NO04G02040.1, NO04G02040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02040.1
Unique NameNO04G02040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1680
Alignment locationchr4:592089..593886 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:592089..593886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02040.1 vs.
Match: XP_004336833.1 (4alpha-methyl-sterol C4-methyl-oxidase [Acanthamoeba castellanii str. Neff]; ELR14820.1 4alpha-methyl-sterol C4-methyl-oxidase [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 164.1 bits (414), Expect = 7.600e-37
Identity = 92/251 (36.65%), Postives = 136/251 (54.18%), Query Frame = 0 
Query:   49 WSDATIFAVGTYAIHQIIAATFSLFYCLLHSHGLLLRYRIQ-----TAEPFDKALFQLATRHLIWRALVKEFPVMLIMYSGFHYSGTKVRAPLPSIT----RILGDWMLCWLWTETTFYWTHRLFHHRWFYKRFHKQHHTFKTSVALNTEYAHPLEHLISNVLTTFGGPLLLGSHVLVFWSYFAFRLWETFDGHSGYTIPI-LSPFSVMPWWTGPQMHDFHHSHNIGAFGTMTCFWDWVCGTDKAYRMFAA 290
            +S+ T++  G  A+H +    F++    +H + +L RY+IQ     T E   K L  ++ +H +         V+ +++      G      LPSIT    R++   ++  L  +T FYWTHRL H  + YKR HKQHH F T V + +EYAHP E  ++ V     GPL++GSH+   + +   RLWET D HSGY +P  LSPFS+   +     HD+HHS N G +G+    WDW+CGTD  Y+ + A
Sbjct:    9 YSERTLWMAGA-ALHTVTFVAFNVGLYFMHRYQILARYKIQPLKYPTEELIRKGLVDVSIKHALAPF------VLYLLWPLAERCGVHATPELPSITEVGTRVMVHLLVHILVQDTIFYWTHRLLHQPFLYKRIHKQHHQFYTPVGIASEYAHPAEDFLTQV-AFIAGPLIMGSHIFTLYLWLLLRLWETVDAHSGYALPFPLSPFSL---FGVADQHDYHHSQNKGCYGSFFGLWDWICGTDADYKKWKA 248
The following BLAST results are available for this feature:
BLAST of NO04G02040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_004336833.17.600e-3736.654alpha-methyl-sterol C4-methyl-oxidase [Acanthamoe... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02040NO04G02040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02040.1NO04G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02040.1.cds1NO04G02040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02040.1.cds2NO04G02040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02040.1 ID=NO04G02040.1|Name=NO04G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1680bp
GTCCTCCTCCGTGTCCTGTGGCTGCACAATGTGGAAGTGTAAGAGGGCGC
GAGGGTCAGGGTGAGGTACACACGGCGAAGAAGGAAAGTGCGTCGAGGTT
CGCCATATAACGCATCGCTACTTTCATCGACCCCCCAAAAAACGTGCCCG
CCTCCACTTGCGTGCAGGACACAATCTTGCACCAACAAGAACATGCTCGG
CAAGACAAGCTCCTCGAGGGTAGTAGATTTCATGTGGCTCTTGTGCCCCC
AAGCAGGGCAATCAAGGTATTACGTCCCAAGTCCAAGCCCGCCAGTCTGC
GGCCTCTCGTGGCCTCTGAAGTCTGCATAATCTGAACACTTTCTCACATC
ATTGCTCCCTTTGCATTCTGACATCTAAAAAAGTAAAATTATAAAGCTGG
AACAAGCAAGCCTAGCAGATGATGTTCAACAAGACAGGGATTTGCAATGG
TAGCACTAGTGCGGCTGGTGGAGGATGGGGATGGTATCTGGTGGAGGATA
TGGCCAGACCTTACGTGGCATGGGTGGATACGCATTGGCTGACCTTTACG
GAAATGATAACATGGTCCGATGCCACAATTTTTGCGGTGGGTACCTACGC
CATCCATCAAATTATTGCCGCCACCTTTTCCCTCTTCTACTGTCTCCTGC
ATTCCCACGGCTTGCTCCTGCGATACCGCATCCAGACCGCCGAACCATTT
GACAAAGCGCTTTTTCAATTGGCTACACGTCATTTGATTTGGCGCGCTCT
CGTTAAAGAATTTCCGGTGATGCTTATCATGTACTCTGGCTTCCACTATT
CTGGAACCAAGGTCCGCGCGCCCTTGCCTTCCATCACACGCATTCTCGGA
GACTGGATGTTGTGTTGGCTGTGGACAGAAACAACGTTTTACTGGACACA
TAGATTGTTCCACCACCGTTGGTTCTACAAGCGCTTCCATAAGCAGCATC
ACACATTCAAGACCAGTGTTGCTTTAAACACAGAATATGCCCACCCCCTC
GAACATCTCATCAGCAACGTCCTCACCACCTTCGGAGGCCCCCTTCTCCT
GGGTTCGCATGTACTGGTGTTTTGGTCTTACTTCGCTTTTCGCCTCTGGG
AGACGTTTGATGGCCATTCAGGATATACCATCCCGATCCTTTCCCCCTTC
TCTGTGATGCCTTGGTGGACGGGCCCGCAGATGCATGATTTCCACCATTC
GCACAATATTGGTGCATTTGGCACCATGACGTGTTTTTGGGACTGGGTGT
GTGGAACGGATAAGGCATATCGGATGTTTGCCGCGAAGGAGAAGGAGAGG
CAAGGGCGCAAAGAGAAAGAGGGCAGAGCAAAAAAAGAAGTAAAGGAAGA
GGAGGAATCGAAAATGAAAAAGAAGATGTGTGAAGAAAGTGTGTGGAAGA
AAACCACGAAAATGTATACACAGTAGATTAAGAAAGGAATAAGAGAGAAA
ACGATCATGTTTTAACGCATGCACTAGTATAGAGTAAAAGAGACGAGCTG
CCCTCTTCTGTGGATAGTTTGACGCTTCGAGAGAACAGGTAGAGGCCGTG
AAATGAGTTGGCAGTGAAATTTGAGGGCTTGTATTGGTGAAAAAATGTAA
ACAGCTGTGCGAAGAGGAGGGGTGGTTGCTCCCGAAAATTGCCTTAAACG
TACTTTGCATAAAGAAACAATATAAAAGGA
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protein sequence of NO04G02040.1

>NO04G02040.1-protein ID=NO04G02040.1-protein|Name=NO04G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MMFNKTGICNGSTSAAGGGWGWYLVEDMARPYVAWVDTHWLTFTEMITWS
DATIFAVGTYAIHQIIAATFSLFYCLLHSHGLLLRYRIQTAEPFDKALFQ
LATRHLIWRALVKEFPVMLIMYSGFHYSGTKVRAPLPSITRILGDWMLCW
LWTETTFYWTHRLFHHRWFYKRFHKQHHTFKTSVALNTEYAHPLEHLISN
VLTTFGGPLLLGSHVLVFWSYFAFRLWETFDGHSGYTIPILSPFSVMPWW
TGPQMHDFHHSHNIGAFGTMTCFWDWVCGTDKAYRMFAAKEKERQGRKEK
EGRAKKEVKEEEESKMKKKMCEESVWKKTTKMYTQ*
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mRNA from alignment at chr4:592089..593886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02040.1 ID=NO04G02040.1|Name=NO04G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1798bp|location=Sequence derived from alignment at chr4:592089..593886- (Nannochloropsis oceanica)
GTCCTCCTCCGTGTCCTGTGGCTGCACAATGTGGAAGTGTAAGAGGGCGC
GAGGGTCAGGGTGAGGTACACACGGCGAAGAAGGAAAGTGCGTCGAGGTT
CGCCATATAACGCATCGCTACTTTCATCGACCCCCCAAAAAACGTGCCCG
CCTCCACTTGCGTGCAGGACACAATCTTGCACCAACAAGAACATGCTCGG
CAAGACAAGCTCCTCGAGGGTAGTAGATTTCATGTGGCTCTTGTGCCCCC
AAGCAGGGCAATCAAGGTATTACGTCCCAAGTCCAAGCCCGCCAGTCTGC
GGCCTCTCGTGGCCTCTGAAGTCTGCATAATCTGAACACTTTCTCACATC
ATTGCTCCCTTTGCATTCTGACATCTAAAAAAGTAAAATTATAAAGCTGG
AACAAGCAAGCCTAGCAGATGATGTTCAACAAGACAGGGATTTGCAATGG
TAGCACTAGTGCGGCTGGTGGAGGATGGGGATGGTATCTGGTGGAGGATA
TGGCCAGACCTTACGTGGCATGGGTGGATACGCATTGGCTGACCTTTACG
GAAATGATAACATGGTCCGATGCCACAATTTTTGCGGTGGGTACCTACGC
CATCCATCAAATTATTGCCGCCACCTTTTCCCTCTTCTACTGTCTCCTGC
ATTCCCACGGCTTGCTCCTGCGATACCGCATCCAGACCGCCGAACCATTT
GACAAAGCGCTTTTTCAATTGGCTACACGTCATTTGATTTGGCGCGCTCT
CGTTAAAGAATTTCCGGTGATGCTTATCATGTACTCTGGCTTCCACTATT
CTGGAACCAAGGTCCGCGCGCCCTTGCCTTCCATCACACGCATTCTCGGA
GACTGGATGTTGTGTTGGCTGTGGACAGAAACAACGTTTTACTGGACACA
TAGATGTATGTAGGAAAGGGAGGGTAAGAGGCAGATGAGGGATGGGTCTT
CCTCATTTTCATTTTCGCGCTTTCATTAAATTTCTCAATCCATCCAATTC
CCTACCTCTCTCTTCCTCGTTAGTGTTCCACCACCGTTGGTTCTACAAGC
GCTTCCATAAGCAGCATCACACATTCAAGACCAGTGTTGCTTTAAACACA
GAATATGCCCACCCCCTCGAACATCTCATCAGCAACGTCCTCACCACCTT
CGGAGGCCCCCTTCTCCTGGGTTCGCATGTACTGGTGTTTTGGTCTTACT
TCGCTTTTCGCCTCTGGGAGACGTTTGATGGCCATTCAGGATATACCATC
CCGATCCTTTCCCCCTTCTCTGTGATGCCTTGGTGGACGGGCCCGCAGAT
GCATGATTTCCACCATTCGCACAATATTGGTGCATTTGGCACCATGACGT
GTTTTTGGGACTGGGTGTGTGGAACGGATAAGGCATATCGGATGTTTGCC
GCGAAGGAGAAGGAGAGGCAAGGGCGCAAAGAGAAAGAGGGCAGAGCAAA
AAAAGAAGTAAAGGAAGAGGAGGAATCGAAAATGAAAAAGAAGATGTGTG
AAGAAAGTGTGTGGAAGAAAACCACGAAAATGTATACACAGTAGATTAAG
AAAGGAATAAGAGAGAAAACGATCATGTTTTAACGCATGCACTAGTATAG
AGTAAAAGAGACGAGCTGCCCTCTTCTGTGGATAGTTTGACGCTTCGAGA
GAACAGGTAGAGGCCGTGAAATGAGTTGGCAGTGAAATTTGAGGGCTTGT
ATTGGTGAAAAAATGTAAACAGCTGTGCGAAGAGGAGGGGTGGTTGCTCC
CGAAAATTGCCTTAAACGTACTTTGCATAAAGAAACAATATAAAAGGA
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Coding sequence (CDS) from alignment at chr4:592089..593886-

>NO04G02040.1 ID=NO04G02040.1|Name=NO04G02040.1|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at chr4:592089..593886- (Nannochloropsis oceanica)
ATGATGTTCAACAAGACAGGGATTTGCAATGGTAGCACTAGTGCGGCTGG
TGGAGGATGGGGATGGTATCTGGTGGAGGATATGGCCAGACCTTACGTGG
CATGGGTGGATACGCATTGGCTGACCTTTACGGAAATGATAACATGGTCC
GATGCCACAATTTTTGCGGTGGGTACCTACGCCATCCATCAAATTATTGC
CGCCACCTTTTCCCTCTTCTACTGTCTCCTGCATTCCCACGGCTTGCTCC
TGCGATACCGCATCCAGACCGCCGAACCATTTGACAAAGCGCTTTTTCAA
TTGGCTACACGTCATTTGATTTGGCGCGCTCTCGTTAAAGAATTTCCGGT
GATGCTTATCATGTACTCTGGCTTCCACTATTCTGGAACCAAGGTCCGCG
CGCCCTTGCCTTCCATCACACGCATTCTCGGAGACTGGATGTTGTGTTGG
CTGTGGACAGAAACAACGTTTTACTGGACACATAGATTGTTCCACCACCG
TTGGTTCTACAAGCGCTTCCATAAGCAGCATCACACATTCAAGACCAGTG
TTGCTTTAAACACAGAATATGCCCACCCCCTCGAACATCTCATCAGCAAC
GTCCTCACCACCTTCGGAGGCCCCCTTCTCCTGGGTTCGCATGTACTGGT
GTTTTGGTCTTACTTCGCTTTTCGCCTCTGGGAGACGTTTGATGGCCATT
CAGGATATACCATCCCGATCCTTTCCCCCTTCTCTGTGATGCCTTGGTGG
ACGGGCCCGCAGATGCATGATTTCCACCATTCGCACAATATTGGTGCATT
TGGCACCATGACGTGTTTTTGGGACTGGGTGTGTGGAACGGATAAGGCAT
ATCGGATGTTTGCCGCGAAGGAGAAGGAGAGGCAAGGGCGCAAAGAGAAA
GAGGGCAGAGCAAAAAAAGAAGTAAAGGAAGAGGAGGAATCGAAAATGAA
AAAGAAGATGTGTGAAGAAAGTGTGTGGAAGAAAACCACGAAAATGTATA
CACAGTAG
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Synonyms
Publications