NO03G02850.4, NO03G02850.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02850.4
Unique NameNO03G02850.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1523
Alignment locationchr3:857958..859765 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:857958..859765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02850.4 vs.
Match: EWM29725.1 (adp-ribosylation factor 3 [Nannochloropsis gaditana])

HSP 1 Score: 264.6 bits (675), Expect = 2.800e-67
Identity = 129/137 (94.16%), Postives = 135/137 (98.54%), Query Frame = 0 
Query:    1 MQSLSTMFGSKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYFPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRDSILLVFANKQDQKGALNASQVT 138
            +QS S MFG+KECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCY+PNTDAIIFVVDSADVERLAIAKQELCAMLEEEELR+SILLVFANKQDQKGALNASQ++
Sbjct:    9 IQSFSAMFGNKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRESILLVFANKQDQKGALNASQIS 145
The following BLAST results are available for this feature:
BLAST of NO03G02850.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29725.12.800e-6794.16adp-ribosylation factor 3 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02850NO03G02850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02850.4NO03G02850.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02850.4.cds1NO03G02850.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02850.4.cds2NO03G02850.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02850.4.cds3NO03G02850.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02850.4 ID=NO03G02850.4|Name=NO03G02850.4|organism=Nannochloropsis oceanica|type=mRNA|length=1523bp
ATTAAAGAAAGGGTAGCGAGAGAGATGGAAAGGCGGGGGGGCGGTGGCCT
ACCAGCGCCTGTCTCCCGTTCCCGAACCGGTCGAATTCCAGCTACAATTG
CGACTCCATTGCGACAAATAAGTGAATGGACATCTTCTGAAGGCAGCAGC
AAGAAGTCGTCGTCCCTATTGATTCTAATTCCACTTTACCTTTCCTACTC
TCCCTCTACAGGAGCGCCAACAAGAAACTCCCCTTCCTCGCTGCGCCGCC
TTCTTTTTCACAGGGCATCTCAGTACAGGAGCTACTCTTTGAACGATGTA
AGTATGATGAGAAAAGTTCGAGACATGAATGAATGAAGTGCCAGGCTTCA
TGGCGCTGGTGCGATTTCTTCGACCTGATGTCGTTCAGGCCCCGCGTCAT
CGTCGTCTACATGTCAAAATAGTCAGGACATGAGCTTTTTCTCGCAAGTC
CGTGGCCAACTAGCGGATCATTTTCATTTGGCTTTGGACTTGGCTCTGGA
TGTGTGGACTTGCATATTTCCAAGATCTCAAGATAAAGATAAAGCAGCCT
GGCGCTTCGGCGGGGGAGGGGGGGTCGTAGGGGTGGATGGGAGTTTCCCG
ACGACGCATCAACTAATGTCGATGGGCACTAAACACACCAAATCATAGGG
GTTTGCTTATTTCTAAGATCATGCAGTCTCTTTCTACCATGTTCGGCTCC
AAGGAGTGCAGAATTTTGATCCTTGGACTAGACAATGCCGGGAAGACCAC
AATATTGAACAGGCTGCAAAATGACTCGGACGAGGTGATGCAGACTGTGC
CGACGATTGGCTTCAATGTGGAGACACTGCAATACAAGAACATCAAGTTC
CAGGTGTGGGACCTGGGTGGCCAGACCAGCATCCGCCCTTACTGGCGGTG
CTATTTCCCCAACACTGACGCCATCATCTTCGTGGTGGACAGTGCGGATG
TGGAGAGGCTTGCCATCGCAAAGCAGGAGCTGTGTGCCATGCTGGAAGAA
GAAGAACTTCGTGACTCCATCCTACTCGTCTTTGCCAACAAGCAGGACCA
GAAAGGCGCCCTCAACGCAAGCCAGGTAACGTGGCAGCATATGCATCCCT
TTACTTACCGATTTAAACCCGCTCCTTCCCACCCTCTTCCATCCCTCTCT
TCTTATTACTACAAATTAACGCTTTCCTTTTCATCAACGCCGATCTTTAC
TTATCATGTTCCGGTCTTGCAGATTTCCGAGGCCCTGGGCCTACCCAACC
TCAGAAACAGGCAATGGTCGATTCAAGAGACCTCTGCGACCAAAGGAAAG
GGGTTGTTCGAAGGCTTTGATTGGCTGTCGACGGCAATTATGGGGGGTGG
GAAGTGAGGGTTGGGAGCAATCTCTTGTGGGAGTTTGTGTACGGAGTCAG
GCATGTTAACGCAAGATGAAAGGATGTCAGACGGAGAAATCGGGGCGGCA
GGCGCAACTCATGTATGTAACATTAGAAACTGCATCTTTTCCTGTTCCGG
TATCGCACACTGCAAGACCAAAT
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protein sequence of NO03G02850.4

>NO03G02850.4-protein ID=NO03G02850.4-protein|Name=NO03G02850.4|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MQSLSTMFGSKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNV
ETLQYKNIKFQVWDLGGQTSIRPYWRCYFPNTDAIIFVVDSADVERLAIA
KQELCAMLEEEELRDSILLVFANKQDQKGALNASQVTWQHMHPFTYRFKP
APSHPLPSLSSYYYKLTLSFSSTPIFTYHVPVLQISEALGLPNLRNRQWS
IQETSATKGKGLFEGFDWLSTAIMGGGK*
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mRNA from alignment at chr3:857958..859765-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02850.4 ID=NO03G02850.4|Name=NO03G02850.4|organism=Nannochloropsis oceanica|type=mRNA|length=1808bp|location=Sequence derived from alignment at chr3:857958..859765- (Nannochloropsis oceanica)
ATTAAAGAAAGGGTAGCGAGAGAGATGGAAAGGCGGGGGGGCGGTGGCCT
ACCAGCGCCTGTCTCCCGTTCCCGAACCGGTCGAATTCCAGCTACAATTG
CGACTCCATTGCGACAAATAAGTGAATGGACATCTTCTGAAGGCAGCAGC
AAGAAGTCGTCGTCCCTATTGATTCTAATTCCACTTTACCTTTCCTACTC
TCCCTCTACAGGAGCGCCAACAAGAAACTCCCCTTCCTCGCTGCGCCGCC
TTCTTTTTCACAGGGCATCTCAGTACAGGAGCTACTCTTTGAACGATGTA
AGTATGATGAGAAAAGTTCGAGACATGAATGAATGAAGTGCCAGGCTTCA
TGGCGCTGGTGCGATTTCTTCGACCTGATGTCGTTCAGGCCCCGCGTCAT
CGTCGTCTACATGTCAAAATAGTCAGGACATGAGCTTTTTCTCGCAAGTC
CGTGGCCAACTAGCGGATCATTTTCATTTGGCTTTGGACTTGGCTCTGGA
TGTGTGGACTTGCATATTTCCAAGATCTCAAGATAAAGATAAAGCAGCCT
GGCGCTTCGGCGGGGGAGGGGGGGTCGTAGGGGTGGATGGGAGTTTCCCG
ACGACGCATCAACTAATGTCGATGGGCACTAAACACACCAAATCATAGGG
GTTTGCTTATTTCTAAGATCATGCAGTCTCTTTCTACCATGTTCGGCTCC
AAGGAGTGCAGAATTTTGATCCTTGGACTAGACAATGCCGGGAAGACCAC
AATATTGAACAGGCTGCAAAATGACTCGGACGAGGTGATGCAGACTGTGC
CGACGATTGGGTGAGCGATTGGCCATTATAGACCTCCTTATGTCCCGTAG
CTACTCTTTCTTTACCCTTGTACTCCCATCTGTTGTTTGACACCACGAAG
AGCTATCTGATTTCTCGTCTTTTTTTCTTCCTCCATCTAGCTTCAATGTG
GAGACACTGCAATACAAGAACATCAAGTTCCAGGTACGTCGTGTCTATGC
GCGTAAGGAGCAATGATCAGGGTGCCGGGCTTCTGATCTCGTGTATGCGC
TCTCCACTTGCCCGAGCTCGCTATTCTGCCCACTTCCTCTCTTGTTACGA
CTGCCCCTTGACATAGTATCATGCACGCACAATCGCAGGTGTGGGACCTG
GGTGGCCAGACCAGCATCCGCCCTTACTGGCGGTGCTATTTCCCCAACAC
TGACGCCATCATCTTCGTGGTGGACAGTGCGGATGTGGAGAGGCTTGCCA
TCGCAAAGCAGGAGCTGTGTGCCATGCTGGAAGAAGAAGAACTTCGTGAC
TCCATCCTACTCGTCTTTGCCAACAAGCAGGACCAGAAAGGCGCCCTCAA
CGCAAGCCAGGTAACGTGGCAGCATATGCATCCCTTTACTTACCGATTTA
AACCCGCTCCTTCCCACCCTCTTCCATCCCTCTCTTCTTATTACTACAAA
TTAACGCTTTCCTTTTCATCAACGCCGATCTTTACTTATCATGTTCCGGT
CTTGCAGATTTCCGAGGCCCTGGGCCTACCCAACCTCAGAAACAGGCAAT
GGTCGATTCAAGAGACCTCTGCGACCAAAGGAAAGGGGTTGTTCGAAGGC
TTTGATTGGCTGTCGACGGCAATTATGGGGGGTGGGAAGTGAGGGTTGGG
AGCAATCTCTTGTGGGAGTTTGTGTACGGAGTCAGGCATGTTAACGCAAG
ATGAAAGGATGTCAGACGGAGAAATCGGGGCGGCAGGCGCAACTCATGTA
TGTAACATTAGAAACTGCATCTTTTCCTGTTCCGGTATCGCACACTGCAA
GACCAAAT
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Coding sequence (CDS) from alignment at chr3:857958..859765-

>NO03G02850.4 ID=NO03G02850.4|Name=NO03G02850.4|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at chr3:857958..859765- (Nannochloropsis oceanica)
ATGCAGTCTCTTTCTACCATGTTCGGCTCCAAGGAGTGCAGAATTTTGAT
CCTTGGACTAGACAATGCCGGGAAGACCACAATATTGAACAGGCTGCAAA
ATGACTCGGACGAGGTGATGCAGACTGTGCCGACGATTGGCTTCAATGTG
GAGACACTGCAATACAAGAACATCAAGTTCCAGGTGTGGGACCTGGGTGG
CCAGACCAGCATCCGCCCTTACTGGCGGTGCTATTTCCCCAACACTGACG
CCATCATCTTCGTGGTGGACAGTGCGGATGTGGAGAGGCTTGCCATCGCA
AAGCAGGAGCTGTGTGCCATGCTGGAAGAAGAAGAACTTCGTGACTCCAT
CCTACTCGTCTTTGCCAACAAGCAGGACCAGAAAGGCGCCCTCAACGCAA
GCCAGGTAACGTGGCAGCATATGCATCCCTTTACTTACCGATTTAAACCC
GCTCCTTCCCACCCTCTTCCATCCCTCTCTTCTTATTACTACAAATTAAC
GCTTTCCTTTTCATCAACGCCGATCTTTACTTATCATGTTCCGGTCTTGC
AGATTTCCGAGGCCCTGGGCCTACCCAACCTCAGAAACAGGCAATGGTCG
ATTCAAGAGACCTCTGCGACCAAAGGAAAGGGGTTGTTCGAAGGCTTTGA
TTGGCTGTCGACGGCAATTATGGGGGGTGGGAAGTGA
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Synonyms
Publications