NO04G04740.1, NO04G04740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04740.1
Unique NameNO04G04740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1059
Alignment locationchr4:1286577..1287790 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1286577..1287790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04740.1 vs.
Match: EWM28860.1 (mitochondrial carrier protein [Nannochloropsis gaditana])

HSP 1 Score: 397.5 bits (1020), Expect = 4.300e-107
Identity = 225/339 (66.37%), Postives = 248/339 (73.16%), Query Frame = 0 
Query:   14 SSPRPSPSSHFSSQPPPSTTASGSTTDTTTANVVDAHKQVLAGSIAAFVSTVVCHPIDVLRTELQIRTTGTTARVCARRIRDAEGFLGFYKGLSAPLAAQAVYKAIIFGTNSTAQEFLISHRRKRFRPSSSSSSPSLPSSLLTYPDIFLCGVVAGGVNAVVVSPVELIRNRLVAHKTHFAGPRDCLQQAWREGGVRGLWRGLGPTLWRDGPGVGAWFLAFAAGKDWLLNTKKERARLRGEGGREGDVVGLGVVELLLAGSAAGVAFWTVALPFDTVKSVMQVKGVKGRVGKEGMGAVARRLVREGGVGRLFRGWPAAFGRAVPGSAATLATFDWVKDRL 353
            SSP P   S  + + PP             +  ++A KQVLAGSIAAFVST+VCHPIDVLRTELQ      TAR C RRI  AEG  GFYKGLSAPLAAQAVYKAIIFGTNSTAQ+ L++  +KR RP SS+ SP      L+YP+IFLCG ++GGVNA+VV+PVEL+RNRLV     ++GPRDC+ QAWR GG RGLW GL PTL RDGPGVGAWFLAFAAGKD LL  KK    LRG G RE     LGV  LLLAGS AGVAFWTVALPFDTVKSVMQV GV     +EGMG V  RLVREGG+ RLFRGW  AFGRAVPGSAATLATFD VKD L
Sbjct:    9 SSPAPLTKSTVTKRSPPELGQLSPHHVERESRTINARKQVLAGSIAAFVSTLVCHPIDVLRTELQTTQETLTARECLRRIWRAEGMQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSP----QCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSHGVYSGPRDCVGQAWRGGGFRGLWNGLLPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSTKGLRG-GKREAGEEKLGVGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAGVGSEGKREGMGQVIERLVREGGLRRLFRGWQGAFGRAVPGSAATLATFDVVKDWL 342
The following BLAST results are available for this feature:
BLAST of NO04G04740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
1002003004005006007008009001000Expect = 4.30e-107 / Id = 66.37SequenceEWM28860.1
Match NameE-valueIdentityDescription
EWM28860.14.300e-10766.37mitochondrial carrier protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04740NO04G04740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04740.1NO04G04740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04740.1.cds1NO04G04740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04740.1.cds2NO04G04740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04740.1 ID=NO04G04740.1|Name=NO04G04740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp
ATGCCAGGAAGCAGCAGCAGTGGCTTGATGGGGCATGTCTCGTCGCCGCG
ACCGTCCCCTTCGTCCCACTTCTCCTCCCAGCCTCCCCCCTCTACAACGG
CCAGCGGCAGCACCACCGACACCACTACTGCCAACGTCGTTGACGCCCAC
AAGCAAGTTCTTGCCGGTTCCATTGCTGCCTTTGTCTCCACCGTCGTCTG
TCACCCCATCGATGTCCTACGCACCGAGCTGCAGATTCGGACGACTGGTA
CCACGGCCCGGGTCTGTGCCCGTCGCATTCGCGATGCCGAAGGCTTTTTA
GGGTTCTACAAGGGGTTAAGTGCCCCATTGGCAGCGCAGGCAGTGTACAA
AGCTATCATCTTCGGCACCAATTCAACCGCCCAAGAATTCCTCATCTCCC
ATCGTCGCAAGCGATTCCGCCCTTCCTCCTCCTCCTCCTCTCCCTCCCTC
CCTTCTTCCCTCCTCACCTACCCCGACATATTCCTCTGTGGTGTCGTGGC
CGGAGGAGTCAATGCCGTCGTCGTATCACCCGTCGAATTGATTCGAAATC
GTTTGGTGGCCCATAAAACGCATTTTGCCGGGCCTCGCGATTGCTTGCAG
CAGGCGTGGAGGGAGGGAGGGGTGAGGGGGTTGTGGAGGGGCTTAGGGCC
AACGTTATGGAGGGACGGACCAGGGGTAGGGGCATGGTTTCTGGCGTTTG
CTGCCGGAAAAGATTGGCTGTTGAACACAAAGAAGGAGAGGGCTCGACTT
CGGGGGGAGGGAGGGAGGGAGGGCGATGTGGTGGGATTGGGGGTTGTGGA
GCTCCTGCTGGCGGGATCGGCGGCGGGGGTGGCGTTTTGGACAGTGGCCT
TGCCGTTTGACACGGTGAAGAGCGTGATGCAGGTTAAGGGGGTGAAAGGG
AGGGTTGGAAAGGAGGGGATGGGGGCAGTGGCACGTAGGCTGGTGAGGGA
GGGAGGGGTGGGGAGGTTGTTTCGAGGGTGGCCGGCGGCGTTTGGACGGG
CGGTGCCGGGCTCAGCGGCGACGCTAGCGACATTTGATTGGGTGAAGGAC
AGGTTGTGA
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protein sequence of NO04G04740.1

>NO04G04740.1-protein ID=NO04G04740.1-protein|Name=NO04G04740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MPGSSSSGLMGHVSSPRPSPSSHFSSQPPPSTTASGSTTDTTTANVVDAH
KQVLAGSIAAFVSTVVCHPIDVLRTELQIRTTGTTARVCARRIRDAEGFL
GFYKGLSAPLAAQAVYKAIIFGTNSTAQEFLISHRRKRFRPSSSSSSPSL
PSSLLTYPDIFLCGVVAGGVNAVVVSPVELIRNRLVAHKTHFAGPRDCLQ
QAWREGGVRGLWRGLGPTLWRDGPGVGAWFLAFAAGKDWLLNTKKERARL
RGEGGREGDVVGLGVVELLLAGSAAGVAFWTVALPFDTVKSVMQVKGVKG
RVGKEGMGAVARRLVREGGVGRLFRGWPAAFGRAVPGSAATLATFDWVKD
RL*
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mRNA from alignment at chr4:1286577..1287790+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04740.1 ID=NO04G04740.1|Name=NO04G04740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1214bp|location=Sequence derived from alignment at chr4:1286577..1287790+ (Nannochloropsis oceanica)
ATGCCAGGAAGCAGCAGCAGTGGCTTGATGGGGCATGTCTCGTCGCCGCG
ACCGTCCCCTTCGTCCCACTTCTCCTCCCAGCCTCCCCCCTCTACAACGG
CCAGCGGCAGCACCACCGACACCACTACTGCCAACGTCGTTGACGCCCAC
AAGCAAGTTCTTGCCGGTTCCATTGCTGCCTTTGTCTCCACCGTCGTCTG
TCACCCCATCGATGTCCTACGCACCGAGCTGCAGATTCGGACGACTGGTA
CCACGGCCCGGGTCTGTGCCCGTCGCATTCGCGATGCCGAAGGCTTTTTA
GGGTTCTACAAGGGGTTAAGTGCCCCATTGGCAGCGCAGGCAGTGTACAA
AGCGTAAGTTTTCCTCCGTATACTTATGGTATCTTCTTGTTATTCCTCTG
TCCCTCCATCCCGTTCAAACTAAATGCCTCTTTTACCTCTTTCCTCCCGT
CACATCTCCGTCCTTCCCTCTCATCCTTCCTTGTACTCGCTCTCACCTCC
TCACATAGTATCATCTTCGGCACCAATTCAACCGCCCAAGAATTCCTCAT
CTCCCATCGTCGCAAGCGATTCCGCCCTTCCTCCTCCTCCTCCTCTCCCT
CCCTCCCTTCTTCCCTCCTCACCTACCCCGACATATTCCTCTGTGGTGTC
GTGGCCGGAGGAGTCAATGCCGTCGTCGTATCACCCGTCGAATTGATTCG
AAATCGTTTGGTGGCCCATAAAACGCATTTTGCCGGGCCTCGCGATTGCT
TGCAGCAGGCGTGGAGGGAGGGAGGGGTGAGGGGGTTGTGGAGGGGCTTA
GGGCCAACGTTATGGAGGGACGGACCAGGGGTAGGGGCATGGTTTCTGGC
GTTTGCTGCCGGAAAAGATTGGCTGTTGAACACAAAGAAGGAGAGGGCTC
GACTTCGGGGGGAGGGAGGGAGGGAGGGCGATGTGGTGGGATTGGGGGTT
GTGGAGCTCCTGCTGGCGGGATCGGCGGCGGGGGTGGCGTTTTGGACAGT
GGCCTTGCCGTTTGACACGGTGAAGAGCGTGATGCAGGTTAAGGGGGTGA
AAGGGAGGGTTGGAAAGGAGGGGATGGGGGCAGTGGCACGTAGGCTGGTG
AGGGAGGGAGGGGTGGGGAGGTTGTTTCGAGGGTGGCCGGCGGCGTTTGG
ACGGGCGGTGCCGGGCTCAGCGGCGACGCTAGCGACATTTGATTGGGTGA
AGGACAGGTTGTGA
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Coding sequence (CDS) from alignment at chr4:1286577..1287790+

>NO04G04740.1 ID=NO04G04740.1|Name=NO04G04740.1|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr4:1286577..1287790+ (Nannochloropsis oceanica)
ATGCCAGGAAGCAGCAGCAGTGGCTTGATGGGGCATGTCTCGTCGCCGCG
ACCGTCCCCTTCGTCCCACTTCTCCTCCCAGCCTCCCCCCTCTACAACGG
CCAGCGGCAGCACCACCGACACCACTACTGCCAACGTCGTTGACGCCCAC
AAGCAAGTTCTTGCCGGTTCCATTGCTGCCTTTGTCTCCACCGTCGTCTG
TCACCCCATCGATGTCCTACGCACCGAGCTGCAGATTCGGACGACTGGTA
CCACGGCCCGGGTCTGTGCCCGTCGCATTCGCGATGCCGAAGGCTTTTTA
GGGTTCTACAAGGGGTTAAGTGCCCCATTGGCAGCGCAGGCAGTGTACAA
AGCTATCATCTTCGGCACCAATTCAACCGCCCAAGAATTCCTCATCTCCC
ATCGTCGCAAGCGATTCCGCCCTTCCTCCTCCTCCTCCTCTCCCTCCCTC
CCTTCTTCCCTCCTCACCTACCCCGACATATTCCTCTGTGGTGTCGTGGC
CGGAGGAGTCAATGCCGTCGTCGTATCACCCGTCGAATTGATTCGAAATC
GTTTGGTGGCCCATAAAACGCATTTTGCCGGGCCTCGCGATTGCTTGCAG
CAGGCGTGGAGGGAGGGAGGGGTGAGGGGGTTGTGGAGGGGCTTAGGGCC
AACGTTATGGAGGGACGGACCAGGGGTAGGGGCATGGTTTCTGGCGTTTG
CTGCCGGAAAAGATTGGCTGTTGAACACAAAGAAGGAGAGGGCTCGACTT
CGGGGGGAGGGAGGGAGGGAGGGCGATGTGGTGGGATTGGGGGTTGTGGA
GCTCCTGCTGGCGGGATCGGCGGCGGGGGTGGCGTTTTGGACAGTGGCCT
TGCCGTTTGACACGGTGAAGAGCGTGATGCAGGTTAAGGGGGTGAAAGGG
AGGGTTGGAAAGGAGGGGATGGGGGCAGTGGCACGTAGGCTGGTGAGGGA
GGGAGGGGTGGGGAGGTTGTTTCGAGGGTGGCCGGCGGCGTTTGGACGGG
CGGTGCCGGGCTCAGCGGCGACGCTAGCGACATTTGATTGGGTGAAGGAC
AGGTTGTGA
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Synonyms
Publications