAGAGGATGGCACCTAC AAGGGTTTCGACCCCCAAGAGCCCACTTCCCGTGACGGGGGGAAGCCAGC TGTGGTCAAGTCGCTGAAGGAACGATTTGGATACGTTGACGTGGTGATGA TAGGCGATGGCGCCACGGACATGCAGGCACGGCCCCCTGCAGATGCCTTC GTGGGGTATGGCGGTGTAACGGTCCGTGAAAACGTGGCCAAGGGCGCCGA CTGGTTTGTCTACAACTTCCAGGAGCTGATCGACGTGGTTAAGTCGTAA back to top
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