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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1105224..1108800 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03740.1 vs.
Match: EWM29819.1 (hypothetical protein Naga_100017g53 [Nannochloropsis gaditana]) HSP 1 Score: 478.8 bits (1231), Expect = 3.200e-131 Identity = 239/320 (74.69%), Postives = 271/320 (84.69%), Query Frame = 0
Query: 43 VRRRLHGPPMPMVMMGVQLLILALGSVPSLVNAGFGLGDYRIDVDFFGGEGDLSPAQYKAYLQGKMPATPRGRKYQSPLWYLYSPGLPKIEREAQLAELRYVEQQLGVKFWKVKVDNEKKERFLKSLAEASEAPGDNKIPRRFREEAARSPGTPFFYNLNTGKSIQGMTSCTNLKKWALGKEYRDDPWQGFTSPQFQELMSKTGDDGEKDYMDKYSDHSWILRYRKERDNALAAHKKQYNRRIFWSRFGLAKAPQGDAFERFIEIDRQKEAEQEVKKGWVKPLRSRSAPVSVGSTKSILGRSEKKKKKEEDSKRGRVERR 363
+R + P + + LL L + S +LV G GLGDYRID DF GGEGDLSPAQY+AYLQ K P TPRG+KY SPLWYLYSP +PKIER+AQLAELRYVEQQLG+KFWKVKVD+EKKERFLKSLAEASE P DNK+PRRFREEA+ SP TPFFYNLNTGKSI GMTS TNLKKWALGK+Y+D PWQGF+SPQFQ+L+++TGDDGE++YMDKYS+H+WILRYRKERD ALAAHKKQYNRR+F SRFGLA+AP GDAFERFIEIDR KE EQEV+KGWVKP RSR P+SV STKSILGRS+KKKK E+ KR R +R
Sbjct: 3 LRPKRKQPGRVQIRTTLHLLALIVLST-TLVQGGLGLGDYRIDFDFLGGEGDLSPAQYRAYLQSKTPVTPRGKKYSSPLWYLYSPNIPKIERDAQLAELRYVEQQLGIKFWKVKVDSEKKERFLKSLAEASEPPPDNKLPRRFREEASPSPATPFFYNLNTGKSISGMTSSTNLKKWALGKDYQDGPWQGFSSPQFQDLLARTGDDGEQEYMDKYSNHAWILRYRKERDAALAAHKKQYNRRMFLSRFGLARAPTGDAFERFIEIDRTKEREQEVRKGWVKPSRSRPTPLSVRSTKSILGRSDKKKKSTEEKKRARTGKR 321
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03740.1 ID=NO03G03740.1|Name=NO03G03740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2520bp ATGTTATTCAGGATTATCACAGGCATCCAGGCGCTGCGCACGACTCTCCT CTCTGGTGCAGCACCCAAGATTTCCTGCGGGCCTTGCTCCTCCTCCTCAA CTACGACGACACAGGCGATGGCTTGCGTAAGAAGAAGGCTCCACGGCCCG CCCATGCCCATGGTGATGATGGGAGTGCAGTTGCTGATCTTGGCGCTTGG CTCCGTCCCCTCGTTAGTCAATGCAGGTTTTGGCCTGGGAGACTACCGCA TCGACGTTGACTTTTTTGGCGGCGAGGGAGACCTCAGCCCTGCGCAGTAC AAGGCTTATCTTCAAGGAAAAATGCCCGCCACTCCCCGAGGCCGCAAGTA TCAATCCCCCCTTTGGTACCTGTACTCCCCGGGCTTGCCCAAAATTGAAC GTGAAGCACAGCTCGCGGAGTTGCGATACGTGGAGCAGCAGCTCGGAGTG AAGTTTTGGAAGGTCAAGGTAGACAACGAGAAAAAAGAGAGATTTTTGAA GAGCCTGGCGGAAGCCAGTGAGGCCCCTGGGGATAACAAGATTCCACGAC GGTTTAGGGAGGAGGCAGCCCGCAGCCCTGGGACGCCTTTCTTTTATAAC CTCAACACGGGCAAGAGCATCCAAGGCATGACCTCGTGCACCAACCTCAA GAAATGGGCGTTGGGGAAAGAGTATAGAGACGACCCATGGCAAGGTTTCA CCTCTCCGCAGTTTCAAGAATTGATGTCCAAGACAGGCGATGATGGCGAA AAAGATTACATGGATAAGTACAGCGACCACTCTTGGATTCTTCGCTATCG AAAAGAGCGCGACAATGCCCTGGCCGCACATAAGAAGCAGTACAATCGTC GAATATTTTGGTCGAGATTTGGCCTTGCCAAAGCTCCGCAAGGCGATGCA TTTGAACGCTTCATTGAAATCGACCGGCAAAAAGAGGCCGAGCAGGAGGT AAAGAAAGGATGGGTGAAGCCTTTACGCTCCCGCTCAGCCCCCGTGTCGG TAGGCTCGACGAAAAGTATTTTGGGGAGGAGCGAGAAAAAGAAGAAGAAG GAGGAGGATAGTAAGAGGGGTCGCGTAGAGAGGCGCCACAGCCCATCTCG CAAGTTGGCAGCAACCGAGGACACGACGATGCAAGCTCCAACACACGGTC CTCAAGATCTAGTAGAACGCGCAGAGCATGCCCTTGCCACCTTACAGCCG GAGTTGGCCGTCAAGTTCTACGAACGCGCTTTAGAAGCCACGCCGGACGC CACTGCCGTGATGGACGCCTTGGCAGAGCTTTTGATTGGTTTGGGAGAAA GCGAGCGGGCAAAAGGATTGCTGGAGAGGAGCGCCAAGTTGGCTCCAGAG AGTGGGCCAAGCAAATGGTTGTATCTGGGACAGATGTCAACAGGCTGGCA GGCTCTGCAGCATTTCAGCAAGGGTGCGGAATTGTTGAAAGCAGAACTGT CTGCACGAAGACGCGTCGGAATGGAGGCTGGAGAATACGTCGACAACGAG ACGTACGCGATCATGAATCAAGTGGTCAGCGCGCAATGCTCGATCGCTGA GCTTTACTTGACGGATTTGTGTTTTGAGGATGATGCAGAGGGTCGATGTC AGGTGGCATTGGATGAAGCGATGCGGATGGATGTGGGAGGCTCTCCGGAG GTAACTCAGGCATTGGCGAATTTACGATTGAGCCAAGAAAATGGAGAGGA GGCGGCAGATTTAATGCTTGAGACGGTGCGGAGATTAAACGCATGCCAGC AAGAGGATTACGAGGAGGATATTGAGGACGAAGGGGAGAAAGGGCGGGAG GGAGAAAGGGGCCTGCCCCTTCCCAATTTAATGTTTAGGGTCCAAACGGC AAAATTGCTTTTGGAGTGCCAGACGTTTAAGACAGGCAAAAAATGCGCGA AGCGGGCGATTAAAATCTTGGAGGCATGTAAATGTGAGGATGATGAGAAC ATGGAGGTGTGGTATTTATTGGGGGTTGCTTATTTCACACAGAGAAGGCC GGATTTGGTAATGGCGAGGGCGCACCTAGAGTATGCACAGGGGGAGATGA GAAAACGGCAGCAGCTGAATGGTGGAGCAGGAAAGAATGAAGCGGATTCT GACTATGGTGACCACTTGAGACTGGTGGAGGAGCAGTTGGCGATGGTTGT GGATGCGGAGGAGAAAGGGATTAAGAAGTGCGAAGAGGATGGGGCGGCGA TGGAGGACGATGGCGATGGTCATGAGGAGAGGGGGGTTATAAGTAATAGT AGCAGCAGCAGCAGCAGTGAGGACAGCTGTAGTGGCTCTGATGCGGACGA AGGGGGGGGGGCAATGGAAAATTGATGAGAGGGGTACTGAAGAAATTTAT ACACAAAATCAGATAGAAGCAGGAGTAAGGCCCTGGACAGAAAGGCCCCA TGGCTATCCCGCATCACAGTGACTATGCCACGCGATTAACTTACTCCCTT TCCTCAAAAAGGAAGCATGGAACCAATAGTCAAGACTCCCACCACAATTT TGATAAGCACAACGACCGAC back to topprotein sequence of NO03G03740.1 >NO03G03740.1-protein ID=NO03G03740.1-protein|Name=NO03G03740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=775bp MLFRIITGIQALRTTLLSGAAPKISCGPCSSSSTTTTQAMACVRRRLHGP PMPMVMMGVQLLILALGSVPSLVNAGFGLGDYRIDVDFFGGEGDLSPAQY KAYLQGKMPATPRGRKYQSPLWYLYSPGLPKIEREAQLAELRYVEQQLGV KFWKVKVDNEKKERFLKSLAEASEAPGDNKIPRRFREEAARSPGTPFFYN LNTGKSIQGMTSCTNLKKWALGKEYRDDPWQGFTSPQFQELMSKTGDDGE KDYMDKYSDHSWILRYRKERDNALAAHKKQYNRRIFWSRFGLAKAPQGDA FERFIEIDRQKEAEQEVKKGWVKPLRSRSAPVSVGSTKSILGRSEKKKKK EEDSKRGRVERRHSPSRKLAATEDTTMQAPTHGPQDLVERAEHALATLQP ELAVKFYERALEATPDATAVMDALAELLIGLGESERAKGLLERSAKLAPE SGPSKWLYLGQMSTGWQALQHFSKGAELLKAELSARRRVGMEAGEYVDNE TYAIMNQVVSAQCSIAELYLTDLCFEDDAEGRCQVALDEAMRMDVGGSPE VTQALANLRLSQENGEEAADLMLETVRRLNACQQEDYEEDIEDEGEKGRE GERGLPLPNLMFRVQTAKLLLECQTFKTGKKCAKRAIKILEACKCEDDEN MEVWYLLGVAYFTQRRPDLVMARAHLEYAQGEMRKRQQLNGGAGKNEADS DYGDHLRLVEEQLAMVVDAEEKGIKKCEEDGAAMEDDGDGHEERGVISNS SSSSSSEDSCSGSDADEGGGAMEN* back to topmRNA from alignment at chr3:1105224..1108800+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03740.1 ID=NO03G03740.1|Name=NO03G03740.1|organism=Nannochloropsis oceanica|type=mRNA|length=3577bp|location=Sequence derived from alignment at chr3:1105224..1108800+ (Nannochloropsis oceanica) ATGTTATTCAGGATTATCACAGGCATCCAGGCGCTGCGCACGACTCTCCT
CTCTGGTGCAGCACCCAAGATTTCCTGCGGGCCTTGCTCCTCCTCCTCAA
CTACGACGACACAGGCGATGGCTTGCGTAAGAAGAAGGCTCCACGGCCCG
CCCATGCCCATGGTGATGATGGGAGTGCAGTTGCTGATCTTGGCGCTTGG
CTCCGTCCCCTCGTTAGTCAATGCAGGTTTTGGCCTGGGAGACTACCGCA
TCGACGTTGACTTTTTTGGCGGCGAGGGAGACCTCAGCCCTGCGCAGTAC
GTACACAGGGATAATAATGTGGATGGGTGTGTTCGGTGGGGTATATGCGT
AGATCTGCTTATGTGGATGATTGAAAAGGGGAGGCAGTGCGGCATGTGCG
CTCTCTCCGCCTTGCTTCTCCCCACTATCGCGTCCCTCCTCCAGAGACAA
ACACTCTTACTCTCGTCTCCCCTCTCCCTTCATTCCAGGTACAAGGCTTA
TCTTCAAGGAAAAATGCCCGCCACTCCCCGAGGCCGCAAGTATCAATCCC
CCCTTTGGTACCTGTACTCCCCGGGCTTGCCCAAAATTGAACGTGAAGCA
CAGCTCGCGGAGTTGCGATACGTGGAGCAGCAGCTCGGAGTGAAGTTTTG
GAAGGTCAAGGTAGACAACGAGAAAAAAGAGAGATTTTTGAAGAGCCTGG
CGGAAGCCAGTGAGGCCCCTGGGGATAACAAGATTCCACGACGGTTTAGG
GAGGAGGCAGCCCGCAGCCCTGGGACGCCTTTCTTTTATAACCTGTACGT
ACAGGGGATATTTGTGCACGTGCGTGCATGTGCATGTGTGTTTTTATAAT
ATGTTTTGTGATACCCTTGTTTAGAGCGTGCTTTGGTGCTATCTTCTTGC
CGAATACAGTTCCTGTTTCACTCCTTCTCTTCCTCCACTCTCCCACAGCA
ACACGGGCAAGAGCATCCAAGGCATGACCTCGTGCACCAACCTCAAGAAA
TGGGCGTTGGGGAAAGAGTATAGAGACGACCCATGGCAAGGTTTCACCTC
TCCGCAGTTTCAAGAATTGATGTCCAAGACAGGCGATGATGGCGAAAAAG
ATTGTAAGTCAGCCTTCCCCCCTCCCCCCCCCCCTCTTCTACCTCTCCTA
ATTTCCCAAATAATATCTAGACGATACAAGCAAGAGCATGAAATAAATTT
GGCTCGTGCCATTCTTTGCTTCATCTGTTTTTCTCATCTGCTATTACCCC
AGAAGGTATACACATGCCTCAATAACGACACTGATTATCCCTCCATCCCG
CGCTCCCTCATTATCTCTTCACCAGACATGGATAAGTACAGCGACCACTC
TTGGATTCTTCGCTATCGAAAAGAGCGCGACAATGCCCTGGCCGCACATA
AGAAGCAGTACAATCGTCGAATATTTTGGTCGAGATTTGGCCTTGCCAAA
GCTCCGCAAGGCGATGCATTTGAACGCTTCATTGAAATCGACCGGCAAAA
AGAGGCCGAGCAGGAGGTAAAGAAAGGATGGGTGAAGCCTTTACGCTCCC
GCTCAGCCCCCGTGTCGGTAGGCTCGACGAAAAGTATTTTGGGGAGGAGC
GAGAAAAAGAAGAAGAAGGAGGAGGATAGTAAGAGGGGTCGCGTAGAGAG
GCGGTGAGGGAGGATATTGGAAGGCGAGACACTGCCTGAGAGTGTGTGTG
GCACACTAGCCATTAAGAGATAAATCGTGTAAAAATCAAAAACACACGAA
ACATTTTCAATAAAAGAAAAAGAAGTAAGTCAGCAGCAACCAGACAAAGC
AGTGAAAATCAACCTCCCCACCTCTCGCGATTTATCTTCCGTGGCTCTCA
TCCCTTTCCTTTCACCTCCGCATTTTCGTTGGCCGCCGGGCTGACTGCTG
CAGACCTGTATCCACTATATGCGTCACACCTCGCTTGAGTGCTTTAAATT
AACCTTACAACTTTCTCACGCCTCATGCCCCACTATCCCAAGCCACAGCC
CATCTCGCAAGTTGGCAGCAACCGAGGACACGACGATGCAAGCTCCAACA
CACGGTCCTCAAGATCTAGTAGAACGCGCAGAGCATGCCCTTGCCACCTT
ACAGCCGGAGTTGGCCGTCAAGTACGTCAAAACCGATGCCTGGAAATAAA
AATAAAAATATTTATATATTGCATATATATGTATATATATTGCCCAGCGC
TGCCCCATCCACTAATGCGATGTTGGGCTCACTATTGCTTCCCTTCCCAC
TCATGACCGATGGCCGACCAGGTTCTACGAACGCGCTTTAGAAGCCACGC
CGGACGCCACTGCCGTGATGGACGCCTTGGCAGAGCTTTTGATTGGTTTG
GGAGAAAGCGAGCGGGCAAAAGGATTGCTGGAGAGGAGCGCCAAGTTGGC
TCCAGAGAGTGGGCCAAGCAAATGGTTGTATCTGGGACAGATGTCAACAG
GCTGGCAGGCTCTGCAGCATTTCAGCAAGGGTGCGGAATTGTTGAAAGCA
GAACTGTCTGCACGAAGACGCGTCGGAATGGAGGCTGGAGAATACGTCGA
CAACGAGACGTACGCGATCATGAATCAAGTGGTCAGCGCGCAATGCTCGA
TCGCTGAGCTTTACTTGACGGATTTGTGTTTTGAGGATGATGCAGAGGGT
CGATGTCAGGTGGCATTGGATGAAGCGATGCGGATGGATGTGGGAGGCTC
TCCGGAGGTAACTCAGGCATTGGCGAATTTACGATTGAGCCAAGAAAATG
GAGAGGAGGCGGCAGATTTAATGCTTGAGACGGTGCGGAGATTAAACGCA
TGCCAGCAAGAGGATTACGAGGAGGATATTGAGGACGAAGGGGAGAAAGG
GCGGGAGGGAGAAAGGGGCCTGCCCCTTCCCAATTTAATGTTTAGGGTCC
AAACGGCAAAATTGCTTTTGGAGTGCCAGACGTTTAAGACAGGCAAAAAA
TGCGCGAAGCGGGCGATTAAAATCTTGGAGGCATGTAAATGTGAGGATGA
TGAGAACATGGAGGTGTGGTATTTATTGGGGGTTGCTTATTTCACACAGA
GAAGGCCGGATTTGGTAATGGCGAGGGCGCACCTAGAGTATGCACAGGGG
GAGATGAGAAAACGGCAGCAGCTGAATGGTGGAGCAGGAAAGAATGAAGC
GGATTCTGACTATGGTGACCACTTGAGACTGGTGGAGGAGCAGTTGGCGA
TGGTTGTGGATGCGGAGGAGAAAGGGATTAAGAAGTGCGAAGAGGATGGG
GCGGCGATGGAGGACGATGGCGATGGTCATGAGGAGAGGGGGGTTATAAG
TAATAGTAGCAGCAGCAGCAGCAGTGAGGACAGCTGTAGTGGCTCTGATG
CGGACGAAGGGGGGGGGGCAATGGAAAATTGATGAGAGGGGTACTGAAGA
AATTTATACACAAAATCAGATAGAAGCAGGAGTAAGGCCCTGGACAGAAA
GGCCCCATGGCTATCCCGCATCACAGTGACTATGCCACGCGATTAACTTA
CTCCCTTTCCTCAAAAAGGAAGCATGGAACCAATAGTCAAGACTCCCACC
ACAATTTTGATAAGCACAACGACCGAC back to topCoding sequence (CDS) from alignment at chr3:1105224..1108800+ >NO03G03740.1 ID=NO03G03740.1|Name=NO03G03740.1|organism=Nannochloropsis oceanica|type=CDS|length=2325bp|location=Sequence derived from alignment at chr3:1105224..1108800+ (Nannochloropsis oceanica) ATGTTATTCAGGATTATCACAGGCATCCAGGCGCTGCGCACGACTCTCCT CTCTGGTGCAGCACCCAAGATTTCCTGCGGGCCTTGCTCCTCCTCCTCAA CTACGACGACACAGGCGATGGCTTGCGTAAGAAGAAGGCTCCACGGCCCG CCCATGCCCATGGTGATGATGGGAGTGCAGTTGCTGATCTTGGCGCTTGG CTCCGTCCCCTCGTTAGTCAATGCAGGTTTTGGCCTGGGAGACTACCGCA TCGACGTTGACTTTTTTGGCGGCGAGGGAGACCTCAGCCCTGCGCAGTAC AAGGCTTATCTTCAAGGAAAAATGCCCGCCACTCCCCGAGGCCGCAAGTA TCAATCCCCCCTTTGGTACCTGTACTCCCCGGGCTTGCCCAAAATTGAAC GTGAAGCACAGCTCGCGGAGTTGCGATACGTGGAGCAGCAGCTCGGAGTG AAGTTTTGGAAGGTCAAGGTAGACAACGAGAAAAAAGAGAGATTTTTGAA GAGCCTGGCGGAAGCCAGTGAGGCCCCTGGGGATAACAAGATTCCACGAC GGTTTAGGGAGGAGGCAGCCCGCAGCCCTGGGACGCCTTTCTTTTATAAC CTCAACACGGGCAAGAGCATCCAAGGCATGACCTCGTGCACCAACCTCAA GAAATGGGCGTTGGGGAAAGAGTATAGAGACGACCCATGGCAAGGTTTCA CCTCTCCGCAGTTTCAAGAATTGATGTCCAAGACAGGCGATGATGGCGAA AAAGATTACATGGATAAGTACAGCGACCACTCTTGGATTCTTCGCTATCG AAAAGAGCGCGACAATGCCCTGGCCGCACATAAGAAGCAGTACAATCGTC GAATATTTTGGTCGAGATTTGGCCTTGCCAAAGCTCCGCAAGGCGATGCA TTTGAACGCTTCATTGAAATCGACCGGCAAAAAGAGGCCGAGCAGGAGGT AAAGAAAGGATGGGTGAAGCCTTTACGCTCCCGCTCAGCCCCCGTGTCGG TAGGCTCGACGAAAAGTATTTTGGGGAGGAGCGAGAAAAAGAAGAAGAAG GAGGAGGATAGTAAGAGGGGTCGCGTAGAGAGGCGCCACAGCCCATCTCG CAAGTTGGCAGCAACCGAGGACACGACGATGCAAGCTCCAACACACGGTC CTCAAGATCTAGTAGAACGCGCAGAGCATGCCCTTGCCACCTTACAGCCG GAGTTGGCCGTCAAGTTCTACGAACGCGCTTTAGAAGCCACGCCGGACGC CACTGCCGTGATGGACGCCTTGGCAGAGCTTTTGATTGGTTTGGGAGAAA GCGAGCGGGCAAAAGGATTGCTGGAGAGGAGCGCCAAGTTGGCTCCAGAG AGTGGGCCAAGCAAATGGTTGTATCTGGGACAGATGTCAACAGGCTGGCA GGCTCTGCAGCATTTCAGCAAGGGTGCGGAATTGTTGAAAGCAGAACTGT CTGCACGAAGACGCGTCGGAATGGAGGCTGGAGAATACGTCGACAACGAG ACGTACGCGATCATGAATCAAGTGGTCAGCGCGCAATGCTCGATCGCTGA GCTTTACTTGACGGATTTGTGTTTTGAGGATGATGCAGAGGGTCGATGTC AGGTGGCATTGGATGAAGCGATGCGGATGGATGTGGGAGGCTCTCCGGAG GTAACTCAGGCATTGGCGAATTTACGATTGAGCCAAGAAAATGGAGAGGA GGCGGCAGATTTAATGCTTGAGACGGTGCGGAGATTAAACGCATGCCAGC AAGAGGATTACGAGGAGGATATTGAGGACGAAGGGGAGAAAGGGCGGGAG GGAGAAAGGGGCCTGCCCCTTCCCAATTTAATGTTTAGGGTCCAAACGGC AAAATTGCTTTTGGAGTGCCAGACGTTTAAGACAGGCAAAAAATGCGCGA AGCGGGCGATTAAAATCTTGGAGGCATGTAAATGTGAGGATGATGAGAAC ATGGAGGTGTGGTATTTATTGGGGGTTGCTTATTTCACACAGAGAAGGCC GGATTTGGTAATGGCGAGGGCGCACCTAGAGTATGCACAGGGGGAGATGA GAAAACGGCAGCAGCTGAATGGTGGAGCAGGAAAGAATGAAGCGGATTCT GACTATGGTGACCACTTGAGACTGGTGGAGGAGCAGTTGGCGATGGTTGT GGATGCGGAGGAGAAAGGGATTAAGAAGTGCGAAGAGGATGGGGCGGCGA TGGAGGACGATGGCGATGGTCATGAGGAGAGGGGGGTTATAAGTAATAGT AGCAGCAGCAGCAGCAGTGAGGACAGCTGTAGTGGCTCTGATGCGGACGA AGGGGGGGGGGCAATGGAAAATTGA back to top
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