NO03G03100.1, NO03G03100.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G03100.1
Unique Name	NO03G03100.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2403
Alignment location	chr3:926062..929173 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:926062..929173 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G03100.1 vs.
Match: EWM29761.1 (hypothetical protein Naga_100022g36 [Nannochloropsis gaditana])

HSP 1 Score: 429.5 bits (1103), Expect = 1.400e-116
Identity = 245/394 (62.18%), Postives = 290/394 (73.60%), Query Frame = 0

Query:   83 VTLATILLALLILS---QGGQSSPADVSDPSPIARKRAPAAGKRPKGAKPLSRPAGRRPT------LPVPERRKDEVKIGGSKTAAPAAAQVEVEEVEEGLLEEAMRERSINKYFSADPLWTGQLIASGMAWFLVLTAASLPADVAGERPVLMILTVRHAFGLAADVRRVLREAAEGEVDRRKIRKLARGLTRVPGAPSYLLYSAALLTWPATNSPKGVVKALGPLLLREFYTALAAGLDMLQILGVSSEAASGPAAAARCGPRRFMPGSLSTISLVFEASLGLSLVVALLRSRNEGGMLLRRCLATLLYANFLYNRVGHLPGLKEALGRRSVGGSVAALLKPLFKDLEPTTRQLTAIGRASLAELDTVPGVGEKVRSTLRLLGFLEDEQGVTE 468
            V  A   LALL+L    +G  SSP   +   P   +R     +R +    +S   GR+          +  RR D+ +     +AA A    E    EE LLEEA+RERSINKYF+ADPLWTGQL+AS +AW LVL AASLP D+  +RP+L +L  RHA GLAADVRRVL  AA+G V+RR+I +L  GLT VPGAP+YLLY+AALL WPAT+SPKGVV  L PLLLREF+TALAA LD+LQILGVSSEAASGP +AARCGPRR MPGSLSTISL+ EASLGLSL VALLR RN+GG LLRRCLA LL+ANFLYNR+GH+ GLKEA+ RRSVGGS  ALLKP++KD+EP TRQLTA+ RA+LA LDT+PG GE+VRS L+LLGFLED+    E
Sbjct:   13 VMRAAFFLALLLLQDLGEGHPSSPVGKALDQPFLARRREIRVQRQR----VSNSGGRQTRGKTHGDAKLHRRRIDQGQKERESSAAAAMPDQEPRVEEEDLLEEAIRERSINKYFAADPLWTGQLVASALAWALVLAAASLPPDIGRDRPILRVLAARHALGLAADVRRVLLVAADGAVNRRRIHELVGGLTSVPGAPAYLLYTAALLAWPATDSPKGVVNGLAPLLLREFFTALAAVLDLLQILGVSSEAASGPGSAARCGPRRPMPGSLSTISLLLEASLGLSLAVALLRCRNQGGTLLRRCLAALLFANFLYNRIGHISGLKEAICRRSVGGSALALLKPIWKDMEPATRQLTAVSRATLARLDTIPG-GERVRSMLQLLGFLEDDAETKE 401

The following BLAST results are available for this feature:

BLAST of NO03G03100.1 vs.

BLAST of NO03G03100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29761.1	1.400e-116	62.18	hypothetical protein Naga_100022g36 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G03100	NO03G03100	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G03100.1	NO03G03100.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G03100.1.cds1	NO03G03100.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G03100.1.cds2	NO03G03100.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G03100.1.cds3	NO03G03100.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G03100.1.cds4	NO03G03100.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G03100.1.cds5	NO03G03100.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:926062..929173-
coding sequence from alignment at chr3:926062..929173-

mRNA sequence

>NO03G03100.1 ID=NO03G03100.1|Name=NO03G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2403bp
CTCACTGACGTATCTGCCGTTCTCTTGATTTGCTTATTTTCATGCCTTTG
GTTTGATGTTCGTCTACTACTGTACATCTGCTGCCCCTTGCGCGCCCTCA
CGCAATCCCTGATATGATGCGACCTTCCCACATCCCGCAACCCAACCAGC
CCCACTCTCTCTGCTTGCCAATCAAGTACACAAATTATCTGCATCTGCAA
AGTACTGCAGCCTCTACGTATTGTCCGCACCCATGATCGACTCCTCGTGA
TCCAATCCTCCAACGTCTGCATGGTGGCCAACCAAAGCTGTCAGTACAGA
CGCATCCGCCCACTTGGTACAGGCCTCTAAACCCTCAACTCAAGCAAGCG
TATTGTATTTCTCTCTCCCTCTTCTCCTCCATTTCTCCTCACCATTCATG
GTCCCCTCCTCCTTCTCCCACTACCGCTCCCTTAATTGCTCCCAGAGTTT
TTTGCCAAGTAGATGAGACGAATGACCCCAAAGAAGATAGCCGTGTACCC
CGCATGGGTAAGCGCAGCGCTGCTGCCACCCCGTTTACGACGTGGTGCGC
GGTTGCCTTCCCCCGACGAGCTGCGGATGCGATCAATGACAAACATGGTG
GCTGTGTGCTTAGCCTCCTGCCTATCTGTGCGTCTGAGTGCTTGTGCTGG
CCTCTGTGCCGACCTTCTGTGCAAGGTAGAAAAGGGGAGAAAAGAAATAG
AATAAGTACATGCGTGCTGGTAGGTGCGTGGTGCAATGCTGCGATTAGGT
GATGCGCTGGCTGAGTCGTGGGTCGAGCATGCGGTTGAGTGGGGATGAAT
ATCTGCCCTTGACCTTGCCGCAGGCCAACCCTTCCTGAGACTCCAAGCAA
CTGCAGCAGCAGGCGGGAACAGTTAGCCACGACACAATAAGCAATGAAAT
GACGCATGTGTTTGTATCTGTGTAGGTGGAAATACCAAATTATGCCCGTG
CGTGAAAAAGGGGGGGAAAAACGGTACCGGCTCCGATGGCCGCCATCCCA
TCGCCTCAATCATTTCTTCCATAGCCTGGCGCTCACAGACAGCTCTCCAG
GACACGACCTGACCCCTCCCAACCCATGTCCGTCACCATATAGGGCATTC
TCAGTTAGCATGCGGATGGTGGCATACTTCGACGTGCACAGGCGCTGGCT
TGTCACACTGGCAACCATTTTACTCGCCCTCCTCATCCTTTCTCAGGGAG
GGCAATCGTCCCCTGCGGACGTCTCGGACCCTTCTCCGATCGCACGAAAG
CGGGCGCCAGCAGCAGGAAAGCGGCCGAAAGGTGCCAAGCCACTCAGTAG
ACCAGCAGGGCGTAGGCCAACCTTACCCGTGCCTGAGAGGCGGAAGGACG
AGGTCAAGATCGGAGGGAGCAAGACGGCGGCGCCCGCAGCGGCCCAGGTG
GAGGTAGAGGAAGTTGAGGAAGGGCTGCTTGAGGAGGCCATGCGAGAGCG
GTCAATCAACAAATATTTTTCCGCGGACCCTTTGTGGACGGGACAACTAA
TCGCGAGCGGGATGGCGTGGTTTTTGGTGCTCACGGCAGCTTCACTACCA
GCAGACGTGGCGGGGGAGAGGCCAGTGCTAATGATCCTGACAGTGCGTCA
TGCCTTTGGCCTGGCTGCGGATGTGCGCCGGGTGTTGAGAGAAGCGGCGG
AAGGAGAGGTGGACCGAAGGAAGATTCGCAAGCTCGCCCGCGGCCTAACC
CGTGTCCCAGGCGCCCCCTCCTACCTCCTCTATTCCGCCGCCCTCCTCAC
TTGGCCTGCGACAAACTCACCCAAAGGAGTAGTCAAAGCCCTCGGCCCTC
TTCTCCTACGTGAGTTTTATACGGCATTGGCAGCAGGACTGGACATGCTG
CAGATCTTGGGAGTGTCTTCCGAAGCGGCCTCTGGCCCCGCGGCGGCTGC
GAGGTGTGGGCCGCGACGTTTCATGCCCGGCTCGCTTTCAACCATCAGTT
TGGTGTTCGAGGCGTCGTTGGGACTCTCCTTGGTGGTGGCACTCTTGCGG
AGTCGGAACGAAGGCGGGATGCTGCTACGACGGTGTCTGGCCACCCTGCT
CTATGCCAACTTCCTTTACAACCGCGTCGGTCATCTTCCAGGGCTTAAGG
AAGCTTTAGGTCGACGCTCCGTAGGCGGCTCAGTCGCTGCCTTGCTCAAG
CCCTTATTCAAGGACCTGGAGCCAACCACCCGGCAACTCACTGCCATTGG
CCGCGCTTCACTCGCCGAGCTTGACACGGTGCCAGGGGTGGGGGAGAAGG
TCAGGTCGACGTTGCGGCTCTTGGGGTTCTTGGAAGACGAGCAAGGCGTA
ACAGAGGAAGGTTCGCAGGGGAATGGGGGTCTCAGTTGAGGAAGACAGAA
AACGCAGACGCAGAGAGCAGTGTACAAAAGAAAAAAACACAAAGTACTCA
TTT

protein sequence of NO03G03100.1

>NO03G03100.1-protein ID=NO03G03100.1-protein|Name=NO03G03100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MCLYLCRWKYQIMPVREKGGEKRYRLRWPPSHRLNHFFHSLALTDSSPGH
DLTPPNPCPSPYRAFSVSMRMVAYFDVHRRWLVTLATILLALLILSQGGQ
SSPADVSDPSPIARKRAPAAGKRPKGAKPLSRPAGRRPTLPVPERRKDEV
KIGGSKTAAPAAAQVEVEEVEEGLLEEAMRERSINKYFSADPLWTGQLIA
SGMAWFLVLTAASLPADVAGERPVLMILTVRHAFGLAADVRRVLREAAEG
EVDRRKIRKLARGLTRVPGAPSYLLYSAALLTWPATNSPKGVVKALGPLL
LREFYTALAAGLDMLQILGVSSEAASGPAAAARCGPRRFMPGSLSTISLV
FEASLGLSLVVALLRSRNEGGMLLRRCLATLLYANFLYNRVGHLPGLKEA
LGRRSVGGSVAALLKPLFKDLEPTTRQLTAIGRASLAELDTVPGVGEKVR
STLRLLGFLEDEQGVTEEGSQGNGGLS*

mRNA from alignment at chr3:926062..929173-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G03100.1 ID=NO03G03100.1|Name=NO03G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3112bp|location=Sequence derived from alignment at chr3:926062..929173- (Nannochloropsis oceanica)
CTCACTGACGTATCTGCCGTTCTCTTGATTTGCTTATTTTCATGCCTTTG
GTTTGATGTTCGTCTACTACTGTACATCTGCTGCCCCTTGCGCGCCCTCA
CGCAATCCCTGATATGATGCGACCTTCCCACATCCCGCAACCCAACCAGC
CCCACTCTCTCTGCTTGCCAATCAAGTACACAAATTATCTGCATCTGCAA
AGTACTGCAGCCTCTACGTATTGTCCGCACCCATGATCGACTCCTCGTGA
TCCAATCCTCCAACGTCTGCATGGTGGCCAACCAAAGCTGTCAGTACAGA
CGCATCCGCCCACTTGGTACAGGCCTCTAAACCCTCAACTCAAGCAAGCG
TATTGTATTTCTCTCTCCCTCTTCTCCTCCATTTCTCCTCACCATTCATG
GTCCCCTCCTCCTTCTCCCACTACCGCTCCCTTAATTGCTCCCAGAGTTT
TTTGCCAAGTAGATGAGACGAATGACCCCAAAGAAGATAGCCGTGTACCC
CGCATGGGTAAGCGCAGCGCTGCTGCCACCCCGTTTACGACGTGGTGCGC
GGTTGCCTTCCCCCGACGAGCTGCGGATGCGATCAATGACAAACATGGTG
GCTGTGTGCTTAGCCTCCTGCCTATCTGTGCGTCTGAGTGCTTGTGCTGG
CCTCTGTGCCGACCTTCTGTGCAAGGTAGAAAAGGGGAGAAAAGAAATAG
AATAAGTACATGCGTGCTGGTAGGTGCGTGGTGCAATGCTGCGATTAGGT
GATGCGCTGGCTGAGTCGTGGGTCGAGCATGCGGTTGAGTGGGGATGAAT
ATCTGCCCTTGACCTTGCCGCAGGCCAACCCTTCCTGAGACTCCAAGCAA
CTGCAGCAGCAGGCGGGAACAGTTAGCCACGACACAATAAGCAATGAAAT
GACGCATGTGTTTGTATCTGTGTAGGTGGAAATACCAAATTATGCCCGTG
CGTGAAAAAGGGGGGGAAAAACGGTACCGGCTCCGATGGCCGCCATCCCA
TCGCCTCAATCATTTCTTCCATAGCCTGGCGCTCACAGACAGCTCTCCAG
GACACGACCTGACCCCTCCCAACCCATGTCCGTCACCATATAGGGCATTC
TCAGTTAGCATGCGGATGGTGGCATACTTCGACGTGCACAGGCGCTGGCT
TGTCACACTGGCAACCATTTTACTCGCCCTCCTCATCCTTTCTCAGGGAG
GGCAATCGTCCCCTGCGGACGTCTCGGACCCTTCTCCGATCGCACGAAAG
CGGGCGCCAGCAGCAGGAAAGCGGCCGAAAGGTGCCAAGCCACTCAGTAG
ACCAGCAGGGCGTAGGCCAACCTTACCCGTGCCTGAGAGGCGGAAGGACG
AGGTCAAGATCGGAGGGAGCAAGACGGCGGCGCCCGCAGCGGCCCAGGTG
GAGGTAGAGGAAGTTGAGGAAGGGCTGCTTGAGGAGGCCATGCGAGAGCG
GTCAATCAACAAATATTTTTCCGCGGACCCTTTGTGGACGGGACAACTAA
TCGCGAGCGGGATGGCGTGGTTTTTGGTGGTACGTGGAGATACTGAGGTG
GGCTTTTGAACCTGAGGAAAACTGCGTGCACGGTGATCATGTATTTGCTC
ACATAGACGACTTTGTGAATGTGGAAATCAACATGTGTTTAAAGGTTAAT
ACCGCGCGGCTGTAGATATGATGAATATTTACCGTTTCCCACAGAAAATC
ATCACCTGTGAAGTCAGAAATCGTCTGTGGAGGCGCAATTTTTCTGCCCC
GCGTTTACCAGACCAACAAGCACGCGTTTGAGGCCTGCCTGCAAGAGTAA
CGCCACACTCTGCCATTCAAGAATGATTTCATTTTCTCAAGATCCTCGCC
AACCTCCTTTTACATGATCACTTTTTAATCCGCGTCCCTACCAACCCACA
ACTAGCTCACGGCAGCTTCACTACCAGCAGACGTGGCGGGGGAGAGGCCA
GTGCTAATGATCCTGACAGTGCGTCATGCCTTTGGCCTGGCTGCGGATGT
GCGCCGGGTGTTGAGAGAAGCGGCGGAAGGAGAGGTGGACCGAAGGAAGA
TTCGCAAGGTAAGAGAGAGGGATTGATGGAGAGAGGGCGATGGAGAAACT
ACAAGTCTTGAATACACATGGGTAATATTTGTCATTTCTTTTCTATTTAA
TAATTTTGTTTTCATTTTAGCTTACAGACATTTCTCTCTCCCGACCCGAA
AATCAGCTCGCCCGCGGCCTAACCCGTGTCCCAGGCGCCCCCTCCTACCT
CCTCTATTCCGCCGCCCTCCTCACTTGGCCTGCGACAAACTCACCCAAAG
GAGTAGTCAAAGCCCTCGGCCCTCTTCTCCTACGTGAGTTTTATACGGCA
TTGGCAGCAGGACTGGACATGCTGCAGATCTTGGGAGTGTCTTCCGAAGC
GGCCTCTGGCCCCGCGGCGGCTGCGAGGTGTGGGCCGCGACGTTTCATGC
CCGGCTCGCTTTCAACCATCAGTTTGGTGTTCGAGGTAAGCTTTTTTTAG
TTCCTTTTTGCACGCATATTTTGTTGTCACTGCGAGTGATTTCACGTCAG
CCTTGGTCCTCATAGGCGTCGTTGGGACTCTCCTTGGTGGTGGCACTCTT
GCGGAGTCGGAACGAAGGCGGGATGCTGCTACGACGGTGTCTGGCCACCC
TGCTCTATGCCAACTTCCTTTACAACCGCGTCGGTCATCTTCCAGGGCTT
AAGGTATGCGTAACATGTTTGTCCCCATCCGTGGGTCCGCGCTCTCACTT
TCTGATGAGAGAATCACTCCCCTTCTCTTTGCCACCCAATTCACATCCTA
TCCAACAGGAAGCTTTAGGTCGACGCTCCGTAGGCGGCTCAGTCGCTGCC
TTGCTCAAGCCCTTATTCAAGGACCTGGAGCCAACCACCCGGCAACTCAC
TGCCATTGGCCGCGCTTCACTCGCCGAGCTTGACACGGTGCCAGGGGTGG
GGGAGAAGGTCAGGTCGACGTTGCGGCTCTTGGGGTTCTTGGAAGACGAG
CAAGGCGTAACAGAGGAAGGTTCGCAGGGGAATGGGGGTCTCAGTTGAGG
AAGACAGAAAACGCAGACGCAGAGAGCAGTGTACAAAAGAAAAAAACACA
AAGTACTCATTT

Coding sequence (CDS) from alignment at chr3:926062..929173-

>NO03G03100.1 ID=NO03G03100.1|Name=NO03G03100.1|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at chr3:926062..929173- (Nannochloropsis oceanica)
ATGTGTTTGTATCTGTGTAGGTGGAAATACCAAATTATGCCCGTGCGTGA
AAAAGGGGGGGAAAAACGGTACCGGCTCCGATGGCCGCCATCCCATCGCC
TCAATCATTTCTTCCATAGCCTGGCGCTCACAGACAGCTCTCCAGGACAC
GACCTGACCCCTCCCAACCCATGTCCGTCACCATATAGGGCATTCTCAGT
TAGCATGCGGATGGTGGCATACTTCGACGTGCACAGGCGCTGGCTTGTCA
CACTGGCAACCATTTTACTCGCCCTCCTCATCCTTTCTCAGGGAGGGCAA
TCGTCCCCTGCGGACGTCTCGGACCCTTCTCCGATCGCACGAAAGCGGGC
GCCAGCAGCAGGAAAGCGGCCGAAAGGTGCCAAGCCACTCAGTAGACCAG
CAGGGCGTAGGCCAACCTTACCCGTGCCTGAGAGGCGGAAGGACGAGGTC
AAGATCGGAGGGAGCAAGACGGCGGCGCCCGCAGCGGCCCAGGTGGAGGT
AGAGGAAGTTGAGGAAGGGCTGCTTGAGGAGGCCATGCGAGAGCGGTCAA
TCAACAAATATTTTTCCGCGGACCCTTTGTGGACGGGACAACTAATCGCG
AGCGGGATGGCGTGGTTTTTGGTGCTCACGGCAGCTTCACTACCAGCAGA
CGTGGCGGGGGAGAGGCCAGTGCTAATGATCCTGACAGTGCGTCATGCCT
TTGGCCTGGCTGCGGATGTGCGCCGGGTGTTGAGAGAAGCGGCGGAAGGA
GAGGTGGACCGAAGGAAGATTCGCAAGCTCGCCCGCGGCCTAACCCGTGT
CCCAGGCGCCCCCTCCTACCTCCTCTATTCCGCCGCCCTCCTCACTTGGC
CTGCGACAAACTCACCCAAAGGAGTAGTCAAAGCCCTCGGCCCTCTTCTC
CTACGTGAGTTTTATACGGCATTGGCAGCAGGACTGGACATGCTGCAGAT
CTTGGGAGTGTCTTCCGAAGCGGCCTCTGGCCCCGCGGCGGCTGCGAGGT
GTGGGCCGCGACGTTTCATGCCCGGCTCGCTTTCAACCATCAGTTTGGTG
TTCGAGGCGTCGTTGGGACTCTCCTTGGTGGTGGCACTCTTGCGGAGTCG
GAACGAAGGCGGGATGCTGCTACGACGGTGTCTGGCCACCCTGCTCTATG
CCAACTTCCTTTACAACCGCGTCGGTCATCTTCCAGGGCTTAAGGAAGCT
TTAGGTCGACGCTCCGTAGGCGGCTCAGTCGCTGCCTTGCTCAAGCCCTT
ATTCAAGGACCTGGAGCCAACCACCCGGCAACTCACTGCCATTGGCCGCG
CTTCACTCGCCGAGCTTGACACGGTGCCAGGGGTGGGGGAGAAGGTCAGG
TCGACGTTGCGGCTCTTGGGGTTCTTGGAAGACGAGCAAGGCGTAACAGA
GGAAGGTTCGCAGGGGAATGGGGGTCTCAGTTGA

Synonyms

Publications