NO03G03370.1, NO03G03370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03370.1
Unique NameNO03G03370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length624
Alignment locationchr3:1006930..1007733 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1006930..1007733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03370.1 vs.
Match: EWM20106.1 (hypothetical protein Naga_101772g1 [Nannochloropsis gaditana])

HSP 1 Score: 115.5 bits (288), Expect = 1.400e-22
Identity = 75/159 (47.17%), Postives = 98/159 (61.64%), Query Frame = 0 
Query:    1 MAWRGGAFPGPGKGRALRGAFLSTTHTGTGNTGGSGSMRLLRGSFDINALAATVGVTIAVITSTAVAVHHYDEN-MSALKLKAA-------------VAQAKAEVARVKGERELAEQMWKNEVERHKREIQIAYTQDYTPYQAAISKGNDRRKGTGGPQ 146
            MAWR GA  G GKGR LRGA LSTTHTGTG     GS   ++    +    A +G+  AV  STAVAVHH D+  +  ++ KAA             + QAKA+VARV+GER L+E+  + EVER+K ++++  TQD+ PYQAAI +   +R G GGPQ
Sbjct:    1 MAWRRGAQSGRGKGRGLRGASLSTTHTGTGTGSEGGSDTTIQM---VTVTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKAATEIKRIHDKAATEIVQAKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAIRENQTKRGGGGGPQ 156
The following BLAST results are available for this feature:
BLAST of NO03G03370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20106.11.400e-2247.17hypothetical protein Naga_101772g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03370NO03G03370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03370.1NO03G03370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03370.1.cds1NO03G03370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03370.1.cds2NO03G03370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03370.1 ID=NO03G03370.1|Name=NO03G03370.1|organism=Nannochloropsis oceanica|type=mRNA|length=624bp
ATGGCATGGCGAGGGGGCGCGTTTCCCGGTCCAGGGAAGGGACGCGCGCT
GCGGGGGGCATTCCTGTCGACAACGCACACGGGTACTGGGAATACAGGAG
GCTCTGGAAGCATGCGGTTGCTCCGAGGTTCCTTTGATATCAACGCATTG
GCAGCTACTGTAGGTGTGACGATAGCGGTTATCACCTCTACCGCTGTGGC
CGTCCATCATTACGATGAGAACATGTCGGCGCTCAAACTAAAAGCAGCGG
TCGCTCAAGCGAAAGCAGAGGTCGCGCGGGTTAAGGGCGAGCGGGAGTTG
GCAGAACAAATGTGGAAGAATGAGGTGGAGCGCCACAAACGAGAAATACA
AATTGCATATACACAAGATTACACGCCTTATCAGGCGGCGATTTCAAAGG
GAAACGATAGGAGGAAAGGGACCGGAGGACCGCAAAAGGATGAGGAGAAG
AAAGGGTAGCTTCCGGTAGTCACTTGCGTGGATGTGCATTGAAGACCATG
TAAAAGACGCATTCAAAGACACTGTAGAGTAGCCAGGGTAATATGGTGGA
CGTGGGACGGTGACTTGAGGGGATGGGGCGCGTACACGGTCAACTCAACA
ACGAGCACTCCGTAAACTTCCAAC
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protein sequence of NO03G03370.1

>NO03G03370.1-protein ID=NO03G03370.1-protein|Name=NO03G03370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MAWRGGAFPGPGKGRALRGAFLSTTHTGTGNTGGSGSMRLLRGSFDINAL
AATVGVTIAVITSTAVAVHHYDENMSALKLKAAVAQAKAEVARVKGEREL
AEQMWKNEVERHKREIQIAYTQDYTPYQAAISKGNDRRKGTGGPQKDEEK
KG*
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mRNA from alignment at chr3:1006930..1007733+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03370.1 ID=NO03G03370.1|Name=NO03G03370.1|organism=Nannochloropsis oceanica|type=mRNA|length=804bp|location=Sequence derived from alignment at chr3:1006930..1007733+ (Nannochloropsis oceanica)
ATGGCATGGCGAGGGGGCGCGTTTCCCGGTCCAGGTAGGGTCTTGTGAGG
GTTTGATGTTAGGGTTGTAGGCGGAAGGAGTGGGGGAACTGCCCGTGGCT
TGTTTGATGACAGATTGTCCGGATGTCTGTCTTGTTTGAGAGTGAGTCTT
TGTTGTGCGGGCAAGGGGCCGCGCCAAGGTGTTCACGCACAAGCACATTC
ATACTCGCCCACAGGGAAGGGACGCGCGCTGCGGGGGGCATTCCTGTCGA
CAACGCACACGGGTACTGGGAATACAGGAGGCTCTGGAAGCATGCGGTTG
CTCCGAGGTTCCTTTGATATCAACGCATTGGCAGCTACTGTAGGTGTGAC
GATAGCGGTTATCACCTCTACCGCTGTGGCCGTCCATCATTACGATGAGA
ACATGTCGGCGCTCAAACTAAAAGCAGCGGTCGCTCAAGCGAAAGCAGAG
GTCGCGCGGGTTAAGGGCGAGCGGGAGTTGGCAGAACAAATGTGGAAGAA
TGAGGTGGAGCGCCACAAACGAGAAATACAAATTGCATATACACAAGATT
ACACGCCTTATCAGGCGGCGATTTCAAAGGGAAACGATAGGAGGAAAGGG
ACCGGAGGACCGCAAAAGGATGAGGAGAAGAAAGGGTAGCTTCCGGTAGT
CACTTGCGTGGATGTGCATTGAAGACCATGTAAAAGACGCATTCAAAGAC
ACTGTAGAGTAGCCAGGGTAATATGGTGGACGTGGGACGGTGACTTGAGG
GGATGGGGCGCGTACACGGTCAACTCAACAACGAGCACTCCGTAAACTTC
CAAC
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Coding sequence (CDS) from alignment at chr3:1006930..1007733+

>NO03G03370.1 ID=NO03G03370.1|Name=NO03G03370.1|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at chr3:1006930..1007733+ (Nannochloropsis oceanica)
ATGGCATGGCGAGGGGGCGCGTTTCCCGGTCCAGGGAAGGGACGCGCGCT
GCGGGGGGCATTCCTGTCGACAACGCACACGGGTACTGGGAATACAGGAG
GCTCTGGAAGCATGCGGTTGCTCCGAGGTTCCTTTGATATCAACGCATTG
GCAGCTACTGTAGGTGTGACGATAGCGGTTATCACCTCTACCGCTGTGGC
CGTCCATCATTACGATGAGAACATGTCGGCGCTCAAACTAAAAGCAGCGG
TCGCTCAAGCGAAAGCAGAGGTCGCGCGGGTTAAGGGCGAGCGGGAGTTG
GCAGAACAAATGTGGAAGAATGAGGTGGAGCGCCACAAACGAGAAATACA
AATTGCATATACACAAGATTACACGCCTTATCAGGCGGCGATTTCAAAGG
GAAACGATAGGAGGAAAGGGACCGGAGGACCGCAAAAGGATGAGGAGAAG
AAAGGGTAG
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Synonyms
Publications