NO04G02430.1, NO04G02430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02430.1
Unique NameNO04G02430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length612
Alignment locationchr4:661663..662274 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:661663..662274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02430.1 vs.
Match: EWM28634.1 (sulfotransferase [Nannochloropsis gaditana])

HSP 1 Score: 239.2 bits (609), Expect = 1.100e-59
Identity = 116/174 (66.67%), Postives = 141/174 (81.03%), Query Frame = 0 
Query:   12 VQFLLPMSVAATLHNIYLSHGTKINQTRRSINLESERGIRPCPSYIIIGAQKCGTTSLYEYLCQHPLVLRANRRETHYLDRRWRREEGLTWREHRDTYHKFFNKTFPDENSSRIIGESSPSYMLYSDVVVPRVRELAPEAKMLVMLRCPVARAYSQYQMVIDPDGTPEQKKARG 186
            V  +L      ++    L  G K++QTRRSI+LESE G RPCPS++I+GAQK GTTSLYEYLCQHPLVLRA RRETHYLD RWRREE LTW +HR+TY +FF+    +EN S + GES+PSY+L+SD+V+PRVR+LAP AK+LV+LRCPVARAYSQYQMV DP+G+ EQKKARG
Sbjct:  270 VHLILDYLEKDSIERSILPPGAKLHQTRRSIDLESEHGSRPCPSFLILGAQKSGTTSLYEYLCQHPLVLRARRRETHYLDWRWRREEHLTWEDHRETYLRFFHAALLNENPSCMTGESTPSYLLHSDIVLPRVRKLAPTAKLLVILRCPVARAYSQYQMVTDPEGSVEQKKARG 443
The following BLAST results are available for this feature:
BLAST of NO04G02430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
50100150200250300350400450500550600Expect = 1.10e-59 / Id = 66.67SequenceEWM28634.1
Match NameE-valueIdentityDescription
EWM28634.11.100e-5966.67sulfotransferase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02430NO04G02430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02430.1NO04G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02430.1.cds1NO04G02430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02430.1 ID=NO04G02430.1|Name=NO04G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=612bp
ATGTTCTTGGTCCTCATAGGCGTCGCAGCCACTGTCCAATTTCTTCTCCC
CATGAGCGTCGCAGCCACTCTTCATAACATATATCTCTCGCATGGAACCA
AGATCAACCAAACCCGCCGCTCGATCAACCTGGAGTCGGAACGAGGAATA
CGTCCCTGCCCTAGTTACATCATTATAGGCGCACAGAAGTGTGGAACCAC
GTCCTTGTATGAATATCTGTGTCAGCATCCCTTGGTGTTGAGGGCAAACA
GGCGGGAGACTCATTACCTGGATCGGCGGTGGCGGAGGGAGGAAGGGTTG
ACTTGGCGGGAGCACCGGGACACGTATCACAAGTTTTTCAACAAGACGTT
TCCAGACGAGAACTCATCACGCATAATTGGGGAATCATCGCCGAGCTATA
TGTTGTATAGCGACGTGGTGGTGCCGAGGGTAAGGGAGCTGGCGCCCGAG
GCCAAGATGCTGGTGATGCTCCGTTGTCCTGTGGCGAGGGCCTACAGTCA
GTACCAAATGGTGATTGACCCGGATGGCACCCCAGAGCAGAAAAAAGCTA
GGGGACGCTCTGGAAAGGGAAGTCGTTCGAGGAAGTGGTCGAGAAGGAGT
TGGAGGAGCTAG
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protein sequence of NO04G02430.1

>NO04G02430.1-protein ID=NO04G02430.1-protein|Name=NO04G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MFLVLIGVAATVQFLLPMSVAATLHNIYLSHGTKINQTRRSINLESERGI
RPCPSYIIIGAQKCGTTSLYEYLCQHPLVLRANRRETHYLDRRWRREEGL
TWREHRDTYHKFFNKTFPDENSSRIIGESSPSYMLYSDVVVPRVRELAPE
AKMLVMLRCPVARAYSQYQMVIDPDGTPEQKKARGRSGKGSRSRKWSRRS
WRS*
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mRNA from alignment at chr4:661663..662274+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02430.1 ID=NO04G02430.1|Name=NO04G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=612bp|location=Sequence derived from alignment at chr4:661663..662274+ (Nannochloropsis oceanica)
ATGTTCTTGGTCCTCATAGGCGTCGCAGCCACTGTCCAATTTCTTCTCCC
CATGAGCGTCGCAGCCACTCTTCATAACATATATCTCTCGCATGGAACCA
AGATCAACCAAACCCGCCGCTCGATCAACCTGGAGTCGGAACGAGGAATA
CGTCCCTGCCCTAGTTACATCATTATAGGCGCACAGAAGTGTGGAACCAC
GTCCTTGTATGAATATCTGTGTCAGCATCCCTTGGTGTTGAGGGCAAACA
GGCGGGAGACTCATTACCTGGATCGGCGGTGGCGGAGGGAGGAAGGGTTG
ACTTGGCGGGAGCACCGGGACACGTATCACAAGTTTTTCAACAAGACGTT
TCCAGACGAGAACTCATCACGCATAATTGGGGAATCATCGCCGAGCTATA
TGTTGTATAGCGACGTGGTGGTGCCGAGGGTAAGGGAGCTGGCGCCCGAG
GCCAAGATGCTGGTGATGCTCCGTTGTCCTGTGGCGAGGGCCTACAGTCA
GTACCAAATGGTGATTGACCCGGATGGCACCCCAGAGCAGAAAAAAGCTA
GGGGACGCTCTGGAAAGGGAAGTCGTTCGAGGAAGTGGTCGAGAAGGAGT
TGGAGGAGCTAG
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Coding sequence (CDS) from alignment at chr4:661663..662274+

>NO04G02430.1 ID=NO04G02430.1|Name=NO04G02430.1|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at chr4:661663..662274+ (Nannochloropsis oceanica)
ATGTTCTTGGTCCTCATAGGCGTCGCAGCCACTGTCCAATTTCTTCTCCC
CATGAGCGTCGCAGCCACTCTTCATAACATATATCTCTCGCATGGAACCA
AGATCAACCAAACCCGCCGCTCGATCAACCTGGAGTCGGAACGAGGAATA
CGTCCCTGCCCTAGTTACATCATTATAGGCGCACAGAAGTGTGGAACCAC
GTCCTTGTATGAATATCTGTGTCAGCATCCCTTGGTGTTGAGGGCAAACA
GGCGGGAGACTCATTACCTGGATCGGCGGTGGCGGAGGGAGGAAGGGTTG
ACTTGGCGGGAGCACCGGGACACGTATCACAAGTTTTTCAACAAGACGTT
TCCAGACGAGAACTCATCACGCATAATTGGGGAATCATCGCCGAGCTATA
TGTTGTATAGCGACGTGGTGGTGCCGAGGGTAAGGGAGCTGGCGCCCGAG
GCCAAGATGCTGGTGATGCTCCGTTGTCCTGTGGCGAGGGCCTACAGTCA
GTACCAAATGGTGATTGACCCGGATGGCACCCCAGAGCAGAAAAAAGCTA
GGGGACGCTCTGGAAAGGGAAGTCGTTCGAGGAAGTGGTCGAGAAGGAGT
TGGAGGAGCTAG
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Synonyms
Publications