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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr4 | genome | chr4:184081..189874 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G00500.1 vs.
Match: EWM28490.1 (dna repair protein rad50 [Nannochloropsis gaditana]) HSP 1 Score: 1819.7 bits (4712), Expect = 0.000e+0 Identity = 989/1401 (70.59%), Postives = 1143/1401 (81.58%), Query Frame = 0
Query: 1 MAGLEKMALRGIRSFSPDDEQTIEFYSPLTMIVGQNGSGKTTIIECLKYACTGKLPPGGASTAGQSWIHDPKLTDDTEVKASIKLRFKARDGKRMVVVRSLQLQYKGKSKNPTFKQLEGVIKTINPVTKKSESLGHKCQDLNTFVPQATGISTAILESVVFCHQEESSWPLQDGATLKKKFDDIFESTRYTKALEAIEKCRKVRAEEHKNLKLDLAALAENRETASDIRRELERKTAEIQEIQAKQDKVEERISTLQNRAREASRELAEFNEVAQVIEKKAMLVDEKKRGVVEKKRSLGTQEMTGQSDESLQKRLASFAKDQEEVQRELARLRQKEMTHKKAIDGYRAEVQKLVGRRGELKAQMKQLTQLVEDRNKDIVALCDKYALAQPRTLSGALSQVIRVGGGGGGGERSASASASPAGVKDSHSHMAVELPEVEMKRFLFDFQGKKENLTTELDAFRTDKTRVLNKKRGEMTELEATLLANETAKRARQAEMKEIEAKFAAITNDLHGQAAVPASVLDAMRQEVAKAKAEYTAMTEKSKEMEFEKTIKCLQKDLREVAVELDSEQKVWESMKESSTERTEYEVNFRDYTNKMEELKAELARFNSSLYRPLVPQDLTPELDDIQQAVTHLNAILFPQHDAAARSQARELTLARQRLTELATNQSRDKQEQERYVAKIGEMEKQSLVEKARRILEQLQGEFEEKIRKNPEKYSYKFDDREIDEAVKEVEQVVKMDVANLHDLQSKLNFAAKVVKSSSESRVCECCTSSLSARAVKALEDNMGGFMARWEDKANRLREETLPMHEQYLRDLQACTSDMKAMASLREALGEVEGRLKGAEEQVAALATTVHGLEEGLRDMEAAKKKLDESKVQVVGISNACAELYKKKEELDFRQKRLQAYSVDGDSRGLEEVETSLKTLRATQAEANRRLQEIQAEQSKASKRLINQADLVRAAETSLEAKLKTMSRSQELEKEKAALKMRQGQVEAEVQQATEEEIPLRQELKGVQADFDALKSRLDAEDADRQRQRIECTQRYQDFEALQRKVREMEGIGLGGLLAGVEQQQQQLEHDIQGMEGQLEEMGPQVQVVAKRLEDKDQTRRQIEDNLTYRRMQAEVKKAEEEMVELQGQLEGFEEKGELARKVEKIQQQWREARETKVRHEARIDTLAAVQQEQQAKLGSSKFQNIEQRYRDTKITAETTNLAVEDLQKYHKALDRALMQYHKMKIEEINKIIRELWTRTYQGNDIEEIAIVSGEDGGGKATRSYNYRVVMKKGQTLLDMRGRCSAGQRVLASIVIRLALAEAFCINCGVMTLDEPTTNLDHENKGGLAGAIARLIAERGRQQNFQLIVITHDEDFVDMVKQELSTQAGVSMPEYYWRVSREPAPGGRAYSTIQVCEWGTI 1402
MAGLEKMALRGIRSFSPDDEQTIEFYSPLTMIVGQNGSGKTTIIECLKYACTGKLPPGGAST+GQSWIHDPKLTDDTEVKASIKLRFKARDGKRMVVVRSLQLQYKGKSKNPTFKQLEGVIKTINPVTKKSESLGHKCQDLN FVPQAT IS AILESVVFCHQEESSWPLQDGATLKKKFDDIFES RYTKALEAIEKCRK RAEE KNL+LDLAAL ENRETASDI ELERKTAEIQ+IQAKQ+ VE+RI+TLQ R R+A L E V Q + K MLV+E+ R V EKK+SLG QEM G++DESLQ RL SFAK+ E+VQREL RLRQKE THKKA + YRAE+Q++VG+RGELKAQM Q+ QL+ DRN++IVA+CD YAL PRTL+G LSQ G ER G + SH+A ELP VE KRFL DFQGK+E L+ EL+AF+T+K+R L +KR EMTELEA LLANE+ K ARQAEMK IE KF ITN+LH QAAVPASVL +M+QEV +A+A+Y + K + MEFEKT+K L+K LREVAVELD EQKVWESMKE+S ERTEY+VN RD+T+KME L+AE+ARFNSS+YRP + DL P+L+ +QQAVT LNA L P H A ++QA L ARQ LTE+ TNQ+RDK+E + Y A+I +EK+S VEKAR ILE LQ EF EKIRKNPEKY Y+FDDR+I+ A++EV+ VV D+ + H+ ++K F ++ S E+ C CCT+ L A+ V+ LE+++ + +W DK +L E +LP H+Q L DL+AC +D+K + LR L EVE R+K A EQ A +V LEE + E KK ++E QV G+S+ CAELYKK+EELDF++KRLQ YSVDGD R LE VE SLK+LRATQ E NR LQE QAEQSKA+KR+INQA+LVRAAET+LE K+K MSRSQELE+EK LK RQ +VEAEV+ ATEEEIPLRQ LK QADF+ LK RLDAE+AD+QR+ IEC QRYQ F+ALQ K+++ E LG L +E Q +L+ D+QG+EGQLEE+ PQ+QVVA R E KDQ RRQIEDN+TYRRM +E++K +EE+ L+ +++ EEK L R ++K+Q Q+R+ARE K+R+EARIDTL AVQQEQQAKL S K +NIE+R+R+ KI AETT LAVEDLQKYHKALDRALMQYHKMKIEEINKIIRELWTRTY+GNDIEEIAIVSGEDGGG+ATRSYNYRVVMKKG TLLDMRGRCSAGQRVLASIVIRLALAE FCI+CGVMTLDEPTTNLDHENK GLAGAIARLIAER RQQNFQLIVITHDEDFVDMVKQELSTQ G SMPEYYWR+SREPAPGGRAYSTIQ CEWGTI
Sbjct: 1 MAGLEKMALRGIRSFSPDDEQTIEFYSPLTMIVGQNGSGKTTIIECLKYACTGKLPPGGASTSGQSWIHDPKLTDDTEVKASIKLRFKARDGKRMVVVRSLQLQYKGKSKNPTFKQLEGVIKTINPVTKKSESLGHKCQDLNAFVPQATDISAAILESVVFCHQEESSWPLQDGATLKKKFDDIFESARYTKALEAIEKCRKGRAEELKNLRLDLAALTENRETASDIHHELERKTAEIQDIQAKQETVEDRINTLQARLRQAEEALVEVKGVLQALGTKEMLVEERTRAVAEKKKSLGCQEMEGETDESLQARLVSFAKEHEDVQRELTRLRQKETTHKKATENYRAEMQRMVGQRGELKAQMGQVQQLMADRNREIVAMCDAYALPLPRTLAGTLSQA-------SGTERG------DVGNRAIMSHVAAELPVVETKRFLSDFQGKQETLSRELEAFKTEKSRCLTRKRAEMTELEAKLLANESGKTARQAEMKNIEEKFTEITNELHRQAAVPASVLSSMQQEVERARADYEVVAAKGRGMEFEKTVKNLEKTLREVAVELDGEQKVWESMKENSKERTEYDVNQRDHTSKMERLEAEVARFNSSMYRPFLSHDLAPDLNTMQQAVTELNAKLIPTHATAVKTQADALVQARQELTEIGTNQARDKREADMYAAEIDGLEKRSAVEKARHILEALQEEFAEKIRKNPEKYPYRFDDRDIEGALREVQAVVDTDIRSSHEFRTKKGFCELLIDQSKEANTCMCCTTPLDAKGVELLEESLATGIRKWTDKVQKL-EVSLPRHQQQLADLRACATDVKELIPLRAKLCEVEERMKLANEQNAKWRASVRSLEEEMVKKERQKKNVEECLSQVTGMSSTCAELYKKREELDFKRKRLQTYSVDGDERDLEAVEASLKSLRATQTETNRHLQETQAEQSKAAKRMINQAELVRAAETALEEKVKMMSRSQELEQEKTRLKARQCEVEAEVKLATEEEIPLRQALKQYQADFETLKVRLDAEEADKQRKVIECMQRYQGFDALQCKLQDWEKKALGTQLVELEAAQARLKQDLQGVEGQLEEIAPQIQVVANRSEGKDQLRRQIEDNVTYRRMLSELEKEKEELAMLRKRVDENEEKEALERALDKVQNQYRDAREMKIRNEARIDTLTAVQQEQQAKLRSDKLKNIEKRFRNVKIMAETTMLAVEDLQKYHKALDRALMQYHKMKIEEINKIIRELWTRTYRGNDIEEIAIVSGEDGGGRATRSYNYRVVMKKGATLLDMRGRCSAGQRVLASIVIRLALAETFCISCGVMTLDEPTTNLDHENKEGLAGAIARLIAERSRQQNFQLIVITHDEDFVDMVKQELSTQTGFSMPEYYWRISREPAPGGRAYSTIQACEWGTI 1387
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G00500.1 ID=NO04G00500.1|Name=NO04G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=5112bp
AGATAGTGGGCTTTGGCTTGAGCTATGGAAGGAGGGGGCAGGAGGTAAGG
GCGAGGCTATGTGATCGAAAAATGATTTAATCTATCTTGTCCTTGGCTTT
TGAGCCTGCTCGCCCGGCAAAGAAAAAGCAAAAGTATGAGAACGTAAGAT
GTTTGACTGTGACTGTGAGGACAGCATTGTGTGCGTGGGCGTGTGTGGCT
TGGATTTTGAGCAGCAACATCTCGCTAACGCCCGCGGCGAGTCTTCGTCG
TTTTTCCAGGCCGCCTCCGTGCACAACACATTTTCCAGCACATAACACAC
AGGCACATAGCGGCTTCAAGAGGATGGCAAAAAGTCGCACGTTCTTGTGT
TGACGCAATACGCTATAAAGGACATCGACTTCTTCACAGGTCCATCTCTT
CAACGCCTTGAAACACGTCATCAACCCACTCCCTCAACCAGCACAATGGC
GGGCCTGGAAAAAATGGCCCTCCGGGGCATCCGTTCTTTTTCTCCGGATG
ACGAGCAGACCATCGAATTCTATAGCCCACTGACGATGATTGTGGGGCAG
AATGGTTCGGGGAAGACTACCATTATCGAGTGTCTCAAGTATGCCTGCAC
GGGCAAGCTTCCTCCCGGGGGGGCATCCACGGCCGGACAGAGCTGGATCC
ACGACCCAAAGCTCACCGACGATACGGAGGTGAAGGCCTCGATCAAGCTG
CGCTTCAAGGCCCGAGATGGGAAAAGGATGGTGGTTGTCCGTTCCCTCCA
ACTTCAGTACAAAGGCAAGAGCAAGAACCCCACCTTCAAGCAGCTCGAAG
GCGTGATCAAGACCATCAACCCCGTCACCAAGAAATCGGAGTCCCTCGGC
CACAAATGCCAAGATCTCAACACTTTCGTTCCTCAAGCCACGGGTATCTC
CACCGCCATCCTCGAAAGCGTTGTTTTCTGTCACCAGGAAGAAAGCAGCT
GGCCCTTACAAGACGGCGCTACGCTCAAGAAGAAATTCGACGACATTTTC
GAGTCCACCCGTTACACAAAGGCCTTGGAAGCCATTGAAAAATGCCGGAA
AGTTCGGGCAGAAGAACACAAAAACCTCAAGTTGGACCTGGCGGCCCTTG
CCGAGAATAGGGAGACGGCCAGTGACATACGCCGAGAACTCGAGAGGAAA
ACCGCGGAAATCCAAGAGATTCAAGCCAAGCAAGACAAGGTGGAAGAACG
TATCAGCACCTTGCAGAACCGCGCACGGGAGGCCTCGAGGGAGTTGGCAG
AATTCAACGAGGTGGCTCAGGTCATTGAAAAGAAGGCCATGTTGGTGGAC
GAAAAAAAGCGCGGTGTTGTGGAGAAGAAAAGAAGTTTGGGCACCCAAGA
AATGACGGGGCAGAGCGACGAGTCCCTCCAGAAGCGCTTGGCTTCCTTTG
CTAAGGACCAGGAGGAGGTGCAGCGGGAGTTGGCCCGGCTGCGACAAAAG
GAGATGACGCACAAGAAGGCCATTGATGGGTATAGGGCAGAAGTGCAGAA
ACTCGTTGGAAGACGGGGAGAGCTCAAGGCTCAAATGAAGCAGTTGACCC
AGTTGGTCGAAGATAGGAACAAGGACATTGTGGCGTTATGTGATAAGTAT
GCCTTGGCCCAGCCGAGAACGTTGTCGGGGGCGCTGTCACAGGTGATTAG
GGTGGGTGGTGGTGGAGGTGGGGGAGAAAGGTCTGCGTCGGCGTCGGCCT
CGCCGGCGGGTGTGAAGGACTCACACTCTCATATGGCGGTGGAGTTGCCG
GAGGTGGAGATGAAGAGATTTTTGTTTGATTTCCAGGGGAAGAAAGAGAA
TTTGACTACGGAGTTGGACGCGTTTCGGACGGACAAGACGCGGGTGTTGA
ACAAAAAGAGGGGGGAGATGACAGAGTTGGAAGCCACTTTGCTGGCGAAC
GAGACGGCCAAAAGGGCCAGGCAGGCGGAGATGAAGGAGATAGAGGCAAA
GTTCGCCGCAATCACGAATGATTTACACGGGCAAGCAGCGGTCCCGGCGT
CGGTTTTGGATGCTATGAGGCAAGAGGTGGCGAAAGCCAAGGCGGAATAC
ACGGCCATGACCGAGAAAAGCAAAGAAATGGAATTCGAAAAAACGATCAA
ATGCCTCCAGAAGGACTTAAGGGAGGTAGCCGTCGAATTAGATAGCGAAC
AGAAAGTCTGGGAGTCCATGAAAGAGAGCAGCACTGAGCGGACGGAATAC
GAAGTCAACTTCCGAGACTACACGAACAAAATGGAAGAGCTAAAGGCAGA
GCTCGCCCGCTTCAACAGCAGCCTCTACCGGCCCCTTGTCCCTCAAGACC
TGACCCCCGAGCTCGATGACATTCAGCAGGCCGTGACGCACTTGAATGCG
ATACTTTTCCCCCAACACGACGCAGCCGCCAGATCTCAAGCCCGTGAACT
CACCCTTGCCCGTCAACGTCTCACCGAGCTGGCAACCAACCAATCAAGGG
ACAAGCAAGAACAAGAGCGGTACGTCGCCAAAATAGGCGAGATGGAGAAG
CAGAGCTTGGTGGAGAAGGCAAGGCGGATCCTGGAACAGCTGCAGGGGGA
ATTCGAGGAGAAGATTCGCAAGAATCCGGAGAAGTACTCGTACAAATTCG
ATGACCGAGAGATCGATGAGGCCGTGAAGGAGGTGGAGCAAGTGGTGAAG
ATGGACGTGGCAAATTTGCATGATTTACAGAGCAAGCTCAATTTTGCCGC
AAAAGTTGTGAAGAGTAGTAGTGAGTCGAGGGTGTGTGAGTGCTGTACGA
GCTCGTTGAGCGCCAGAGCCGTGAAAGCCCTCGAGGATAATATGGGAGGG
TTTATGGCCAGGTGGGAGGACAAAGCCAACCGTCTACGGGAGGAGACTCT
GCCCATGCACGAGCAATATCTACGAGACCTGCAGGCCTGCACCTCGGACA
TGAAGGCCATGGCTTCACTGAGGGAGGCATTGGGGGAGGTGGAAGGGAGG
CTGAAGGGCGCGGAGGAGCAGGTAGCTGCGTTGGCGACGACGGTGCACGG
GTTAGAGGAGGGGTTGCGAGATATGGAGGCGGCGAAGAAGAAGCTGGATG
AGAGCAAGGTTCAGGTGGTAGGGATTAGCAATGCCTGCGCGGAATTGTAC
AAAAAGAAGGAGGAATTAGATTTTAGACAGAAGCGATTACAGGCGTATTC
GGTGGATGGGGACTCTCGTGGGTTAGAGGAGGTGGAAACGAGCCTCAAAA
CCTTACGGGCGACGCAAGCGGAGGCAAATCGCCGCTTGCAGGAAATTCAG
GCGGAGCAGAGCAAGGCGAGCAAACGGTTGATTAACCAGGCGGACCTCGT
GAGGGCCGCCGAGACGTCGTTGGAAGCCAAGTTGAAGACAATGAGCCGGA
GTCAGGAGCTGGAGAAAGAGAAGGCAGCACTCAAGATGAGACAGGGGCAG
GTAGAGGCGGAGGTGCAGCAGGCAACGGAGGAAGAAATACCCCTGAGGCA
GGAACTGAAGGGCGTGCAGGCCGACTTCGATGCGCTCAAGTCGAGGTTGG
ATGCAGAGGATGCGGACAGGCAGAGGCAGCGAATTGAGTGCACCCAGCGG
TACCAGGATTTCGAGGCGTTGCAGCGCAAGGTGAGGGAGATGGAGGGCAT
AGGACTGGGAGGGCTGCTGGCTGGGGTGGAGCAGCAGCAGCAGCAGCTAG
AGCACGACATTCAAGGGATGGAGGGGCAGCTGGAGGAAATGGGGCCTCAA
GTGCAGGTGGTCGCAAAGAGGCTGGAGGATAAGGACCAGACGAGGAGGCA
GATCGAGGATAATTTGACGTATCGACGCATGCAGGCAGAGGTGAAGAAGG
CGGAGGAGGAGATGGTGGAGTTGCAGGGGCAGTTGGAAGGCTTTGAGGAG
AAGGGGGAGCTGGCAAGGAAGGTGGAGAAGATACAGCAGCAGTGGCGCGA
GGCGAGGGAGACGAAAGTGAGACACGAAGCCAGGATTGATACACTGGCGG
CGGTCCAGCAGGAACAGCAGGCGAAGCTAGGCTCAAGCAAATTCCAGAAT
ATCGAGCAAAGGTACAGAGACACTAAGATCACGGCTGAAACGACCAATCT
CGCGGTGGAAGACTTGCAGAAGTATCATAAAGCCCTGGACCGCGCTTTGA
TGCAATACCACAAGATGAAGATAGAAGAGATCAACAAGATCATCCGGGAG
CTGTGGACACGCACGTATCAAGGCAACGACATCGAGGAAATTGCAATCGT
GTCGGGGGAGGATGGGGGGGGAAAAGCGACACGCTCCTACAATTATCGAG
TGGTGATGAAAAAGGGACAAACGTTGTTGGACATGCGGGGGCGGTGTTCA
GCGGGACAGAGGGTGCTGGCGAGCATTGTGATTCGCCTGGCCTTGGCCGA
GGCGTTTTGCATCAATTGCGGGGTGATGACTTTGGATGAGCCGACGACGA
ATTTGGACCATGAGAATAAGGGAGGGCTGGCAGGAGCAATCGCGAGGTTG
ATTGCCGAGAGGGGCAGGCAGCAGAATTTTCAATTGATTGTGATTACGCA
CGATGAGGACTTTGTGGATATGGTGAAGCAGGAGCTGAGCACGCAGGCGG
GAGTTTCGATGCCGGAGTACTACTGGCGCGTTTCCCGGGAACCGGCACCT
GGTGGACGGGCTTACTCCACCATCCAGGTCTGTGAGTGGGGCACCATCTA
AGGTGGAGAAGGTAAAGGGAAAAAGAGGGAGGGAAAGAGTGAACAAATGA
GGAGGGAAGGACAGACGGAGGGAAGAGTGTTTGTGCGTGGACAAGGGGGA
GAGATGCAGGTGGCCGGGCCGGAAAGTCCGGCCCTGGGGCTGGAGATCAA
GAAAGTTAGACACTCAGAGTCAATAGAAGCATATGTACATAAGAAGGTTC
CGAATGGCATAGGATCTTGGACCCGATATGTCTGTTATGAACAGTAGCAT
CAGAACTCAGAAAGCTCAGAAGGGATGGGAGCGTAGAGAGAGAGTGCGCG
ACAAGACAAGGATACAAATGAAAAACAAACCACGATATTCAGCTCGTGAT
TTATTATTTTACCTCGTATGGACACCGCAATACAATTACGTCGCTTGAGC
TCGGGCTGGCAACAAATCCACTATAGCAAGGGTGGGGAGGTCGCCAAAGT
GTCGAAGTAAAT back to topprotein sequence of NO04G00500.1 >NO04G00500.1-protein ID=NO04G00500.1-protein|Name=NO04G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1402bp
MAGLEKMALRGIRSFSPDDEQTIEFYSPLTMIVGQNGSGKTTIIECLKYA
CTGKLPPGGASTAGQSWIHDPKLTDDTEVKASIKLRFKARDGKRMVVVRS
LQLQYKGKSKNPTFKQLEGVIKTINPVTKKSESLGHKCQDLNTFVPQATG
ISTAILESVVFCHQEESSWPLQDGATLKKKFDDIFESTRYTKALEAIEKC
RKVRAEEHKNLKLDLAALAENRETASDIRRELERKTAEIQEIQAKQDKVE
ERISTLQNRAREASRELAEFNEVAQVIEKKAMLVDEKKRGVVEKKRSLGT
QEMTGQSDESLQKRLASFAKDQEEVQRELARLRQKEMTHKKAIDGYRAEV
QKLVGRRGELKAQMKQLTQLVEDRNKDIVALCDKYALAQPRTLSGALSQV
IRVGGGGGGGERSASASASPAGVKDSHSHMAVELPEVEMKRFLFDFQGKK
ENLTTELDAFRTDKTRVLNKKRGEMTELEATLLANETAKRARQAEMKEIE
AKFAAITNDLHGQAAVPASVLDAMRQEVAKAKAEYTAMTEKSKEMEFEKT
IKCLQKDLREVAVELDSEQKVWESMKESSTERTEYEVNFRDYTNKMEELK
AELARFNSSLYRPLVPQDLTPELDDIQQAVTHLNAILFPQHDAAARSQAR
ELTLARQRLTELATNQSRDKQEQERYVAKIGEMEKQSLVEKARRILEQLQ
GEFEEKIRKNPEKYSYKFDDREIDEAVKEVEQVVKMDVANLHDLQSKLNF
AAKVVKSSSESRVCECCTSSLSARAVKALEDNMGGFMARWEDKANRLREE
TLPMHEQYLRDLQACTSDMKAMASLREALGEVEGRLKGAEEQVAALATTV
HGLEEGLRDMEAAKKKLDESKVQVVGISNACAELYKKKEELDFRQKRLQA
YSVDGDSRGLEEVETSLKTLRATQAEANRRLQEIQAEQSKASKRLINQAD
LVRAAETSLEAKLKTMSRSQELEKEKAALKMRQGQVEAEVQQATEEEIPL
RQELKGVQADFDALKSRLDAEDADRQRQRIECTQRYQDFEALQRKVREME
GIGLGGLLAGVEQQQQQLEHDIQGMEGQLEEMGPQVQVVAKRLEDKDQTR
RQIEDNLTYRRMQAEVKKAEEEMVELQGQLEGFEEKGELARKVEKIQQQW
REARETKVRHEARIDTLAAVQQEQQAKLGSSKFQNIEQRYRDTKITAETT
NLAVEDLQKYHKALDRALMQYHKMKIEEINKIIRELWTRTYQGNDIEEIA
IVSGEDGGGKATRSYNYRVVMKKGQTLLDMRGRCSAGQRVLASIVIRLAL
AEAFCINCGVMTLDEPTTNLDHENKGGLAGAIARLIAERGRQQNFQLIVI
THDEDFVDMVKQELSTQAGVSMPEYYWRVSREPAPGGRAYSTIQVCEWGT
I* back to topmRNA from alignment at chr4:184081..189874+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G00500.1 ID=NO04G00500.1|Name=NO04G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=5794bp|location=Sequence derived from alignment at chr4:184081..189874+ (Nannochloropsis oceanica)
AGATAGTGGGCTTTGGCTTGAGCTATGGAAGGAGGGGGCAGGAGGTAAGG
GCGAGGCTATGTGATCGAAAAATGATTTAATCTATCTTGTCCTTGGCTTT
TGAGCCTGCTCGCCCGGCAAAGAAAAAGCAAAAGTATGAGAACGTAAGAT
GTTTGACTGTGACTGTGAGGACAGCATTGTGTGCGTGGGCGTGTGTGGCT
TGGATTTTGAGCAGCAACATCTCGCTAACGCCCGCGGCGAGTCTTCGTCG
TTTTTCCAGGCCGCCTCCGTGCACAACACATTTTCCAGCACATAACACAC
AGGCACATAGCGGCTTCAAGAGGATGGCAAAAAGTCGCACGTTCTTGTGT
TGACGCAATACGCTATAAAGTAAGGCGCGCCCGTCGATTGTTGTAGGAAG
CGAGGCGAGTTGGCACGATAGCAAGTCAGCCATGTCCATGGATAACGCAT
GACCCCTCACGTCCAGTACCCTCTGCGCGTTGTTTGGTAAGCTGCCGCTT
TGTTGTGTTTCAGGCGGACAGGCGACGTGGTTGATGTTTCCCCTTCGACT
GGGGCTTCTTCCTCGCAGCAGCGGTAGACCACCATACACACACGCAACAT
GGCATGGTGCACAGTGTTGGGTGTTGCCACTCGTCGCTCCCATATATTTG
CAAATGCCCACGAATCCCCTTGTCTGATCACCCCACATACAGGGACATCG
ACTTCTTCACAGGTCCATCTCTTCAACGCCTTGAAACACGTCATCAACCC
ACTCCCTCAACCAGCACAATGGCGGGCCTGGAAAAAATGGCCCTCCGGGG
CATCCGTTCTTTTTCTCCGGATGACGAGCAGACCATCGAATTCTATAGCC
CACTGACGATGATTGTGGGGCAGAATGGTTCGGGGAAGACTACCATTATC
GAGTGTCTCAAGTATGCCTGCACGGGCAAGCTTCCTCCCGGGGGGGCATC
CACGGCCGGACAGAGCTGGATCCACGACCCAAAGCTCACCGACGATACGG
AGGTGAAGGCCTCGATCAAGCTGCGCTTCAAGGCCCGAGATGGGAAAAGG
ATGGTGGTTGTCCGTTCCCTCCAACTTCAGTACAAAGGCAAGAGCAAGAA
CCCCACCTTCAAGCAGCTCGAAGGCGTGATCAAGACCATCAACCCCGTCA
CCAAGAAATCGGAGTCCCTCGGCCACAAATGCCAAGATCTCAACACTTTC
GTTCCTCAAGCCACGGGTATCTCCACCGCCATCCTCGAAAGCGTTGTTTT
CTGTCACCAGGAAGAAAGCAGCTGGCCCTTACAAGACGGCGCTACGCTCA
AGAAGAAATTCGACGACATTTTCGAGTCCACCCGTTACACAAAGGCCTTG
GAAGCCATTGAAAAATGCCGGAAAGTTCGGGCAGAAGAACACAAAAACCT
CAAGTTGGACCTGGCGGCCCTTGCCGAGAATAGGGAGACGGCCAGTGACA
TACGCCGAGAACTCGAGAGGAAAACCGCGGAAATCCAAGAGATTCAAGCC
AAGCAAGACAAGGTGGAAGAACGTATCAGCACCTTGCAGAACCGCGCACG
GGAGGCCTCGAGGGAGTTGGCAGAATTCAACGAGGTGGCTCAGGTCATTG
AAAAGAAGGCCATGTTGGTGGACGAAAAAAAGCGCGGTGTTGTGGAGAAG
AAAAGAAGTTTGGGCACCCAAGAAATGACGGGGCAGAGCGACGAGTCCCT
CCAGAAGCGCTTGGCTTCCTTTGCTAAGGACCAGGAGGAGGTGCAGCGGG
AGTTGGCCCGGCTGCGACAAAAGGAGATGACGCACAAGAAGGCCATTGAT
GGGTATAGGGCAGAAGTGCAGAAACTCGTTGGAAGACGGGGAGAGCTCAA
GGCTCAAATGAAGCAGTTGACCCAGTTGGTCGAAGATAGGAACAAGGACA
TTGTGGCGTTATGTGATAAGTATGCCTTGGCCCAGCCGAGAACGTTGTCG
GGGGCGCTGTCACAGGTGATTAGGGTGGGTGGTGGTGGAGGTGGGGGAGA
AAGGTCTGCGTCGGCGTCGGCCTCGCCGGCGGGTGTGAAGGACTCACACT
CTCATATGGCGGTGGAGTTGCCGGAGGTGGAGATGAAGAGATTTTTGTTT
GATTTCCAGGGGAAGAAAGAGAATTTGACTACGGAGTTGGACGCGTTTCG
GACGGACAAGACGCGGGTGTTGAACAAAAAGAGGGGGGAGATGACAGAGT
TGGAAGCCACTTTGCTGGCGAACGAGACGGCCAAAAGGGCCAGGCAGGCG
GAGATGAAGGAGATAGAGGCAAAGTTCGCCGCAATCACGAATGATTTACA
CGGGCAAGCAGCGGTCCCGGCGTCGGTTTTGGATGCTATGAGGCAAGAGG
TGGCGAAAGCCAAGGCGGAATACACGGCCATGACCGAGAAAAGCAAAGAA
ATGGAATTCGAAAAAACGATCAAATGCCTCCAGAAGGACTTAAGGGAGGT
AGCCGTCGAATTAGATAGCGAACAGAAAGTCTGGGAGTCCATGAAAGAGA
GCAGCACTGAGCGGACGGAATACGAAGTCAACTTCCGAGACTACACGAAC
AAAATGGAAGAGCTAAAGGCAGAGCTCGCCCGCTTCAACAGCAGCCTCTA
CCGGCCCCTTGTCCCTCAAGACCTGACCCCCGAGCTCGATGACATTCAGC
AGGCCGTGACGCACTTGAATGCGATACTTTTCCCCCAACACGACGCAGCC
GCCAGATCTCAAGCCCGTGAACTCACCCTTGCCCGTCAACGTCTCACCGA
GCTGGCAACCAACCAATCAAGGGACAAGCAAGAACAAGAGCGGTACGTCG
CCAAAATAGGCGAGATGGAGAAGCAGAGCTTGGTGGAGAAGGCAAGGCGG
ATCCTGGAACAGCTGCAGGGGGAATTCGAGGAGAAGATTCGCAAGAATCC
GGAGAAGTACTCGTACAAATTCGATGACCGAGAGATCGATGAGGCCGTGA
AGGAGGTGGAGCAAGTGGTGAAGATGGACGTGGCAAATTTGCATGATTTA
CAGAGCAAGCTCAATTTTGCCGCAAAAGTTGTGAAGAGTAGTAGTGAGTC
GAGGGTGTGTGAGTGCTGTACGAGCTCGTTGAGCGCCAGAGCCGTGAAAG
CCCTCGAGGATAATATGGGAGGGTTTATGGCCAGGTGGGAGGACAAAGCC
AACCGTCTACGGGAGGAGACTCTGCCCATGCACGAGCAATATCTACGAGA
CCTGCAGGCCTGCACCTCGGACATGAAGGCCATGGCTTCACTGAGGGAGG
CATTGGGGGAGGTGGAAGGGAGGCTGAAGGGCGCGGAGGAGCAGGTAGCT
GCGTTGGCGACGACGGTGCACGGGTTAGAGGAGGGGTTGCGAGATATGGA
GGCGGCGAAGAAGAAGCTGGATGAGAGCAAGGTTCAGGTGGTAGGGATTA
GCAATGCCTGCGCGGAATTGTACAAAAAGAAGGAGGAATTAGATTTTAGA
CAGAAGCGATTACAGGCGTATTCGGTGGATGGGGACTCTCGTGGGTTAGA
GGAGGTGGAAACGAGCCTCAAAACCTTACGGGCGACGCAAGCGGAGGCAA
ATCGCCGCTTGCAGGAAATTCAGGCGGAGCAGAGCAAGGCGAGCAAACGG
TTGATTAACCAGGCGGACCTCGTGAGGGCCGCCGAGACGTCGTTGGAAGC
CAAGTTGAAGACAATGAGCCGGAGTCAGGAGCTGGAGAAAGAGAAGGCAG
CACTCAAGATGAGACAGGGGCAGGTAGAGGCGGAGGTGCAGCAGGCAACG
GAGGAAGAAATACCCCTGAGGCAGGAACTGAAGGGCGTGCAGGCCGACTT
CGATGCGCTCAAGTCGAGGTTGGATGCAGAGGATGCGGACAGGCAGAGGC
AGCGAATTGAGTGCACCCAGCGGTACCAGGATTTCGAGGCGTTGCAGCGC
AAGGTGAGGGAGATGGAGGGCATAGGACTGGGAGGGCTGCTGGCTGGGGT
GGAGCAGCAGCAGCAGCAGCTAGAGCACGACATTCAAGGGATGGAGGGGC
AGCTGGAGGAAATGGGGCCTCAAGTGCAGGTGGTCGCAAAGAGGCTGGAG
GATAAGGACCAGACGAGGAGGCAGATCGAGGATAATTTGACGTATCGACG
CATGCAGGCAGAGGTGAAGAAGGCGGAGGAGGAGATGGTGGAGTTGCAGG
GGCAGTTGGAAGGCTTTGAGGAGAAGGGGGAGCTGGCAAGGAAGGTGGAG
AAGATACAGCAGCAGTGGCGCGAGGCGAGGGAGACGAAAGTGAGACACGA
AGCCAGGATTGATACACTGGCGGCGGTCCAGCAGGAACAGCAGGCGAAGC
TAGGCTCAAGCAAATTCCAGAATATCGAGCAAAGGTACAGAGACACTAAG
ATCACGGCTGAAACGACCAATCTCGCGGTGGAAGACTTGCAGAAGTATCA
TAAAGTATGTCCATCCCTCCCTCTCTCCCTACCTCTCCCCCTCCCCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCTCCCCCCTTC
TCTTCCCATTCCTCCATCAATTTGCACTTTTCCTCCTCCCTTCCCTACTC
CTCTCCCCTCCTCACCATCCCTCCCTGTCTGCTGTCCTACCCATTCCTCC
AGGCCCTGGACCGCGCTTTGATGCAATACCACAAGATGAAGATAGAAGAG
ATCAACAAGATCATCCGGGAGCTGTGGACACGCACGTATCAAGGCAACGA
CATCGAGGAAATTGCAATCGTGTCGGGGGAGGATGGGGGGGGAAAAGCGA
CACGCTCCTACAATTATCGAGTGGTGATGAAAAAGGGACAAACGTTGTTG
GACATGCGGGGGCGGTGTTCAGCGGGACAGAGGGTGCTGGCGAGCATTGT
GATTCGCCTGGCCTTGGCCGAGGCGTTTTGCATCAATTGCGGGGTGATGA
CTTTGGATGAGCCGACGACGAATTTGGACCATGAGAATAAGGGAGGGCTG
GCAGGAGCAATCGCGAGGTTGATTGCCGAGAGGGGCAGGCAGCAGAATTT
TCAATTGATTGTGATTACGCACGATGAGGACTTTGTGGATATGGTGAAGC
AGGAGCTGAGCACGCAGGTATGGCAGGGAGGGAGGGAGGGAGGGAGGAGT
GTAGACACTGCTTTTCTGCTGTTTCCTTCTTCCACACCAAGAATCACTTT
CCCAAAAAGTCATTTACATAAGATCCCTTTCTACATATCCCCCTCCTTTT
TCTTCCCTCGAATCTGACAACCGTACAGGCGGGAGTTTCGATGCCGGAGT
ACTACTGGCGCGTTTCCCGGGAACCGGCACCTGGTGGACGGGCTTACTCC
ACCATCCAGGTCTGTGAGTGGGGCACCATCTAAGGTGGAGAAGGTAAAGG
GAAAAAGAGGGAGGGAAAGAGTGAACAAATGAGGAGGGAAGGACAGACGG
AGGGAAGAGTGTTTGTGCGTGGACAAGGGGGAGAGATGCAGGTGGCCGGG
CCGGAAAGTCCGGCCCTGGGGCTGGAGATCAAGAAAGTTAGACACTCAGA
GTCAATAGAAGCATATGTACATAAGAAGGTTCCGAATGGCATAGGATCTT
GGACCCGATATGTCTGTTATGAACAGTAGCATCAGAACTCAGAAAGCTCA
GAAGGGATGGGAGCGTAGAGAGAGAGTGCGCGACAAGACAAGGATACAAA
TGAAAAACAAACCACGATATTCAGCTCGTGATTTATTATTTTACCTCGTA
TGGACACCGCAATACAATTACGTCGCTTGAGCTCGGGCTGGCAACAAATC
CACTATAGCAAGGGTGGGGAGGTCGCCAAAGTGTCGAAGTAAAT back to topCoding sequence (CDS) from alignment at chr4:184081..189874+ >NO04G00500.1 ID=NO04G00500.1|Name=NO04G00500.1|organism=Nannochloropsis oceanica|type=CDS|length=4206bp|location=Sequence derived from alignment at chr4:184081..189874+ (Nannochloropsis oceanica)
ATGGCGGGCCTGGAAAAAATGGCCCTCCGGGGCATCCGTTCTTTTTCTCC
GGATGACGAGCAGACCATCGAATTCTATAGCCCACTGACGATGATTGTGG
GGCAGAATGGTTCGGGGAAGACTACCATTATCGAGTGTCTCAAGTATGCC
TGCACGGGCAAGCTTCCTCCCGGGGGGGCATCCACGGCCGGACAGAGCTG
GATCCACGACCCAAAGCTCACCGACGATACGGAGGTGAAGGCCTCGATCA
AGCTGCGCTTCAAGGCCCGAGATGGGAAAAGGATGGTGGTTGTCCGTTCC
CTCCAACTTCAGTACAAAGGCAAGAGCAAGAACCCCACCTTCAAGCAGCT
CGAAGGCGTGATCAAGACCATCAACCCCGTCACCAAGAAATCGGAGTCCC
TCGGCCACAAATGCCAAGATCTCAACACTTTCGTTCCTCAAGCCACGGGT
ATCTCCACCGCCATCCTCGAAAGCGTTGTTTTCTGTCACCAGGAAGAAAG
CAGCTGGCCCTTACAAGACGGCGCTACGCTCAAGAAGAAATTCGACGACA
TTTTCGAGTCCACCCGTTACACAAAGGCCTTGGAAGCCATTGAAAAATGC
CGGAAAGTTCGGGCAGAAGAACACAAAAACCTCAAGTTGGACCTGGCGGC
CCTTGCCGAGAATAGGGAGACGGCCAGTGACATACGCCGAGAACTCGAGA
GGAAAACCGCGGAAATCCAAGAGATTCAAGCCAAGCAAGACAAGGTGGAA
GAACGTATCAGCACCTTGCAGAACCGCGCACGGGAGGCCTCGAGGGAGTT
GGCAGAATTCAACGAGGTGGCTCAGGTCATTGAAAAGAAGGCCATGTTGG
TGGACGAAAAAAAGCGCGGTGTTGTGGAGAAGAAAAGAAGTTTGGGCACC
CAAGAAATGACGGGGCAGAGCGACGAGTCCCTCCAGAAGCGCTTGGCTTC
CTTTGCTAAGGACCAGGAGGAGGTGCAGCGGGAGTTGGCCCGGCTGCGAC
AAAAGGAGATGACGCACAAGAAGGCCATTGATGGGTATAGGGCAGAAGTG
CAGAAACTCGTTGGAAGACGGGGAGAGCTCAAGGCTCAAATGAAGCAGTT
GACCCAGTTGGTCGAAGATAGGAACAAGGACATTGTGGCGTTATGTGATA
AGTATGCCTTGGCCCAGCCGAGAACGTTGTCGGGGGCGCTGTCACAGGTG
ATTAGGGTGGGTGGTGGTGGAGGTGGGGGAGAAAGGTCTGCGTCGGCGTC
GGCCTCGCCGGCGGGTGTGAAGGACTCACACTCTCATATGGCGGTGGAGT
TGCCGGAGGTGGAGATGAAGAGATTTTTGTTTGATTTCCAGGGGAAGAAA
GAGAATTTGACTACGGAGTTGGACGCGTTTCGGACGGACAAGACGCGGGT
GTTGAACAAAAAGAGGGGGGAGATGACAGAGTTGGAAGCCACTTTGCTGG
CGAACGAGACGGCCAAAAGGGCCAGGCAGGCGGAGATGAAGGAGATAGAG
GCAAAGTTCGCCGCAATCACGAATGATTTACACGGGCAAGCAGCGGTCCC
GGCGTCGGTTTTGGATGCTATGAGGCAAGAGGTGGCGAAAGCCAAGGCGG
AATACACGGCCATGACCGAGAAAAGCAAAGAAATGGAATTCGAAAAAACG
ATCAAATGCCTCCAGAAGGACTTAAGGGAGGTAGCCGTCGAATTAGATAG
CGAACAGAAAGTCTGGGAGTCCATGAAAGAGAGCAGCACTGAGCGGACGG
AATACGAAGTCAACTTCCGAGACTACACGAACAAAATGGAAGAGCTAAAG
GCAGAGCTCGCCCGCTTCAACAGCAGCCTCTACCGGCCCCTTGTCCCTCA
AGACCTGACCCCCGAGCTCGATGACATTCAGCAGGCCGTGACGCACTTGA
ATGCGATACTTTTCCCCCAACACGACGCAGCCGCCAGATCTCAAGCCCGT
GAACTCACCCTTGCCCGTCAACGTCTCACCGAGCTGGCAACCAACCAATC
AAGGGACAAGCAAGAACAAGAGCGGTACGTCGCCAAAATAGGCGAGATGG
AGAAGCAGAGCTTGGTGGAGAAGGCAAGGCGGATCCTGGAACAGCTGCAG
GGGGAATTCGAGGAGAAGATTCGCAAGAATCCGGAGAAGTACTCGTACAA
ATTCGATGACCGAGAGATCGATGAGGCCGTGAAGGAGGTGGAGCAAGTGG
TGAAGATGGACGTGGCAAATTTGCATGATTTACAGAGCAAGCTCAATTTT
GCCGCAAAAGTTGTGAAGAGTAGTAGTGAGTCGAGGGTGTGTGAGTGCTG
TACGAGCTCGTTGAGCGCCAGAGCCGTGAAAGCCCTCGAGGATAATATGG
GAGGGTTTATGGCCAGGTGGGAGGACAAAGCCAACCGTCTACGGGAGGAG
ACTCTGCCCATGCACGAGCAATATCTACGAGACCTGCAGGCCTGCACCTC
GGACATGAAGGCCATGGCTTCACTGAGGGAGGCATTGGGGGAGGTGGAAG
GGAGGCTGAAGGGCGCGGAGGAGCAGGTAGCTGCGTTGGCGACGACGGTG
CACGGGTTAGAGGAGGGGTTGCGAGATATGGAGGCGGCGAAGAAGAAGCT
GGATGAGAGCAAGGTTCAGGTGGTAGGGATTAGCAATGCCTGCGCGGAAT
TGTACAAAAAGAAGGAGGAATTAGATTTTAGACAGAAGCGATTACAGGCG
TATTCGGTGGATGGGGACTCTCGTGGGTTAGAGGAGGTGGAAACGAGCCT
CAAAACCTTACGGGCGACGCAAGCGGAGGCAAATCGCCGCTTGCAGGAAA
TTCAGGCGGAGCAGAGCAAGGCGAGCAAACGGTTGATTAACCAGGCGGAC
CTCGTGAGGGCCGCCGAGACGTCGTTGGAAGCCAAGTTGAAGACAATGAG
CCGGAGTCAGGAGCTGGAGAAAGAGAAGGCAGCACTCAAGATGAGACAGG
GGCAGGTAGAGGCGGAGGTGCAGCAGGCAACGGAGGAAGAAATACCCCTG
AGGCAGGAACTGAAGGGCGTGCAGGCCGACTTCGATGCGCTCAAGTCGAG
GTTGGATGCAGAGGATGCGGACAGGCAGAGGCAGCGAATTGAGTGCACCC
AGCGGTACCAGGATTTCGAGGCGTTGCAGCGCAAGGTGAGGGAGATGGAG
GGCATAGGACTGGGAGGGCTGCTGGCTGGGGTGGAGCAGCAGCAGCAGCA
GCTAGAGCACGACATTCAAGGGATGGAGGGGCAGCTGGAGGAAATGGGGC
CTCAAGTGCAGGTGGTCGCAAAGAGGCTGGAGGATAAGGACCAGACGAGG
AGGCAGATCGAGGATAATTTGACGTATCGACGCATGCAGGCAGAGGTGAA
GAAGGCGGAGGAGGAGATGGTGGAGTTGCAGGGGCAGTTGGAAGGCTTTG
AGGAGAAGGGGGAGCTGGCAAGGAAGGTGGAGAAGATACAGCAGCAGTGG
CGCGAGGCGAGGGAGACGAAAGTGAGACACGAAGCCAGGATTGATACACT
GGCGGCGGTCCAGCAGGAACAGCAGGCGAAGCTAGGCTCAAGCAAATTCC
AGAATATCGAGCAAAGGTACAGAGACACTAAGATCACGGCTGAAACGACC
AATCTCGCGGTGGAAGACTTGCAGAAGTATCATAAAGCCCTGGACCGCGC
TTTGATGCAATACCACAAGATGAAGATAGAAGAGATCAACAAGATCATCC
GGGAGCTGTGGACACGCACGTATCAAGGCAACGACATCGAGGAAATTGCA
ATCGTGTCGGGGGAGGATGGGGGGGGAAAAGCGACACGCTCCTACAATTA
TCGAGTGGTGATGAAAAAGGGACAAACGTTGTTGGACATGCGGGGGCGGT
GTTCAGCGGGACAGAGGGTGCTGGCGAGCATTGTGATTCGCCTGGCCTTG
GCCGAGGCGTTTTGCATCAATTGCGGGGTGATGACTTTGGATGAGCCGAC
GACGAATTTGGACCATGAGAATAAGGGAGGGCTGGCAGGAGCAATCGCGA
GGTTGATTGCCGAGAGGGGCAGGCAGCAGAATTTTCAATTGATTGTGATT
ACGCACGATGAGGACTTTGTGGATATGGTGAAGCAGGAGCTGAGCACGCA
GGCGGGAGTTTCGATGCCGGAGTACTACTGGCGCGTTTCCCGGGAACCGG
CACCTGGTGGACGGGCTTACTCCACCATCCAGGTCTGTGAGTGGGGCACC
ATCTAA back to top
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