NO03G04040.1, NO03G04040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04040.1
Unique NameNO03G04040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1757
Alignment locationchr3:1177350..1179697 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1177350..1179697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G04040.1 vs.
Match: XP_005853535.1 (ethylmalonic encephalopathy 1 [Nannochloropsis gaditana CCMP526]; EKU22823.1 ethylmalonic encephalopathy 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 630.6 bits (1625), Expect = 3.900e-177
Identity = 315/436 (72.25%), Postives = 372/436 (85.32%), Query Frame = 0 
Query:   25 TSSSYSLVLLLLVFVGWSSSQSALAFLLKSPSSPVSLYAKALHITPFYPARSCSTTMTVSVAEITTAGKMSEAEASALSDKYKGVLYLATDTGVDKGIESNGFTSLKGLQARHIPVDVKNGLSLQLAADSLKALDELPAPTLVMCSTGGRASAVKCLKKAMEEGWTRDQALAHAESEKLPFVNNCNLRDWVLATVAAKQYMAEPPLIFRPLYEETSWTYTYVLACPVTKEAILIDPVDVTVDRDLEVVGEMGLKLVGALNTHCHADHVTGSGLLAEKVPGCKSMIAAVSGAKACVHLKPGDRVKFGTRYVEARATPGHTNGCMSFVTDDMRMVFTGDALLIRGCGRTDFQQGNSETMFDSIWTQIYSLPQETLVYPGHDYKGRLVSTIGEEKKYNARLAGKTKEEFVEIMNNLKLAYPKKIDVALPANLMDGMMVS 461
            +S+ YS    L++F G     SA AF+  +P     +  K++    F  +R  ST MTV+ A+ITTAGK+ EAE SALSDKYK VLYLATD G DKGIE NGF SL+GL  RH+PVDVK+GLSLQLA D+L+ALDELPAP LV+CS+GGRASAV+CL+KA EEGWT+DQ LA+A   KLPFV N +L+DWVLATVAA++Y  E PL+FRPLYEETSWTYT++L CPVTKEAILIDPVD+TV+RDL+V+ EMGL LV ALNTHCHADHVTGSGLLA+KVPGCKSMIA +SGAKA +HL+PG+RV+FG RYVEARATPGHTNGCM+FVTDDM+M FTGDALLIRGCGRTDFQQG+ ETMF+SIWTQI+SLP ET VYPGHDY+GRL+STIGEEK++N+RL+GK+KEEF+EIMNNLKLAYPKKIDVALPANL+DG++ S
Sbjct:    2 SSALYSPWRPLVIFYG-ICCYSATAFMSSTPFCTRGV-PKSIRSRSFGSSRLAST-MTVTAADITTAGKLGEAETSALSDKYKSVLYLATDKGADKGIEPNGFASLRGLTTRHLPVDVKDGLSLQLATDALQALDELPAPALVVCSSGGRASAVQCLRKATEEGWTKDQTLAYALEMKLPFVKNPSLKDWVLATVAAREYKDELPLLFRPLYEETSWTYTFLLGCPVTKEAILIDPVDLTVERDLQVIKEMGLTLVAALNTHCHADHVTGSGLLAQKVPGCKSMIAKISGAKASIHLEPGNRVRFGRRYVEARATPGHTNGCMTFVTDDMKMAFTGDALLIRGCGRTDFQQGSPETMFESIWTQIFSLPHETSVYPGHDYRGRLMSTIGEEKRFNSRLSGKSKEEFIEIMNNLKLAYPKKIDVALPANLVDGVLAS 434
The following BLAST results are available for this feature:
BLAST of NO03G04040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853535.13.900e-17772.25ethylmalonic encephalopathy 1 [Nannochloropsis gad... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04040NO03G04040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04040.1NO03G04040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04040.1.cds1NO03G04040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04040.1.cds2NO03G04040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04040.1.cds3NO03G04040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04040.1.cds4NO03G04040.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04040.1 ID=NO03G04040.1|Name=NO03G04040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1757bp
ATGGTTGCCTTTAATTTTAATCAAGAAAAAGCAGCCGCGAGTAGTCGCGC
CTGCTGCTTTATCTCAACCACGACGTCGTCGTCTTACTCTCTTGTGCTGC
TCCTTCTCGTCTTCGTGGGGTGGAGCAGCAGCCAATCTGCATTGGCTTTC
TTGCTTAAGTCGCCGTCTTCTCCTGTTAGTCTCTACGCAAAGGCACTCCA
TATCACACCTTTTTACCCTGCACGCAGCTGCAGTACCACCATGACGGTCT
CGGTGGCTGAAATTACGACAGCAGGCAAGATGTCTGAAGCCGAGGCGAGC
GCCCTCTCCGACAAGTACAAGGGCGTGCTTTACTTGGCCACCGACACCGG
TGTAGACAAAGGAATTGAGTCAAATGGCTTTACATCGCTGAAAGGCTTAC
AAGCGCGCCACATCCCAGTCGACGTCAAGAATGGCCTGTCCCTCCAGCTG
GCCGCAGATTCCCTCAAGGCCTTGGACGAGCTCCCTGCCCCCACCCTGGT
CATGTGCAGTACTGGCGGCCGTGCTTCCGCTGTCAAATGCCTGAAAAAAG
CAATGGAAGAGGGATGGACCCGCGACCAAGCTTTGGCCCATGCCGAATCT
GAAAAACTGCCCTTTGTCAACAATTGCAACCTGAGGGACTGGGTGCTCGC
GACGGTGGCCGCCAAGCAATACATGGCTGAGCCTCCCCTGATCTTTCGTC
CCTTGTACGAGGAGACTTCTTGGACCTACACCTACGTCCTGGCCTGCCCT
GTCACGAAAGAGGCGATTTTGATCGATCCTGTGGATGTTACGGTGGACAG
AGATTTGGAAGTGGTGGGGGAAATGGGGTTAAAACTTGTAGGGGCACTGA
ATACTCATTGCCATGCAGACCACGTGACGGGGAGTGGGTTGCTGGCGGAG
AAAGTCCCCGGATGCAAATCCATGATTGCGGCCGTGTCAGGCGCTAAGGC
GTGTGTGCATTTGAAGCCGGGGGATCGGGTCAAGTTTGGCACTCGATACG
TGGAAGCACGGGCGACACCGGGCCATACGAATGGATGTATGTCTTTCGTG
ACGGATGACATGAGGATGGTCTTCACGGGGGACGCATTATTGATTCGCGG
ATGCGGTCGCACGGACTTCCAGCAGGGGAATTCCGAGACGATGTTTGATA
GTATTTGGACGCAGATCTATTCGTTGCCGCAGGAGACGCTGGTTTACCCG
GGGCATGATTACAAGGGGAGGTTGGTGTCCACGATTGGTGAGGAGAAGAA
ATACAATGCCCGATTGGCGGGCAAGACAAAGGAAGAGTTTGTGGAGATTA
TGAATAATCTGAAGCTGGCGTACCCCAAAAAGATTGATGTGGCCTTGCCG
GCGAACTTGATGGATGGAATGATGGTAAGCTAAGGGTAGTACGAGGACGG
TTGTAGCATATGGATATAACAGATGGATAGAACGGATGCAAATGGTGGCC
GACGGATTGCATGAAGACATACCGTTATGGAGAACATGAGTAAATGACTT
TGGGCTTGATGTCGTGGGGAAGGAATCGTGGGTAGCGAGAACGCTTAAAT
TGTAATGGGGAGACGGGGATGAAAGGGAAGATCAGAGGCAGTGAACCCAA
TAAGAATGCCATCGGCAATCATATGAAGAAAAAAGTGATATTTTTTGGTT
TGTTTTGAGTGTTTGAATGTTTGAGCTAGATACACGTGGGCATTGGTACA
GCGGCTGGGGAAACAAAAAACAAAGACAGAAAGAATAAATGTGCAGCATC
CGATGGG
back to top

protein sequence of NO03G04040.1

>NO03G04040.1-protein ID=NO03G04040.1-protein|Name=NO03G04040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MVAFNFNQEKAAASSRACCFISTTTSSSYSLVLLLLVFVGWSSSQSALAF
LLKSPSSPVSLYAKALHITPFYPARSCSTTMTVSVAEITTAGKMSEAEAS
ALSDKYKGVLYLATDTGVDKGIESNGFTSLKGLQARHIPVDVKNGLSLQL
AADSLKALDELPAPTLVMCSTGGRASAVKCLKKAMEEGWTRDQALAHAES
EKLPFVNNCNLRDWVLATVAAKQYMAEPPLIFRPLYEETSWTYTYVLACP
VTKEAILIDPVDVTVDRDLEVVGEMGLKLVGALNTHCHADHVTGSGLLAE
KVPGCKSMIAAVSGAKACVHLKPGDRVKFGTRYVEARATPGHTNGCMSFV
TDDMRMVFTGDALLIRGCGRTDFQQGNSETMFDSIWTQIYSLPQETLVYP
GHDYKGRLVSTIGEEKKYNARLAGKTKEEFVEIMNNLKLAYPKKIDVALP
ANLMDGMMVS*
back to top

mRNA from alignment at chr3:1177350..1179697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04040.1 ID=NO03G04040.1|Name=NO03G04040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2348bp|location=Sequence derived from alignment at chr3:1177350..1179697+ (Nannochloropsis oceanica)
ATGGTTGCCTTTAATTTTGTGTGTCTCGTTCCCTTTTGTTTTCGCTTTCA
TGATTCGACTCTCTCAAAACATATGATCCACAGAATCAAGAAAAAGCAGC
CGCGAGTAGTCGCGCCTGCTGCTTTATCTCAACCACGACGTCGTCGTCTT
ACTCTCTTGTGCTGCTCCTTCTCGTCTTCGTGGGGTGGAGCAGCAGCCAA
TCTGCATTGGCTTTCTTGCTTAAGTCGCCGTCTTCTCCTGTTAGTCTCTA
CGCAAAGGTAACATTCGGGTCACAGCGGCGTCGGTCCTGGTCATGTGTCG
AGCGGCCACCACATGATCCGGCGGCGTTTGTGTCTGTTGAAGAACAACCG
CTCCTTCTACCATGCCATATGTGTTGAAAAAAGATTCATACGCCTACAAA
AACGCCATTTAACCCTCTTGACAGGCACTCCATATCACACCTTTTTACCC
TGCACGCAGCTGCAGTACCACCATGACGGTCTCGGTGGCTGAAATTACGA
CAGCAGGCAAGATGTCTGAAGCCGAGGCGAGCGCCCTCTCCGACAAGTAC
AAGGGCGTGCTTTACTTGGCCACCGACACCGGTGTAGACAAAGGAATTGA
GTCAAATGGCTTTACATCGCTGAAAGGCTTACAAGCGCGCCACATCCCAG
TCGACGTCAAGGTAAGGAGCTGGAACGTTACCAGAGGGAGATTTGGTCGT
TAGGGCGGTGGTATGTCCCACCATCATTGGGAGATTGGTCAGCAGGAATC
AAGCCGTCGCTTGAATCTTGCGTCATATGAGGCCTGCCGATGCAAACTTT
TAGGTGAGAAGCCTGTTATAGATTTCTTTGGTGGTGCTATTTCGTTTCAT
GGGGATGGTGGGAGGAACCTAGAGGGAGAAGAGAGACGCGCATCCTTCGT
TCTTTGGCCATGCGTTCCGATTTTCCTCCAGCTCCTCGGGAATTCATTCT
TACGACCATCTCACATTCGGAAACTTAAGTCTACACAATAGCTCACCTTC
TTGTCCTCCATTATCCACAGAATGGCCTGTCCCTCCAGCTGGCCGCAGAT
TCCCTCAAGGCCTTGGACGAGCTCCCTGCCCCCACCCTGGTCATGTGCAG
TACTGGCGGCCGTGCTTCCGCTGTCAAATGCCTGAAAAAAGCAATGGAAG
AGGGATGGACCCGCGACCAAGCTTTGGCCCATGCCGAATCTGAAAAACTG
CCCTTTGTCAACAATTGCAACCTGAGGGACTGGGTGCTCGCGACGGTGGC
CGCCAAGCAATACATGGCTGAGCCTCCCCTGATCTTTCGTCCCTTGTACG
AGGAGACTTCTTGGACCTACACCTACGTCCTGGCCTGCCCTGTCACGAAA
GAGGCGATTTTGATCGATCCTGTGGATGTTACGGTGGACAGAGATTTGGA
AGTGGTGGGGGAAATGGGGTTAAAACTTGTAGGGGCACTGAATACTCATT
GCCATGCAGACCACGTGACGGGGAGTGGGTTGCTGGCGGAGAAAGTCCCC
GGATGCAAATCCATGATTGCGGCCGTGTCAGGCGCTAAGGCGTGTGTGCA
TTTGAAGCCGGGGGATCGGGTCAAGTTTGGCACTCGATACGTGGAAGCAC
GGGCGACACCGGGCCATACGAATGGATGTATGTCTTTCGTGACGGATGAC
ATGAGGATGGTCTTCACGGGGGACGCATTATTGATTCGCGGATGCGGTCG
CACGGACTTCCAGCAGGGGAATTCCGAGACGATGTTTGATAGTATTTGGA
CGCAGATCTATTCGTTGCCGCAGGAGACGCTGGTTTACCCGGGGCATGAT
TACAAGGGGAGGTTGGTGTCCACGATTGGTGAGGAGAAGAAATACAATGC
CCGATTGGCGGGCAAGACAAAGGAAGAGTTTGTGGAGATTATGAATAATC
TGAAGCTGGCGTACCCCAAAAAGATTGATGTGGCCTTGCCGGCGAACTTG
ATGGATGGAATGATGGTAAGCTAAGGGTAGTACGAGGACGGTTGTAGCAT
ATGGATATAACAGATGGATAGAACGGATGCAAATGGTGGCCGACGGATTG
CATGAAGACATACCGTTATGGAGAACATGAGTAAATGACTTTGGGCTTGA
TGTCGTGGGGAAGGAATCGTGGGTAGCGAGAACGCTTAAATTGTAATGGG
GAGACGGGGATGAAAGGGAAGATCAGAGGCAGTGAACCCAATAAGAATGC
CATCGGCAATCATATGAAGAAAAAAGTGATATTTTTTGGTTTGTTTTGAG
TGTTTGAATGTTTGAGCTAGATACACGTGGGCATTGGTACAGCGGCTGGG
GAAACAAAAAACAAAGACAGAAAGAATAAATGTGCAGCATCCGATGGG
back to top

Coding sequence (CDS) from alignment at chr3:1177350..1179697+

>NO03G04040.1 ID=NO03G04040.1|Name=NO03G04040.1|organism=Nannochloropsis oceanica|type=CDS|length=1383bp|location=Sequence derived from alignment at chr3:1177350..1179697+ (Nannochloropsis oceanica)
ATGGTTGCCTTTAATTTTAATCAAGAAAAAGCAGCCGCGAGTAGTCGCGC
CTGCTGCTTTATCTCAACCACGACGTCGTCGTCTTACTCTCTTGTGCTGC
TCCTTCTCGTCTTCGTGGGGTGGAGCAGCAGCCAATCTGCATTGGCTTTC
TTGCTTAAGTCGCCGTCTTCTCCTGTTAGTCTCTACGCAAAGGCACTCCA
TATCACACCTTTTTACCCTGCACGCAGCTGCAGTACCACCATGACGGTCT
CGGTGGCTGAAATTACGACAGCAGGCAAGATGTCTGAAGCCGAGGCGAGC
GCCCTCTCCGACAAGTACAAGGGCGTGCTTTACTTGGCCACCGACACCGG
TGTAGACAAAGGAATTGAGTCAAATGGCTTTACATCGCTGAAAGGCTTAC
AAGCGCGCCACATCCCAGTCGACGTCAAGAATGGCCTGTCCCTCCAGCTG
GCCGCAGATTCCCTCAAGGCCTTGGACGAGCTCCCTGCCCCCACCCTGGT
CATGTGCAGTACTGGCGGCCGTGCTTCCGCTGTCAAATGCCTGAAAAAAG
CAATGGAAGAGGGATGGACCCGCGACCAAGCTTTGGCCCATGCCGAATCT
GAAAAACTGCCCTTTGTCAACAATTGCAACCTGAGGGACTGGGTGCTCGC
GACGGTGGCCGCCAAGCAATACATGGCTGAGCCTCCCCTGATCTTTCGTC
CCTTGTACGAGGAGACTTCTTGGACCTACACCTACGTCCTGGCCTGCCCT
GTCACGAAAGAGGCGATTTTGATCGATCCTGTGGATGTTACGGTGGACAG
AGATTTGGAAGTGGTGGGGGAAATGGGGTTAAAACTTGTAGGGGCACTGA
ATACTCATTGCCATGCAGACCACGTGACGGGGAGTGGGTTGCTGGCGGAG
AAAGTCCCCGGATGCAAATCCATGATTGCGGCCGTGTCAGGCGCTAAGGC
GTGTGTGCATTTGAAGCCGGGGGATCGGGTCAAGTTTGGCACTCGATACG
TGGAAGCACGGGCGACACCGGGCCATACGAATGGATGTATGTCTTTCGTG
ACGGATGACATGAGGATGGTCTTCACGGGGGACGCATTATTGATTCGCGG
ATGCGGTCGCACGGACTTCCAGCAGGGGAATTCCGAGACGATGTTTGATA
GTATTTGGACGCAGATCTATTCGTTGCCGCAGGAGACGCTGGTTTACCCG
GGGCATGATTACAAGGGGAGGTTGGTGTCCACGATTGGTGAGGAGAAGAA
ATACAATGCCCGATTGGCGGGCAAGACAAAGGAAGAGTTTGTGGAGATTA
TGAATAATCTGAAGCTGGCGTACCCCAAAAAGATTGATGTGGCCTTGCCG
GCGAACTTGATGGATGGAATGATGGTAAGCTAA
back to top
Synonyms
Publications