NO04G01440.1, NO04G01440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01440.1
Unique NameNO04G01440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length931
Alignment locationchr4:449845..450775 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:449845..450775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01440.1 vs.
Match: EWM28620.1 (histone-like transcription factor family protein [Nannochloropsis gaditana])

HSP 1 Score: 163.3 bits (412), Expect = 6.700e-37
Identity = 104/188 (55.32%), Postives = 128/188 (68.09%), Query Frame = 0 
Query:    1 MSSSTPTEEEVPSAPAETAPAQLPA------PDPPA----ATTDAVPDAAIEDTKR-----PAAEAMTEGEGAVASVAAPIPSKKPRNAPAPPISATSEYVTEETTFLIPKASIKRIMKLDPDSKQLSQDAIMLMAKATELFVDKLAKASHAMAVSNKRKTIKYEDIADARLSVKSLEFLDGVVPQIP 174
            MS S    +   SA +  +P+Q P+      P  PA    +T         E+ KR     P    +     ++ +  AP+ SKK RNAP PP+S ++ YVTE+TT  IP+ASIKRIMKLDPD+KQLSQDAIM+MAKATELF+DKLAKASH+MAV+NKRKTIKYEDIADAR S K++EFLDGVVPQIP
Sbjct:   12 MSRSPEVLQTSNSALSYASPSQAPSGAAIMMPTAPALPGRSTNTPNTPTGTEERKRDTPEGPKPSPLAGTPASMKAEEAPVSSKKARNAPIPPLSTSNAYVTEDTTLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199
The following BLAST results are available for this feature:
BLAST of NO04G01440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28620.16.700e-3755.32histone-like transcription factor family protein [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01440NO04G01440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01440.1NO04G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01440.1.cds1NO04G01440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01440.1 ID=NO04G01440.1|Name=NO04G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=931bp
GAGGGGAGGGTGGGGGAGGTCGATGGGAAAAGTGGAAATGCGTGGAAGCC
TTCCGTGGCAAAACCATGGCCACTGCTTACTCAAACACGACGTAATGTTG
ATCTTTAAGTGGTGCTTGTCGTGTGGCAGGATAAAAACGTAAAAAAGAGG
TTACAAGGGCCACCACGTCGAGCACCTTCTTGCCTACTTGTCGCTTTTCA
CTGAGGTCCGATGCGCGGTGACGGTTTTCCACAATACCCCTGTCCCTAGC
CTTCCACACACTCATTACAAAGCCTCCCAAACCACAACACCACGACAGCA
GGACCACCATGTCCTCTTCGACGCCCACCGAAGAGGAAGTGCCGTCGGCC
CCCGCAGAGACCGCGCCGGCGCAACTACCCGCGCCAGACCCTCCTGCAGC
GACAACAGACGCAGTGCCCGACGCTGCTATTGAGGACACCAAGCGCCCCG
CAGCAGAGGCAATGACAGAGGGAGAGGGAGCAGTGGCATCAGTGGCAGCG
CCCATACCAAGTAAAAAGCCTCGGAACGCTCCTGCCCCGCCAATCTCCGC
GACTTCAGAGTATGTGACCGAGGAGACAACTTTCCTGATTCCTAAGGCTT
CGATCAAGCGCATCATGAAACTGGACCCGGACTCGAAGCAATTATCCCAG
GACGCCATCATGCTAATGGCCAAGGCCACGGAGTTGTTTGTGGATAAGCT
TGCCAAGGCCTCGCATGCAATGGCGGTATCGAATAAACGGAAGACGATAA
AGTATGAGGACATTGCTGATGCCCGCCTTTCGGTTAAGTCTCTGGAGTTT
TTGGATGGAGTGGTGCCGCAGATTCCCTGAAGAGAAGTAAAGTGAAAGAG
AATGAGACAAAGAATACGTGGATCATATTTATCAACGTGCATATCTGTAA
TAAAAGAAAAAAGGAAGACATTAAAGATTTG
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protein sequence of NO04G01440.1

>NO04G01440.1-protein ID=NO04G01440.1-protein|Name=NO04G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MSSSTPTEEEVPSAPAETAPAQLPAPDPPAATTDAVPDAAIEDTKRPAAE
AMTEGEGAVASVAAPIPSKKPRNAPAPPISATSEYVTEETTFLIPKASIK
RIMKLDPDSKQLSQDAIMLMAKATELFVDKLAKASHAMAVSNKRKTIKYE
DIADARLSVKSLEFLDGVVPQIP*
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mRNA from alignment at chr4:449845..450775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01440.1 ID=NO04G01440.1|Name=NO04G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=931bp|location=Sequence derived from alignment at chr4:449845..450775- (Nannochloropsis oceanica)
GAGGGGAGGGTGGGGGAGGTCGATGGGAAAAGTGGAAATGCGTGGAAGCC
TTCCGTGGCAAAACCATGGCCACTGCTTACTCAAACACGACGTAATGTTG
ATCTTTAAGTGGTGCTTGTCGTGTGGCAGGATAAAAACGTAAAAAAGAGG
TTACAAGGGCCACCACGTCGAGCACCTTCTTGCCTACTTGTCGCTTTTCA
CTGAGGTCCGATGCGCGGTGACGGTTTTCCACAATACCCCTGTCCCTAGC
CTTCCACACACTCATTACAAAGCCTCCCAAACCACAACACCACGACAGCA
GGACCACCATGTCCTCTTCGACGCCCACCGAAGAGGAAGTGCCGTCGGCC
CCCGCAGAGACCGCGCCGGCGCAACTACCCGCGCCAGACCCTCCTGCAGC
GACAACAGACGCAGTGCCCGACGCTGCTATTGAGGACACCAAGCGCCCCG
CAGCAGAGGCAATGACAGAGGGAGAGGGAGCAGTGGCATCAGTGGCAGCG
CCCATACCAAGTAAAAAGCCTCGGAACGCTCCTGCCCCGCCAATCTCCGC
GACTTCAGAGTATGTGACCGAGGAGACAACTTTCCTGATTCCTAAGGCTT
CGATCAAGCGCATCATGAAACTGGACCCGGACTCGAAGCAATTATCCCAG
GACGCCATCATGCTAATGGCCAAGGCCACGGAGTTGTTTGTGGATAAGCT
TGCCAAGGCCTCGCATGCAATGGCGGTATCGAATAAACGGAAGACGATAA
AGTATGAGGACATTGCTGATGCCCGCCTTTCGGTTAAGTCTCTGGAGTTT
TTGGATGGAGTGGTGCCGCAGATTCCCTGAAGAGAAGTAAAGTGAAAGAG
AATGAGACAAAGAATACGTGGATCATATTTATCAACGTGCATATCTGTAA
TAAAAGAAAAAAGGAAGACATTAAAGATTTG
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Coding sequence (CDS) from alignment at chr4:449845..450775-

>NO04G01440.1 ID=NO04G01440.1|Name=NO04G01440.1|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at chr4:449845..450775- (Nannochloropsis oceanica)
ATGTCCTCTTCGACGCCCACCGAAGAGGAAGTGCCGTCGGCCCCCGCAGA
GACCGCGCCGGCGCAACTACCCGCGCCAGACCCTCCTGCAGCGACAACAG
ACGCAGTGCCCGACGCTGCTATTGAGGACACCAAGCGCCCCGCAGCAGAG
GCAATGACAGAGGGAGAGGGAGCAGTGGCATCAGTGGCAGCGCCCATACC
AAGTAAAAAGCCTCGGAACGCTCCTGCCCCGCCAATCTCCGCGACTTCAG
AGTATGTGACCGAGGAGACAACTTTCCTGATTCCTAAGGCTTCGATCAAG
CGCATCATGAAACTGGACCCGGACTCGAAGCAATTATCCCAGGACGCCAT
CATGCTAATGGCCAAGGCCACGGAGTTGTTTGTGGATAAGCTTGCCAAGG
CCTCGCATGCAATGGCGGTATCGAATAAACGGAAGACGATAAAGTATGAG
GACATTGCTGATGCCCGCCTTTCGGTTAAGTCTCTGGAGTTTTTGGATGG
AGTGGTGCCGCAGATTCCCTGA
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Synonyms
Publications