NO04G04090.1, NO04G04090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04090.1
Unique NameNO04G04090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1409
Alignment locationchr4:1111116..1112958 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1111116..1112958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04090.1 vs.
Match: EWM28671.1 (zinc ion binding protein [Nannochloropsis gaditana])

HSP 1 Score: 413.7 bits (1062), Expect = 7.000e-112
Identity = 229/438 (52.28%), Postives = 279/438 (63.70%), Query Frame = 0 
Query:    5 RRDPSQEDVDEASSTLRACVDRDLLAEICHGDSLGAGNHRASTHSSLVSTSSPPWKDESLHKCRPWSEADFFHRLRTFTPQHWFGKSLLVAPPRCAAQGWVNSSTDTLECQICQATLTLPSNSEPAPDILSSSHSITCPWAHQACEPDVSHFPLVTAECLLTHTARRMGGIRPLLQAYKGDLTVKVPEEFNKLMAGCKIQGEGVGEGRDGVGSLTLEALARRVEECIEDDAGGGTAGAGAREGGGVTVEEEKREDEQALELKGNGLILALHGWEAGPPPR--QPESGGRGGR---GWALICGMCGRRVEVGRVVDRRSSLGSGRMMEGGGEKGEDVGRAKARRVGGMAGPAAFDVMNQHRWWCAWVSRGLDEKGQPGWRLTLKTLVGRMRRMVELG--KLMEDEGDSG-------DRSWGVGSSSSSYARAKRLLDGM 429
            RRDPSQED+D A+STLRACVDRDLL+EICHGD +     + S    L+ST   PWK E+  KCRPWSEADFFHRLRTFTPQ WFGKSL + PPRCAAQGWVN   DTL C++CQA LT     EPAPD+LS+SH++TCPW  QACE +VSHFPLVTA+ LL+H A R+ G R LL+AY G  ++ +PEE   L+ G K++     +       LTL+ LA RV++ ++D A   +A  G  E GG   E+EKR            L LAL GWEA P  +    +SGG  GR    W L CG+CGR ++  R+ DRR S G GR  EG G K E + R KAR V    GP  FD ++QHRWWC WVSRG+DEKG  GWR  LK +VGRMR++ +LG   L E E D G       D S    S SS Y++ K L+D M
Sbjct:   23 RRDPSQEDIDHAASTLRACVDRDLLSEICHGDDV-----KPSYVPHLLSTFPSPWKGENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHTDGHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQS----ARLTLDILADRVQDWLQDVA---SAAPGVGEVGG---EDEKR----------GALTLALLGWEAFPLSKGSPTQSGGNIGRPRGDWVLKCGLCGRSIQASRIADRRGSFGRGRGSEGEG-KEEQIPRVKARSVESPLGPLTFDAVSQHRWWCPWVSRGMDEKGMLGWRQALKAVVGRMRQVEDLGLLGLSEQEADMGKHNGLGLDDSLNSPSYSSMYSKVKCLMDSM 434
The following BLAST results are available for this feature:
BLAST of NO04G04090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400Expect = 7.00e-112 / Id = 52.28SequenceEWM28671.1
Match NameE-valueIdentityDescription
EWM28671.17.000e-11252.28zinc ion binding protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04090NO04G04090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04090.1NO04G04090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04090.1.cds1NO04G04090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04090.1.cds2NO04G04090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04090.1.cds3NO04G04090.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04090.1 ID=NO04G04090.1|Name=NO04G04090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp
CCACAGCATCCCACGCGCTGTCCATCGGTGCAACAAGACGACGTACATTA
GTAGCGACATCAGTCCTCGCAATGGCCACAACGCGGCGCGATCCCAGTCA
GGAAGACGTGGATGAAGCATCCTCGACTCTACGTGCCTGCGTCGATCGAG
ACCTTCTGGCCGAAATTTGCCATGGGGACAGCCTCGGAGCTGGTAACCAC
CGCGCATCCACGCACTCCTCGTTGGTATCGACATCATCTCCGCCTTGGAA
AGACGAGTCCCTCCACAAATGCCGTCCTTGGTCCGAAGCAGATTTCTTCC
ACCGCCTTCGCACATTCACACCACAACATTGGTTTGGCAAGAGCTTGCTC
GTGGCACCCCCACGATGCGCGGCGCAGGGATGGGTAAACTCGTCGACGGA
TACGTTGGAATGTCAAATATGTCAAGCCACCCTCACCCTTCCCAGCAACT
CGGAACCCGCTCCTGACATCCTCTCCTCCTCCCACTCCATCACCTGTCCC
TGGGCCCACCAAGCTTGCGAGCCCGATGTTTCACATTTCCCTCTTGTAAC
CGCTGAGTGTTTGCTTACTCATACGGCGCGTCGCATGGGCGGCATTCGTC
CTCTTCTCCAAGCATACAAAGGAGATTTAACAGTTAAAGTACCTGAGGAA
TTCAACAAGCTGATGGCTGGGTGTAAGATTCAGGGGGAAGGAGTGGGGGA
GGGGAGAGACGGAGTGGGTAGTTTGACCCTGGAGGCGCTGGCACGGCGGG
TGGAGGAGTGTATTGAGGATGATGCTGGTGGTGGTACAGCTGGTGCTGGA
GCAAGGGAAGGAGGAGGGGTTACGGTGGAGGAGGAGAAGAGGGAAGACGA
GCAAGCATTGGAGTTGAAGGGGAATGGGTTGATATTGGCTTTGCATGGAT
GGGAGGCAGGGCCTCCACCACGGCAGCCAGAGAGTGGAGGAAGAGGTGGA
AGAGGTTGGGCGTTAATCTGTGGTATGTGCGGACGTCGGGTAGAAGTGGG
GAGAGTGGTGGATCGAAGGAGCAGCTTGGGGAGTGGTCGTATGATGGAAG
GAGGGGGAGAAAAAGGCGAGGATGTAGGAAGGGCCAAGGCGCGACGAGTT
GGAGGGATGGCAGGACCCGCGGCGTTTGATGTCATGAACCAGCATCGATG
GTGGTGTGCGTGGGTGTCGCGGGGGCTGGATGAGAAGGGCCAGCCGGGAT
GGCGGCTGACGCTCAAGACATTGGTGGGCCGCATGCGTCGGATGGTGGAG
CTAGGGAAATTGATGGAGGACGAGGGTGATAGTGGGGATAGGAGTTGGGG
TGTGGGGTCGTCGTCGTCGTCGTACGCACGAGCGAAGAGATTGCTTGATG
GCATGTGATAATAAATAGAATTTGTCGGAAAGAAATTCAAGACAAAAGAG
CTGCGTGAA
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protein sequence of NO04G04090.1

>NO04G04090.1-protein ID=NO04G04090.1-protein|Name=NO04G04090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MATTRRDPSQEDVDEASSTLRACVDRDLLAEICHGDSLGAGNHRASTHSS
LVSTSSPPWKDESLHKCRPWSEADFFHRLRTFTPQHWFGKSLLVAPPRCA
AQGWVNSSTDTLECQICQATLTLPSNSEPAPDILSSSHSITCPWAHQACE
PDVSHFPLVTAECLLTHTARRMGGIRPLLQAYKGDLTVKVPEEFNKLMAG
CKIQGEGVGEGRDGVGSLTLEALARRVEECIEDDAGGGTAGAGAREGGGV
TVEEEKREDEQALELKGNGLILALHGWEAGPPPRQPESGGRGGRGWALIC
GMCGRRVEVGRVVDRRSSLGSGRMMEGGGEKGEDVGRAKARRVGGMAGPA
AFDVMNQHRWWCAWVSRGLDEKGQPGWRLTLKTLVGRMRRMVELGKLMED
EGDSGDRSWGVGSSSSSYARAKRLLDGM*
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mRNA from alignment at chr4:1111116..1112958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04090.1 ID=NO04G04090.1|Name=NO04G04090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1843bp|location=Sequence derived from alignment at chr4:1111116..1112958- (Nannochloropsis oceanica)
CCACAGCATCCCACGCGCTGTCCATCGGTGCAACAAGACGACGTACATTA
GTAGCGACATCAGTCCTCGCAATGGCCACAACGCGGCGCGATCCCAGTCA
GGAAGACGTGGATGAAGCATCCTCGACTCTACGTGCCTGCGTCGATCGAG
ACCTTCTGGCCGAAATTTGCCATGGGGACAGCCTCGGAGCTGGTAACCAC
CGCGCATCCACGCACTCCTCGTTGGTATCGACATCATCTCCGCCTTGGAA
AGGTACGTGTGGCGGCGGTATAGTGGTTTGTGCTGATGCAATGCGTGGAT
AGAATAGTTTCTTTGAGCATCGCTTTCATCTTTACGCCCACGGTCTGCCT
CAACTTTCAACGCCCTTGTGTCCACACGCCCTCAGTAAGCAGTAACATGG
AATTACGCTGCATAACAGCACATCGATCACCACAAAGCATTCCATATGCA
TGCCCTCACTGGTTATATCCTCCTCCTTTCCGAACACCGACATATCTCTC
CCGAACATAATAGACGAGTCCCTCCACAAATGCCGTCCTTGGTCCGAAGC
AGATTTCTTCCACCGCCTTCGCACATTCACACCACAACATTGGTTTGGCA
AGAGCTTGCTCGTGGCACCCCCACGATGCGCGGCGCAGGGATGGGTAAAC
TCGTCGACGGATACGTTGGAATGTCAAATGTACGTCATGGAATGGCTTCG
TCGGAAATACGTCGCCTCCCCTCTTTCTGTATATTTGGTGTTTATGTCAG
CTCATGATCATTTGTTTGATATCAGCATGAAGATAAAAACGAAGATGATT
TTTCTCATTCATTCCCTCCATCATCCTCTTCCTTTCGCTGTACAAAATGC
AGATGTCAAGCCACCCTCACCCTTCCCAGCAACTCGGAACCCGCTCCTGA
CATCCTCTCCTCCTCCCACTCCATCACCTGTCCCTGGGCCCACCAAGCTT
GCGAGCCCGATGTTTCACATTTCCCTCTTGTAACCGCTGAGTGTTTGCTT
ACTCATACGGCGCGTCGCATGGGCGGCATTCGTCCTCTTCTCCAAGCATA
CAAAGGAGATTTAACAGTTAAAGTACCTGAGGAATTCAACAAGCTGATGG
CTGGGTGTAAGATTCAGGGGGAAGGAGTGGGGGAGGGGAGAGACGGAGTG
GGTAGTTTGACCCTGGAGGCGCTGGCACGGCGGGTGGAGGAGTGTATTGA
GGATGATGCTGGTGGTGGTACAGCTGGTGCTGGAGCAAGGGAAGGAGGAG
GGGTTACGGTGGAGGAGGAGAAGAGGGAAGACGAGCAAGCATTGGAGTTG
AAGGGGAATGGGTTGATATTGGCTTTGCATGGATGGGAGGCAGGGCCTCC
ACCACGGCAGCCAGAGAGTGGAGGAAGAGGTGGAAGAGGTTGGGCGTTAA
TCTGTGGTATGTGCGGACGTCGGGTAGAAGTGGGGAGAGTGGTGGATCGA
AGGAGCAGCTTGGGGAGTGGTCGTATGATGGAAGGAGGGGGAGAAAAAGG
CGAGGATGTAGGAAGGGCCAAGGCGCGACGAGTTGGAGGGATGGCAGGAC
CCGCGGCGTTTGATGTCATGAACCAGCATCGATGGTGGTGTGCGTGGGTG
TCGCGGGGGCTGGATGAGAAGGGCCAGCCGGGATGGCGGCTGACGCTCAA
GACATTGGTGGGCCGCATGCGTCGGATGGTGGAGCTAGGGAAATTGATGG
AGGACGAGGGTGATAGTGGGGATAGGAGTTGGGGTGTGGGGTCGTCGTCG
TCGTCGTACGCACGAGCGAAGAGATTGCTTGATGGCATGTGATAATAAAT
AGAATTTGTCGGAAAGAAATTCAAGACAAAAGAGCTGCGTGAA
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Coding sequence (CDS) from alignment at chr4:1111116..1112958-

>NO04G04090.1 ID=NO04G04090.1|Name=NO04G04090.1|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at chr4:1111116..1112958- (Nannochloropsis oceanica)
ATGGCCACAACGCGGCGCGATCCCAGTCAGGAAGACGTGGATGAAGCATC
CTCGACTCTACGTGCCTGCGTCGATCGAGACCTTCTGGCCGAAATTTGCC
ATGGGGACAGCCTCGGAGCTGGTAACCACCGCGCATCCACGCACTCCTCG
TTGGTATCGACATCATCTCCGCCTTGGAAAGACGAGTCCCTCCACAAATG
CCGTCCTTGGTCCGAAGCAGATTTCTTCCACCGCCTTCGCACATTCACAC
CACAACATTGGTTTGGCAAGAGCTTGCTCGTGGCACCCCCACGATGCGCG
GCGCAGGGATGGGTAAACTCGTCGACGGATACGTTGGAATGTCAAATATG
TCAAGCCACCCTCACCCTTCCCAGCAACTCGGAACCCGCTCCTGACATCC
TCTCCTCCTCCCACTCCATCACCTGTCCCTGGGCCCACCAAGCTTGCGAG
CCCGATGTTTCACATTTCCCTCTTGTAACCGCTGAGTGTTTGCTTACTCA
TACGGCGCGTCGCATGGGCGGCATTCGTCCTCTTCTCCAAGCATACAAAG
GAGATTTAACAGTTAAAGTACCTGAGGAATTCAACAAGCTGATGGCTGGG
TGTAAGATTCAGGGGGAAGGAGTGGGGGAGGGGAGAGACGGAGTGGGTAG
TTTGACCCTGGAGGCGCTGGCACGGCGGGTGGAGGAGTGTATTGAGGATG
ATGCTGGTGGTGGTACAGCTGGTGCTGGAGCAAGGGAAGGAGGAGGGGTT
ACGGTGGAGGAGGAGAAGAGGGAAGACGAGCAAGCATTGGAGTTGAAGGG
GAATGGGTTGATATTGGCTTTGCATGGATGGGAGGCAGGGCCTCCACCAC
GGCAGCCAGAGAGTGGAGGAAGAGGTGGAAGAGGTTGGGCGTTAATCTGT
GGTATGTGCGGACGTCGGGTAGAAGTGGGGAGAGTGGTGGATCGAAGGAG
CAGCTTGGGGAGTGGTCGTATGATGGAAGGAGGGGGAGAAAAAGGCGAGG
ATGTAGGAAGGGCCAAGGCGCGACGAGTTGGAGGGATGGCAGGACCCGCG
GCGTTTGATGTCATGAACCAGCATCGATGGTGGTGTGCGTGGGTGTCGCG
GGGGCTGGATGAGAAGGGCCAGCCGGGATGGCGGCTGACGCTCAAGACAT
TGGTGGGCCGCATGCGTCGGATGGTGGAGCTAGGGAAATTGATGGAGGAC
GAGGGTGATAGTGGGGATAGGAGTTGGGGTGTGGGGTCGTCGTCGTCGTC
GTACGCACGAGCGAAGAGATTGCTTGATGGCATGTGA
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Synonyms
Publications