NO04G04090.2, NO04G04090.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04090.2
Unique NameNO04G04090.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1721
Alignment locationchr4:1111116..1113009 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1111116..1113009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G04090.2 vs.
Match: EWM28671.1 (zinc ion binding protein [Nannochloropsis gaditana])

HSP 1 Score: 350.5 bits (898), Expect = 6.600e-93
Identity = 193/377 (51.19%), Postives = 236/377 (62.60%), Query Frame = 0 
Query:   27 KCRPWSEADFFHRLRTFTPQHWFGKSLLVAPPRCAAQGWVNSSTDTLECQICQATLTLPSNSEPAPDILSSSHSITCPWAHQACEPDVSHFPLVTAECLLTHTARRMGGIRPLLQAYKGDLTVKVPEEFNKLMAGCKIQGEGVGEGRDGVGSLTLEALARRVEECIEDDAGGGTAGAGAREGGGVTVEEEKREDEQALELKGNGLILALHGWEAGPPPR--QPESGGRGGR---GWALICGMCGRRVEVGRVVDRRSSLGSGRMMEGGGEKGEDVGRAKARRVGGMAGPAAFDVMNQHRWWCAWVSRGLDEKGQPGWRLTLKTLVGRMRRMVELG--KLMEDEGDSG-------DRSWGVGSSSSSYARAKRLLDGM 390
            KCRPWSEADFFHRLRTFTPQ WFGKSL + PPRCAAQGWVN   DTL C++CQA LT     EPAPD+LS+SH++TCPW  QACE +VSHFPLVTA+ LL+H A R+ G R LL+AY G  ++ +PEE   L+ G K++     +       LTL+ LA RV++ ++D A   +A  G  E GG   E+EKR            L LAL GWEA P  +    +SGG  GR    W L CG+CGR ++  R+ DRR S G GR  EG G K E + R KAR V    GP  FD ++QHRWWC WVSRG+DEKG  GWR  LK +VGRMR++ +LG   L E E D G       D S    S SS Y++ K L+D M
Sbjct:   79 KCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHTDGHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQS----ARLTLDILADRVQDWLQDVA---SAAPGVGEVGG---EDEKR----------GALTLALLGWEAFPLSKGSPTQSGGNIGRPRGDWVLKCGLCGRSIQASRIADRRGSFGRGRGSEGEG-KEEQIPRVKARSVESPLGPLTFDAVSQHRWWCPWVSRGMDEKGMLGWRQALKAVVGRMRQVEDLGLLGLSEQEADMGKHNGLGLDDSLNSPSYSSMYSKVKCLMDSM 434
The following BLAST results are available for this feature:
BLAST of NO04G04090.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600Expect = 6.60e-93 / Id = 51.19SequenceEWM28671.1
Match NameE-valueIdentityDescription
EWM28671.16.600e-9351.19zinc ion binding protein [Nannochloropsis gaditana... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04090NO04G04090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04090.2NO04G04090.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04090.2.cds1NO04G04090.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04090.2.cds2NO04G04090.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04090.2 ID=NO04G04090.2|Name=NO04G04090.2|organism=Nannochloropsis oceanica|type=mRNA|length=1721bp
ACACAAGCGTCTTCGCCATCATCGCCCCTCAAGAATTAAATGCTCAACAT
CCCACAGCATCCCACGCGCTGTCCATCGGTGCAACAAGACGACGTACATT
AGTAGCGACATCAGTCCTCGCAATGGCCACAACGCGGCGCGATCCCAGTC
AGGAAGACGTGGATGAAGCATCCTCGACTCTACGTGCCTGCGTCGATCGA
GACCTTCTGGCCGAAATTTGCCATGGGGACAGCCTCGGAGCTGGTAACCA
CCGCGCATCCACGCACTCCTCGTTGGTATCGACATCATCTCCGCCTTGGA
AAGGTACGTGTGGCGGCGGTATAGTGGTTTGTGCTGATGCAATGCGTGGA
TAGAATAGTTTCTTTGAGCATCGCTTTCATCTTTACGCCCACGGTCTGCC
TCAACTTTCAACGCCCTTGTGTCCACACGCCCTCAGTAAGCAGTAACATG
GAATTACGCTGCATAACAGCACATCGATCACCACAAAGCATTCCATATGC
ATGCCCTCACTGGTTATATCCTCCTCCTTTCCGAACACCGACATATCTCT
CCCGAACATAATAGACGAGTCCCTCCACAAATGCCGTCCTTGGTCCGAAG
CAGATTTCTTCCACCGCCTTCGCACATTCACACCACAACATTGGTTTGGC
AAGAGCTTGCTCGTGGCACCCCCACGATGCGCGGCGCAGGGATGGGTAAA
CTCGTCGACGGATACGTTGGAATGTCAAATATGTCAAGCCACCCTCACCC
TTCCCAGCAACTCGGAACCCGCTCCTGACATCCTCTCCTCCTCCCACTCC
ATCACCTGTCCCTGGGCCCACCAAGCTTGCGAGCCCGATGTTTCACATTT
CCCTCTTGTAACCGCTGAGTGTTTGCTTACTCATACGGCGCGTCGCATGG
GCGGCATTCGTCCTCTTCTCCAAGCATACAAAGGAGATTTAACAGTTAAA
GTACCTGAGGAATTCAACAAGCTGATGGCTGGGTGTAAGATTCAGGGGGA
AGGAGTGGGGGAGGGGAGAGACGGAGTGGGTAGTTTGACCCTGGAGGCGC
TGGCACGGCGGGTGGAGGAGTGTATTGAGGATGATGCTGGTGGTGGTACA
GCTGGTGCTGGAGCAAGGGAAGGAGGAGGGGTTACGGTGGAGGAGGAGAA
GAGGGAAGACGAGCAAGCATTGGAGTTGAAGGGGAATGGGTTGATATTGG
CTTTGCATGGATGGGAGGCAGGGCCTCCACCACGGCAGCCAGAGAGTGGA
GGAAGAGGTGGAAGAGGTTGGGCGTTAATCTGTGGTATGTGCGGACGTCG
GGTAGAAGTGGGGAGAGTGGTGGATCGAAGGAGCAGCTTGGGGAGTGGTC
GTATGATGGAAGGAGGGGGAGAAAAAGGCGAGGATGTAGGAAGGGCCAAG
GCGCGACGAGTTGGAGGGATGGCAGGACCCGCGGCGTTTGATGTCATGAA
CCAGCATCGATGGTGGTGTGCGTGGGTGTCGCGGGGGCTGGATGAGAAGG
GCCAGCCGGGATGGCGGCTGACGCTCAAGACATTGGTGGGCCGCATGCGT
CGGATGGTGGAGCTAGGGAAATTGATGGAGGACGAGGGTGATAGTGGGGA
TAGGAGTTGGGGTGTGGGGTCGTCGTCGTCGTCGTACGCACGAGCGAAGA
GATTGCTTGATGGCATGTGATAATAAATAGAATTTGTCGGAAAGAAATTC
AAGACAAAAGAGCTGCGTGAA
back to top

protein sequence of NO04G04090.2

>NO04G04090.2-protein ID=NO04G04090.2-protein|Name=NO04G04090.2|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MPSLVISSSFPNTDISLPNIIDESLHKCRPWSEADFFHRLRTFTPQHWFG
KSLLVAPPRCAAQGWVNSSTDTLECQICQATLTLPSNSEPAPDILSSSHS
ITCPWAHQACEPDVSHFPLVTAECLLTHTARRMGGIRPLLQAYKGDLTVK
VPEEFNKLMAGCKIQGEGVGEGRDGVGSLTLEALARRVEECIEDDAGGGT
AGAGAREGGGVTVEEEKREDEQALELKGNGLILALHGWEAGPPPRQPESG
GRGGRGWALICGMCGRRVEVGRVVDRRSSLGSGRMMEGGGEKGEDVGRAK
ARRVGGMAGPAAFDVMNQHRWWCAWVSRGLDEKGQPGWRLTLKTLVGRMR
RMVELGKLMEDEGDSGDRSWGVGSSSSSYARAKRLLDGM*
back to top

mRNA from alignment at chr4:1111116..1113009-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04090.2 ID=NO04G04090.2|Name=NO04G04090.2|organism=Nannochloropsis oceanica|type=mRNA|length=1894bp|location=Sequence derived from alignment at chr4:1111116..1113009- (Nannochloropsis oceanica)
ACACAAGCGTCTTCGCCATCATCGCCCCTCAAGAATTAAATGCTCAACAT
CCCACAGCATCCCACGCGCTGTCCATCGGTGCAACAAGACGACGTACATT
AGTAGCGACATCAGTCCTCGCAATGGCCACAACGCGGCGCGATCCCAGTC
AGGAAGACGTGGATGAAGCATCCTCGACTCTACGTGCCTGCGTCGATCGA
GACCTTCTGGCCGAAATTTGCCATGGGGACAGCCTCGGAGCTGGTAACCA
CCGCGCATCCACGCACTCCTCGTTGGTATCGACATCATCTCCGCCTTGGA
AAGGTACGTGTGGCGGCGGTATAGTGGTTTGTGCTGATGCAATGCGTGGA
TAGAATAGTTTCTTTGAGCATCGCTTTCATCTTTACGCCCACGGTCTGCC
TCAACTTTCAACGCCCTTGTGTCCACACGCCCTCAGTAAGCAGTAACATG
GAATTACGCTGCATAACAGCACATCGATCACCACAAAGCATTCCATATGC
ATGCCCTCACTGGTTATATCCTCCTCCTTTCCGAACACCGACATATCTCT
CCCGAACATAATAGACGAGTCCCTCCACAAATGCCGTCCTTGGTCCGAAG
CAGATTTCTTCCACCGCCTTCGCACATTCACACCACAACATTGGTTTGGC
AAGAGCTTGCTCGTGGCACCCCCACGATGCGCGGCGCAGGGATGGGTAAA
CTCGTCGACGGATACGTTGGAATGTCAAATGTACGTCATGGAATGGCTTC
GTCGGAAATACGTCGCCTCCCCTCTTTCTGTATATTTGGTGTTTATGTCA
GCTCATGATCATTTGTTTGATATCAGCATGAAGATAAAAACGAAGATGAT
TTTTCTCATTCATTCCCTCCATCATCCTCTTCCTTTCGCTGTACAAAATG
CAGATGTCAAGCCACCCTCACCCTTCCCAGCAACTCGGAACCCGCTCCTG
ACATCCTCTCCTCCTCCCACTCCATCACCTGTCCCTGGGCCCACCAAGCT
TGCGAGCCCGATGTTTCACATTTCCCTCTTGTAACCGCTGAGTGTTTGCT
TACTCATACGGCGCGTCGCATGGGCGGCATTCGTCCTCTTCTCCAAGCAT
ACAAAGGAGATTTAACAGTTAAAGTACCTGAGGAATTCAACAAGCTGATG
GCTGGGTGTAAGATTCAGGGGGAAGGAGTGGGGGAGGGGAGAGACGGAGT
GGGTAGTTTGACCCTGGAGGCGCTGGCACGGCGGGTGGAGGAGTGTATTG
AGGATGATGCTGGTGGTGGTACAGCTGGTGCTGGAGCAAGGGAAGGAGGA
GGGGTTACGGTGGAGGAGGAGAAGAGGGAAGACGAGCAAGCATTGGAGTT
GAAGGGGAATGGGTTGATATTGGCTTTGCATGGATGGGAGGCAGGGCCTC
CACCACGGCAGCCAGAGAGTGGAGGAAGAGGTGGAAGAGGTTGGGCGTTA
ATCTGTGGTATGTGCGGACGTCGGGTAGAAGTGGGGAGAGTGGTGGATCG
AAGGAGCAGCTTGGGGAGTGGTCGTATGATGGAAGGAGGGGGAGAAAAAG
GCGAGGATGTAGGAAGGGCCAAGGCGCGACGAGTTGGAGGGATGGCAGGA
CCCGCGGCGTTTGATGTCATGAACCAGCATCGATGGTGGTGTGCGTGGGT
GTCGCGGGGGCTGGATGAGAAGGGCCAGCCGGGATGGCGGCTGACGCTCA
AGACATTGGTGGGCCGCATGCGTCGGATGGTGGAGCTAGGGAAATTGATG
GAGGACGAGGGTGATAGTGGGGATAGGAGTTGGGGTGTGGGGTCGTCGTC
GTCGTCGTACGCACGAGCGAAGAGATTGCTTGATGGCATGTGATAATAAA
TAGAATTTGTCGGAAAGAAATTCAAGACAAAAGAGCTGCGTGAA
back to top

Coding sequence (CDS) from alignment at chr4:1111116..1113009-

>NO04G04090.2 ID=NO04G04090.2|Name=NO04G04090.2|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at chr4:1111116..1113009- (Nannochloropsis oceanica)
ATGCCCTCACTGGTTATATCCTCCTCCTTTCCGAACACCGACATATCTCT
CCCGAACATAATAGACGAGTCCCTCCACAAATGCCGTCCTTGGTCCGAAG
CAGATTTCTTCCACCGCCTTCGCACATTCACACCACAACATTGGTTTGGC
AAGAGCTTGCTCGTGGCACCCCCACGATGCGCGGCGCAGGGATGGGTAAA
CTCGTCGACGGATACGTTGGAATGTCAAATATGTCAAGCCACCCTCACCC
TTCCCAGCAACTCGGAACCCGCTCCTGACATCCTCTCCTCCTCCCACTCC
ATCACCTGTCCCTGGGCCCACCAAGCTTGCGAGCCCGATGTTTCACATTT
CCCTCTTGTAACCGCTGAGTGTTTGCTTACTCATACGGCGCGTCGCATGG
GCGGCATTCGTCCTCTTCTCCAAGCATACAAAGGAGATTTAACAGTTAAA
GTACCTGAGGAATTCAACAAGCTGATGGCTGGGTGTAAGATTCAGGGGGA
AGGAGTGGGGGAGGGGAGAGACGGAGTGGGTAGTTTGACCCTGGAGGCGC
TGGCACGGCGGGTGGAGGAGTGTATTGAGGATGATGCTGGTGGTGGTACA
GCTGGTGCTGGAGCAAGGGAAGGAGGAGGGGTTACGGTGGAGGAGGAGAA
GAGGGAAGACGAGCAAGCATTGGAGTTGAAGGGGAATGGGTTGATATTGG
CTTTGCATGGATGGGAGGCAGGGCCTCCACCACGGCAGCCAGAGAGTGGA
GGAAGAGGTGGAAGAGGTTGGGCGTTAATCTGTGGTATGTGCGGACGTCG
GGTAGAAGTGGGGAGAGTGGTGGATCGAAGGAGCAGCTTGGGGAGTGGTC
GTATGATGGAAGGAGGGGGAGAAAAAGGCGAGGATGTAGGAAGGGCCAAG
GCGCGACGAGTTGGAGGGATGGCAGGACCCGCGGCGTTTGATGTCATGAA
CCAGCATCGATGGTGGTGTGCGTGGGTGTCGCGGGGGCTGGATGAGAAGG
GCCAGCCGGGATGGCGGCTGACGCTCAAGACATTGGTGGGCCGCATGCGT
CGGATGGTGGAGCTAGGGAAATTGATGGAGGACGAGGGTGATAGTGGGGA
TAGGAGTTGGGGTGTGGGGTCGTCGTCGTCGTCGTACGCACGAGCGAAGA
GATTGCTTGATGGCATGTGA
back to top
Synonyms
Publications