NO04G00060.1, NO04G00060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00060.1
Unique NameNO04G00060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1240
Alignment locationchr4:28165..29855 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:28165..29855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G00060.1 vs.
Match: EWM28418.1 (5 ampactivated protein kinase subunit beta [Nannochloropsis gaditana])

HSP 1 Score: 474.2 bits (1219), Expect = 3.000e-130
Identity = 244/294 (82.99%), Postives = 252/294 (85.71%), Query Frame = 0 
Query:    1 MGNFSGKDDSGEMRDGGAGGTLD---GTIPPPAEFHHRRESGGRAGGRDGGGGGGAGGGGAGLAGGGHIMAGGGPGPPSLGTRALPGAEGREGGVGDEMVVDGDDVEEDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFTYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLDIARKEEDLYDTHYPDVEEYSVKEPPPLPPHLRHIILNKVPNEMNPLSLPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP 292
            MGNF+GKDDSGEMR+G  G  LD   G IPPP EFHHRRE GGR GGRDGG GG  GG G G   G H     GPGPPS G   L GAE    G GDEM +DGDD E+DVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDF YIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLDIARKEE+LY T YPD+EEYSVKEPPPLPPHLRHIILNKVPN+ +PL LPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP
Sbjct:    1 MGNFAGKDDSGEMREGRGGSGLDESQGKIPPPTEFHHRREPGGRPGGRDGGYGGEEGGSGIG---GAHTPTSVGPGPPSSGALVLTGAERGAEGAGDEMAIDGDDREDDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFMYIHNLKRGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLDIARKEEELYGTSYPDIEEYSVKEPPPLPPHLRHIILNKVPNDKHPLILPVPQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP 291
The following BLAST results are available for this feature:
BLAST of NO04G00060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28418.13.000e-13082.995 ampactivated protein kinase subunit beta [Nannoc... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00060NO04G00060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00060.1NO04G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00060.1.cds1NO04G00060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00060.1.cds2NO04G00060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00060.1.cds3NO04G00060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00060.1.cds4NO04G00060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00060.1 ID=NO04G00060.1|Name=NO04G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1240bp
CAGCAAATGATTTGCATGGGGTGGGTGAAAAGGCTTGAGGTTGCATGTCT
GCGCGCCCTTGGTCAACCAGGCCACCTCGGTGATAGACACGCAAACGTCT
ATGATGCTGTGCCTGTTTTGATCATCGCGCTTTGCTGGGTGGTTTTTGTT
TGTGTGGCGCCTGGAGCTTGCCATTCGTCTTCGCCTCCTCCTAATCATCA
TCATCGCTCCTCAGGTAGCGCTCTCCCACAACACACCGTACCGATCCACA
GGCACACGCACGACCATGGGCAACTTTTCTGGCAAGGATGACAGCGGTGA
GATGCGGGATGGCGGGGCTGGAGGTACTTTAGATGGGACCATCCCTCCAC
CGGCTGAGTTCCATCATCGCCGCGAGTCGGGAGGGAGAGCAGGTGGGCGG
GATGGAGGCGGAGGAGGCGGGGCTGGCGGTGGAGGTGCAGGGCTTGCAGG
AGGAGGGCACATTATGGCAGGTGGAGGCCCAGGCCCGCCGTCACTAGGTA
CCAGGGCGTTGCCAGGCGCCGAAGGAAGGGAGGGCGGGGTGGGGGACGAG
ATGGTGGTGGACGGGGACGACGTGGAGGAAGATGTGGTACCGACCGTCTT
TCGATGGGAGCATGGCGGGCGACAGGTGTACATTCAAGGGACGTTTAATA
ACTGGGAGCGGCAGATTCCCATGCACCGGAGCGGGAATGACTTCACCTAT
ATCCATAACCTGAAGCGCGGCAAGCACGCCTTCAAGTTCATAGTAGACGA
CGAGTGGCGCTTCGCCCCGGATCAACTGACAGTGGCGGATGTGGAAGGCC
GCATCAACAATTTTATCGACGTGACACACTTCAAGCCCTTCAACGAGGAC
TCTTCTACTCTGGACATTGCACGCAAGGAGGAGGATCTCTACGACACCCA
CTACCCCGACGTGGAGGAGTACAGCGTCAAGGAGCCTCCGCCCCTCCCGC
CCCACCTTCGCCACATCATTTTGAACAAGGTGCCGAATGAGATGAACCCG
CTGTCACTGCCCGTGCCTCAGCACGTGGCGGTGGACCACCTGTACTGCAC
AGCCATCAAGGACGGGATGATGGTTCTAGGCGTCACACAGCGCTTCCGCA
TGAAGTTCGTCACCACTGTGTATTACTCCATGATGCCTTAAGGGAACTGG
CGGGAAACGGGAGGAGGAGTTTGTATAGAAAAAGAAATGGTGAGAAGTAA
AGAAAACCACGTTTTCTCCAAAATGCTCTATTTCTTGAAC
back to top

protein sequence of NO04G00060.1

>NO04G00060.1-protein ID=NO04G00060.1-protein|Name=NO04G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MGNFSGKDDSGEMRDGGAGGTLDGTIPPPAEFHHRRESGGRAGGRDGGGG
GGAGGGGAGLAGGGHIMAGGGPGPPSLGTRALPGAEGREGGVGDEMVVDG
DDVEEDVVPTVFRWEHGGRQVYIQGTFNNWERQIPMHRSGNDFTYIHNLK
RGKHAFKFIVDDEWRFAPDQLTVADVEGRINNFIDVTHFKPFNEDSSTLD
IARKEEDLYDTHYPDVEEYSVKEPPPLPPHLRHIILNKVPNEMNPLSLPV
PQHVAVDHLYCTAIKDGMMVLGVTQRFRMKFVTTVYYSMMP*
back to top

mRNA from alignment at chr4:28165..29855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00060.1 ID=NO04G00060.1|Name=NO04G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1691bp|location=Sequence derived from alignment at chr4:28165..29855- (Nannochloropsis oceanica)
CAGCAAATGATTTGCATGGGGTGGGTGAAAAGGCTTGAGGTTGCATGTCT
GCGCGCCCTTGGTCAACCAGGCCACCTCGGTGATAGACACGCAAACGTCT
ATGATGCTGTGCCTGTTTTGATCATCGCGCTTTGCTGGGTGGTTTTTGTT
TGTGTGGCGCCTGGAGCTTGCCATTCGTCTTCGCCTCCTCCTAATCATCA
TCATCGCTCCTCAGGTAGCGCTCTCCCACAACACACCGTACCGATCCACA
GGCACACGCACGACCATGGGCAACTTTTCTGGCAAGGATGACAGCGGTGA
GATGCGGGATGGCGGGGCTGGAGGTACTTTAGATGGGACCATCCCTCCAC
CGGCTGAGTTCCATCATCGCCGCGAGTCGGGAGGGAGAGCAGGTGGGCGG
GATGGAGGCGGAGGAGGCGGGGCTGGCGGTGGAGGTGCAGGGCTTGCAGG
AGGAGGGCACATTATGGCAGGTGGAGGCCCAGGCCCGCCGTCACTAGGTA
CCAGGGCGTTGCCAGGCGCCGAAGGAAGGGAGGGCGGGGTGGGGGACGAG
ATGGTGGTGGACGGGGACGACGTGGAGGAAGATGTGGTACCGACCGTCTT
TCGATGGGAGCATGGCGGGCGACAGGTACGGCGAACAGGGAGGAAAGAGG
TGTAGAAGGGATGAGAGGCGTGTGGGTTTGGTTTTGTCTGAGAGCAGGCC
GCTGGATAGCGATGTTCGAGTGGCCTCTCCGCTTCACGTCACGCTCTTTT
ACTCATTGCTGCTTCACTCCCCCTCTCTCCCTCTGTTCTTTCCCTAGGTG
TACATTCAAGGGACGTTTAATAACTGGGAGCGGCAGATTCCCATGCACCG
GAGCGGGAATGACTTCACCTATATCCATAACCTGAAGCGCGGCAAGCACG
TACGTCCAGGGGGGCTAAGAAAGGGGGGCTGGGGTGAGGAGGGTATAAAG
GAGCAGCAGGGTTAGTGTGCTTTTCTATCCTGTGCCGTCCATATCACTCA
CTCTCAGTCTTTCCCTACCTACCTCCCACACTCCTCTTTTCCCAGGCCTT
CAAGTTCATAGTAGACGACGAGTGGCGCTTCGCCCCGGATCAACTGACAG
TGGCGGATGTGGAAGGCCGCATCAACAATTTTATCGACGTGACACACTTC
AAGCCCTTCAACGAGGACTCTTCTACTCTGGACATTGCACGCAAGGAGGA
GGATCTCTACGACACCCACTACCCCGACGTGGAGGAGTACAGCGTCAAGG
AGCCTCCGCCCCTCCCGCCCCACCTTCGCCACATCATTTTGAACAAGGTA
AGTAGTAGAGGGGACGGATGGTAGGAGGAAATAGAGTGCTTTATCATTTT
GTAGGGAGGTTGAATGAGTGAGCAGCCCTGTATAAAGACAAAAGGTGCTG
AAGAGAACACTTGACCCTCCCCCCTTCCAGGTGCCGAATGAGATGAACCC
GCTGTCACTGCCCGTGCCTCAGCACGTGGCGGTGGACCACCTGTACTGCA
CAGCCATCAAGGACGGGATGATGGTTCTAGGCGTCACACAGCGCTTCCGC
ATGAAGTTCGTCACCACTGTGTATTACTCCATGATGCCTTAAGGGAACTG
GCGGGAAACGGGAGGAGGAGTTTGTATAGAAAAAGAAATGGTGAGAAGTA
AAGAAAACCACGTTTTCTCCAAAATGCTCTATTTCTTGAAC
back to top

Coding sequence (CDS) from alignment at chr4:28165..29855-

>NO04G00060.1 ID=NO04G00060.1|Name=NO04G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at chr4:28165..29855- (Nannochloropsis oceanica)
ATGGGCAACTTTTCTGGCAAGGATGACAGCGGTGAGATGCGGGATGGCGG
GGCTGGAGGTACTTTAGATGGGACCATCCCTCCACCGGCTGAGTTCCATC
ATCGCCGCGAGTCGGGAGGGAGAGCAGGTGGGCGGGATGGAGGCGGAGGA
GGCGGGGCTGGCGGTGGAGGTGCAGGGCTTGCAGGAGGAGGGCACATTAT
GGCAGGTGGAGGCCCAGGCCCGCCGTCACTAGGTACCAGGGCGTTGCCAG
GCGCCGAAGGAAGGGAGGGCGGGGTGGGGGACGAGATGGTGGTGGACGGG
GACGACGTGGAGGAAGATGTGGTACCGACCGTCTTTCGATGGGAGCATGG
CGGGCGACAGGTGTACATTCAAGGGACGTTTAATAACTGGGAGCGGCAGA
TTCCCATGCACCGGAGCGGGAATGACTTCACCTATATCCATAACCTGAAG
CGCGGCAAGCACGCCTTCAAGTTCATAGTAGACGACGAGTGGCGCTTCGC
CCCGGATCAACTGACAGTGGCGGATGTGGAAGGCCGCATCAACAATTTTA
TCGACGTGACACACTTCAAGCCCTTCAACGAGGACTCTTCTACTCTGGAC
ATTGCACGCAAGGAGGAGGATCTCTACGACACCCACTACCCCGACGTGGA
GGAGTACAGCGTCAAGGAGCCTCCGCCCCTCCCGCCCCACCTTCGCCACA
TCATTTTGAACAAGGTGCCGAATGAGATGAACCCGCTGTCACTGCCCGTG
CCTCAGCACGTGGCGGTGGACCACCTGTACTGCACAGCCATCAAGGACGG
GATGATGGTTCTAGGCGTCACACAGCGCTTCCGCATGAAGTTCGTCACCA
CTGTGTATTACTCCATGATGCCTTAA
back to top
Synonyms
Publications