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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:545270..547793 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G01870.1 vs.
Match: EWM28603.1 (phospholipid n-methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 307.0 bits (785), Expect = 4.700e-80 Identity = 147/185 (79.46%), Postives = 163/185 (88.11%), Query Frame = 0
Query: 31 MAIAPAFPFDEDLGLLFLALSTPHILYFFTWTCTGSFTRVAKTVGVEAFTLFYKLSVLIKFVQLGALIMWGMKNLPTFKLESLTPLQAVVGTIMFAAGQALNMGVYNALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQYVGCVLCIWGVVAVLLSQANVDAGLLTIATVWSGFYGITGLIEHYF 216
M I+ AFP +E LGLL LALSTPH+LYFFTWTCTG+FTR+AK VGVEAF LFYKLSVL+KFVQLGAL+ WGM+ +P K+ S+ PLQ VVG MF AGQ LNMGVY ALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQYVGCVLCIWGVVAVLL+QAN+DAGLLTIA+ WS FY +TGLIEH+F
Sbjct: 11 MGISLAFPVNEGLGLLLLALSTPHLLYFFTWTCTGAFTRIAKAVGVEAFALFYKLSVLLKFVQLGALVTWGMQYMPPMKVASIPPLQVVVGLGMFGAGQILNMGVYTALGKEGVYYGVRLGKPIAWYEGFPFTVVPHPQYVGCVLCIWGVVAVLLNQANIDAGLLTIASAWSTFYCVTGLIEHHF 195
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G01870.1 ID=NO04G01870.1|Name=NO04G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2192bp
ATTGGTTGCTTGTTAAATGTCTTGTGGTAATTTGTTGTTTACATTATTTG
CTAGTTCATAACGCACAAGTCAGATGACGTCCTAACAATCTCTCGTCTCT
CCTCACATCTTTCTCATTTACAACCATTTACTCCCTTCAAACGCCGATGA
TGATGTCCCGCTCCCTCCTCCTCCTTTCCCATCCCTCGCTCCTTCCTATC
CATCCCGCACTGCTCCAACAACTGCCTTGCTGTATTGTTAATCACTCGAA
ATCTTGACGGGCCCAGTAGCACACCCCCCCACCACCGACTCACCACAATC
ACCACATTGTTCACACCCATCACAGCTATCAATTCAGCAAGTTTCCCCCC
TGCAGCATTTTCGCCGTCGTCATCATTATCATTCACCTGAGCTTGTTTCT
TTACATCGAAAACACGAAACGCGTACATATTATGCGATGCCCGTTGGATT
TTCCGATCGAGGAGGAGGCATTCAATAACGGTGCGGGCGTCTTTTTCGGT
GGTAATGCGTGCCAAGTGGGCCTGGAACGTGCTTTTTCGTTCAGTGAAGG
GCACGCCGTGTATAAGCTCTAAACCGTGTCGTCTTGCTGCTGCCTGCGGG
GTGAGAACACTACCGTTGTTGATTATATGCTCACAGTCATGGCTGTCATG
GTTATCTCCTTTCTCCCCGCTTCCCTCCTCCGCGGCGGTGCTGTGCGTGA
TGGGCAGCAAATGCAGCTCCTCCTTTAGCCATTCACACCACGGGAACAGG
ATCACTTCTCCCGCTTGGTTATGAAAAATATCTCGCAATCCATCGTAAAT
GTGCGCCTGATCGTGCATGGGATTTGACCAATTAATCCCTCGCAGCTCAA
AGCACGGCATCTCCGCACCAGGGGAAGGATACGAAGGAGGCAAGTAGATC
TTGAGGACCACCGTCCTGGAATTCTCGTCATTCTCGGCCTTGCCCAGTTT
GATCTCCACCAAATATTCGTCCCCTTGTTGCATAACCTTGACCAAATCCT
CGGTGTAGATGAGCAGCAGGCTTTCGACTTCCTCGTTGCGTCGTGCCGTA
ATGCTTTCCTGTTCCTGCGGCTCCTCCATCTTTTTGCATGGCCTTTCGGT
CGACCTTGTTGTTACCGTGTCTGTGATGTGGATGCTTTGGAGTGATTTTA
GGCAGAATAGTTTGTGCTGGAAATGGGGGGCAGGCAGAGGCGGGGAGGTA
CTTATGCAGATCGCCGACCGAGGAAGAACTTCGAAGCCAGAAAGCGCACG
GCCCAGACGTTGCGGATGACCCAAACCTCACACAGGACGCATCAGGAGGT
CCCGCAGCATCGAGAAGCAGCACCAGTTGATGCTGCAGCAGTGGCCGCCA
CTGCTATGGCTTGTCTTGTCCCTCTGTTCTCAATACAGACACTACCCGCA
TCGTCGCAGGCAAGCTCAGATGGCGATCGCACCAGCCTTCCCGTTCGATG
AGGACCTTGGCCTCCTCTTCCTGGCCTTGTCCACGCCCCATATTCTTTAC
TTCTTTACGTGGACCTGTACAGGCTCCTTTACCCGCGTCGCCAAGACCGT
AGGCGTAGAGGCCTTTACACTCTTCTACAAGCTGTCGGTGTTGATCAAGT
TTGTGCAGTTGGGGGCCCTCATCATGTGGGGCATGAAGAATCTCCCAACC
TTCAAGCTGGAAAGCCTCACCCCCTTACAAGCGGTCGTGGGTACCATCAT
GTTCGCTGCGGGCCAAGCTTTGAACATGGGGGTGTACAACGCCTTGGGGA
AAGAAGGAGTCTACTACGGAGTGCGATTGGGTAAGCCTATCGCGTGGTAC
GAGGGTTTTCCCTTTACTGTTGTCCCTCACCCGCAGTATGTGGGCTGCGT
GCTTTGCATCTGGGGAGTGGTGGCCGTGTTACTGAGCCAGGCAAATGTGG
ATGCGGGCTTATTGACGATTGCAACTGTCTGGAGCGGATTTTATGGCATC
ACTGGTCTGATTGAGCATTATTTTTAGAGCTAGAAGAGTGCTGAGGAAAG
CAAAGAACAAAAGAGACAAGCAAATTGGGGAGAGACTGGAAAAATAGCGC
ACGAATTGATAGTGGGGACGATGGGAGGACTGAAGAAAAAGGATGTGTGA
CTAGAATACATCAAGATGAGAGTAAAATAGTACCGGCAGCAACAGCGCCA
CTGAGGGACAAACTGAAGAATGAACCTTTTATAAGTCGCGCG back to topprotein sequence of NO04G01870.1 >NO04G01870.1-protein ID=NO04G01870.1-protein|Name=NO04G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MLQQWPPLLWLVLSLCSQYRHYPHRRRQAQMAIAPAFPFDEDLGLLFLAL
STPHILYFFTWTCTGSFTRVAKTVGVEAFTLFYKLSVLIKFVQLGALIMW
GMKNLPTFKLESLTPLQAVVGTIMFAAGQALNMGVYNALGKEGVYYGVRL
GKPIAWYEGFPFTVVPHPQYVGCVLCIWGVVAVLLSQANVDAGLLTIATV
WSGFYGITGLIEHYF* back to topmRNA from alignment at chr4:545270..547793- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G01870.1 ID=NO04G01870.1|Name=NO04G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2524bp|location=Sequence derived from alignment at chr4:545270..547793- (Nannochloropsis oceanica)
ATTGGTTGCTTGTTAAATGTCTTGTGGTAATTTGTTGTTTACATTATTTG
CTAGTTCATAACGCACAAGTCAGATGACGTCCTAACAATCTCTCGTCTCT
CCTCACATCTTTCTCATTTACAACCATTTACTCCCTTCAAACGCCGATGA
TGATGTCCCGCTCCCTCCTCCTCCTTTCCCATCCCTCGCTCCTTCCTATC
CATCCCGCACTGCTCCAACAACTGCCTTGCTGTATTGTTAATCACTCGAA
ATCTTGACGGGCCCAGTAGCACACCCCCCCACCACCGACTCACCACAATC
ACCACATTGTTCACACCCATCACAGCTATCAATTCAGCAAGTTTCCCCCC
TGCAGCATTTTCGCCGTCGTCATCATTATCATTCACCTGAGCTTGTTTCT
TTACATCGAAAACACGAAACGCGTACATATTATGCGATGCCCGTTGGATT
TTCCGATCGAGGAGGAGGCATTCAATAACGGTGCGGGCGTCTTTTTCGGT
GGTAATGCGTGCCAAGTGGGCCTGGAACGTGCTTTTTCGTTCAGTGAAGG
GCACGCCGTGTATAAGCTCTAAACCGTGTCGTCTTGCTGCTGCCTGCGGG
GTGAGAACACTACCGTTGTTGATTATATGCTCACAGTCATGGCTGTCATG
GTTATCTCCTTTCTCCCCGCTTCCCTCCTCCGCGGCGGTGCTGTGCGTGA
TGGGCAGCAAATGCAGCTCCTCCTTTAGCCATTCACACCACGGGAACAGG
ATCACTTCTCCCGCTTGGTTATGAAAAATATCTCGCAATCCATCGTAAAT
GTGCGCCTGATCGTGCATGGGATTTGACCAATTAATCCCTCGCAGCTCAA
AGCACGGCATCTCCGCACCAGGGGAAGGATACGAAGGAGGCAAGTAGATC
TTGAGGACCACCGTCCTGGAATTCTCGTCATTCTCGGCCTTGCCCAGTTT
GATCTCCACCAAATATTCGTCCCCTTGTTGCATAACCTTGACCAAATCCT
CGGTGTAGATGAGCAGCAGGCTTTCGACTTCCTCGTTGCGTCGTGCCGTA
ATGCTTTCCTGTTCCTGCGGCTCCTCCATCTTTTTGCATGGCCTTTCGGT
CGACCTTGTTGTTACCGTGTCTGTGATGTGGATGCTTTGGAGTGATTTTA
GGCAGAATAGTTTGTGCTGGAAATGGGGGGCAGGCAGAGGCGGGGAGGTA
CTTATGCAGATCGCCGACCGAGGAAGAACTTCGAAGCCAGAAAGCGCACG
GCCCAGACGTTGCGGATGACCCAAACCTCACACAGGACGCATCAGGAGGT
CCCGCAGCATCGAGAAGCAGCACCAGTTGATGCTGCAGCAGTGGCCGCCA
CTGCTATGGCTTGTCTTGTCCCTCTGTTCTCAATACAGACACTACCCGCA
TCGTCGCAGGCAAGCTCAGATGGCGATCGCACCAGCCTTCCCGTTCGATG
AGGACCTTGGCCTCCTCTTCCTGGCCTTGTCCACGCCCCATATTCTTTAC
TTCTTTACGTGGACCTGTACAGGCTCCTTTACCCGCGTCGCCAAGACCGT
AGGCGTAGAGGCCTTTACACTCTTCTACAAGGTGCGATTAGAGGGAGGGG
AGGAGGGGGAATGAAGGGGGTGGAGGGGAGGTATATGCCGTGCTTTTGGT
CAGATGTCAGGCTTTCTCTCTTATTCGGCATATTTCTCCCTATCTTTCCC
TCTCTACATAGCTGTCGGTGTTGATCAAGTTTGTGCAGTTGGGGGCCCTC
ATCATGTGGGGCATGAAGGTGCGGAGACGGGACATGCAGGGGGAGAGTGG
GGAATGAGATAAGCAGAGAGAGGGTGGGAGGTGAATAAAATTGACGCAAA
ACTCTGTCGAATCTCTTTAAGCCACTTTATAACGCCTCGCCCTTCTTGTT
TGTACATCCTCTCGAGCAAGACGGGCAATCAAACATTCGCGTAGCTCATT
CCCCCACCACCAACCCTCAGAATCTCCCAACCTTCAAGCTGGAAAGCCTC
ACCCCCTTACAAGCGGTCGTGGGTACCATCATGTTCGCTGCGGGCCAAGC
TTTGAACATGGGGGTGTACAACGCCTTGGGGAAAGAAGGAGTCTACTACG
GAGTGCGATTGGGTAAGCCTATCGCGTGGTACGAGGGTTTTCCCTTTACT
GTTGTCCCTCACCCGCAGTATGTGGGCTGCGTGCTTTGCATCTGGGGAGT
GGTGGCCGTGTTACTGAGCCAGGCAAATGTGGATGCGGGCTTATTGACGA
TTGCAACTGTCTGGAGCGGATTTTATGGCATCACTGGTCTGATTGAGCAT
TATTTTTAGAGCTAGAAGAGTGCTGAGGAAAGCAAAGAACAAAAGAGACA
AGCAAATTGGGGAGAGACTGGAAAAATAGCGCACGAATTGATAGTGGGGA
CGATGGGAGGACTGAAGAAAAAGGATGTGTGACTAGAATACATCAAGATG
AGAGTAAAATAGTACCGGCAGCAACAGCGCCACTGAGGGACAAACTGAAG
AATGAACCTTTTATAAGTCGCGCG back to topCoding sequence (CDS) from alignment at chr4:545270..547793- >NO04G01870.1 ID=NO04G01870.1|Name=NO04G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at chr4:545270..547793- (Nannochloropsis oceanica)
ATGCTGCAGCAGTGGCCGCCACTGCTATGGCTTGTCTTGTCCCTCTGTTC
TCAATACAGACACTACCCGCATCGTCGCAGGCAAGCTCAGATGGCGATCG
CACCAGCCTTCCCGTTCGATGAGGACCTTGGCCTCCTCTTCCTGGCCTTG
TCCACGCCCCATATTCTTTACTTCTTTACGTGGACCTGTACAGGCTCCTT
TACCCGCGTCGCCAAGACCGTAGGCGTAGAGGCCTTTACACTCTTCTACA
AGCTGTCGGTGTTGATCAAGTTTGTGCAGTTGGGGGCCCTCATCATGTGG
GGCATGAAGAATCTCCCAACCTTCAAGCTGGAAAGCCTCACCCCCTTACA
AGCGGTCGTGGGTACCATCATGTTCGCTGCGGGCCAAGCTTTGAACATGG
GGGTGTACAACGCCTTGGGGAAAGAAGGAGTCTACTACGGAGTGCGATTG
GGTAAGCCTATCGCGTGGTACGAGGGTTTTCCCTTTACTGTTGTCCCTCA
CCCGCAGTATGTGGGCTGCGTGCTTTGCATCTGGGGAGTGGTGGCCGTGT
TACTGAGCCAGGCAAATGTGGATGCGGGCTTATTGACGATTGCAACTGTC
TGGAGCGGATTTTATGGCATCACTGGTCTGATTGAGCATTATTTTTAG back to top
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