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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:782675..784461 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G02760.1 vs.
Match: EWM29714.1 (small gtp-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 409.1 bits (1050), Expect = 9.100e-111 Identity = 212/224 (94.64%), Postives = 220/224 (98.21%), Query Frame = 0
Query: 1 MAATSPVMSPSSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVEDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQENIMFIETSAKAGFNIKPLFRKLATALPGMESAQSQGSANLIDIKLAATPATSSSDEAEARSRCSC 225
MAATSPV SP+SPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWV+DVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQ+NIMFIETSAKAGFNIKPLFRKLATALPGMESAQ+QGSANLIDIKLAA PA SSS++A+ RSRC+C
Sbjct: 94 MAATSPVKSPTSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKLAAAPA-SSSEQADTRSRCAC 316
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G02760.1 ID=NO03G02760.1|Name=NO03G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1284bp ACAGGAGCAAAGGGTTGCGGTGCAAAGACGCCGGTTGTCAATCCAAGCAT TCCGGCCAAACCACTTGCCCTCTCCACTTCCCGTAAAAGCCCACGTCAAG CAAAGTACAGCTCTCATCACTATGGCAGCCACGTCCCCCGTCATGTCTCC TTCGTCACCGGCATCCCTGCCTCAGATACCTTCATTGGCCAAGTACAAGC TAGTCTTTTTAGGGGATCAAGGCGTGGGAAAGACATCCATCATTACACGC TTTATGTACGACACCTTTGAGAAGAACTACCAGGCCACGATCGGCATCGA TTTTCTGTCCAAGACCATGTACTTGGAGGACCGCACCGTTCGACTGCAGC TGTGGGACACAGCGGGGCAGGAACGATTTCGGAGCTTGATTCCGAGCTAC ATTCGGGACTCCTCCGTGGCCGTGGTCGTGTACGACATCACAAATCGTGC CTCCTTTTTGAACACGTCCAAGTGGGTGGAGGACGTGCGGAATGAGCGCG GGAACGACGTCATCATCATGCTTGTCGGCAACAAGACGGATTTGAGTGAT CGGCGGCAAGTGTCGACAGAAGAAGGTGAGGACAAGGCGAAGCAAGAGAA TATCATGTTCATCGAGACGTCCGCCAAGGCGGGATTCAACATCAAGCCCC TCTTCCGGAAGCTTGCCACAGCCTTGCCAGGAATGGAATCCGCCCAGAGC CAAGGCAGTGCCAACCTTATTGACATCAAGCTAGCTGCCACTCCTGCAAC TTCTTCTTCTGACGAAGCCGAGGCCAGATCACGCTGTTCGTGTTAGCGTG GCGGAGGGAGAGGAAAGAGGAAGGGGGGGAGGGGGACAGGGGGAGAAAAC AGTACCAGAGTATGGCGAGGACAAGGGCCCGCCAGAATATACATATCCTG TTTGTAATTTGCGTCACTCGGAATAATGGGAGAAAGTTGATTTCATATCC TCTTCGTGAAGGGAATTGAAATAAAAAATAAAGGTGAAAGAGATGTTCCA TGCAACGCACGTAGAGTGATCGTCGCCAACATCCCTCTTTTCTTGTTTTA GGCTCAACGCGGTGAGGCAATAGAAGCGGGAAGACATGAGCCCAAAATAA AGATAATCCACCTCGACGTCCAGGTTCAGTGCTCCTTTGAGTCCTCTGAA ACCCAACAATGCCCCATGCTTTCAAGTAATGACAAGAAGGAAGTCAATCG AAACAACAGACCTAGAATCCTGGTGATGCCATGCTCGAACCCTTTTTGGC AGCGGCGGACTCGCTGCTGTATGATAAGTCTTTC back to topprotein sequence of NO03G02760.1 >NO03G02760.1-protein ID=NO03G02760.1-protein|Name=NO03G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp MAATSPVMSPSSPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFE KNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA VVVYDITNRASFLNTSKWVEDVRNERGNDVIIMLVGNKTDLSDRRQVSTE EGEDKAKQENIMFIETSAKAGFNIKPLFRKLATALPGMESAQSQGSANLI DIKLAATPATSSSDEAEARSRCSC* back to topmRNA from alignment at chr3:782675..784461+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G02760.1 ID=NO03G02760.1|Name=NO03G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1787bp|location=Sequence derived from alignment at chr3:782675..784461+ (Nannochloropsis oceanica) ACAGGAGCAAAGGGTTGCGGTGCAAAGACGCCGGTTGTCAATCCAAGCAT
TCCGGCCAAACCACTTGCCCTCTCCACTTCCCGTAAAAGCCCACGTCAAG
CAAAGTACAGCTCTCATCACTATGGCAGCCACGTCCCCCGTCATGTCTCC
TTCGTCACCGGCATCCCTGCCTCAGATACCTTCATTGGCCAAGTACAAGC
TAGGTGAGTGGAGAAGGGGCAGGTGGAGCAAGAGATAGAGCACGGACTTG
CAGCATACACTTCTTTCCGGTTGCCGTCCTTGAGACTCACCCGTGCCTTT
ATGGCTGTATATTTTAGTCTTTTTAGGGGATCAAGGCGTGGGAAAGACAT
CCATCATTACACGCTTTATGTACGACACCTTTGAGAAGAACTACCAGGTG
CGTGTATACTCAAAAGATCGTGGGATGGGCCGGTCTGAGGGGTGGGAGGA
GAGAGATGCATGCATGCTGGAGCCACTCAATCCACGCCTTTTTCTTATTT
CTCTTTCTACGATACAACAGGCCACGATCGGCATCGATTTTCTGTCCAAG
ACCATGTACTTGGAGGACCGCACCGTTCGACTGCAGCTGTGGGACACAGC
GGGGCAGGAGTAAGTATTACTGACAGACTTGTGAAAGGAAGTATTACTGA
TAGACTTGTGAAAGGAATATGTCCTTACATATGTCGCATCTCGATTACTT
ATCGCGTTTCTTCTATCATTTCTTCCTCAGACGATTTCGGAGCTTGATTC
CGAGCTACATTCGGGACTCCTCCGTGGCCGTGGTCGTGTACGACATCACA
AGTAAGTGCATGCATCATTGATGGAAGAGAGCGCCTTTTTGACAGGGCTA
TCGCCAAGTTCTGTGTCCGTGCGGTTGGTCGGCTTACACCCATGCCATCT
TTTTCCACGTTCGGTCACCTGACTTCTCACACCTTATCAACCCTAGATCG
TGCCTCCTTTTTGAACACGTCCAAGTGGGTGGAGGACGTGCGGAATGAGC
GCGGGAACGACGTCATCATCATGCTTGTCGGCAACAAGACGGATTTGAGT
GATCGGCGGCAAGTGTCGACAGAAGAAGGTGAGGACAAGGCGAAGCAAGA
GAATATCATGTTCATCGAGACGTCCGCCAAGGCGGGATTCAACATCAAGC
CCCTCTTCCGGAAGCTTGCCACAGCCTTGCCAGGAATGGAATCCGCCCAG
AGCCAAGGCAGTGCCAACCTTATTGACATCAAGCTAGCTGCCACTCCTGC
AACTTCTTCTTCTGACGAAGCCGAGGCCAGATCACGCTGTTCGTGTTAGC
GTGGCGGAGGGAGAGGAAAGAGGAAGGGGGGGAGGGGGACAGGGGGAGAA
AACAGTACCAGAGTATGGCGAGGACAAGGGCCCGCCAGAATATACATATC
CTGTTTGTAATTTGCGTCACTCGGAATAATGGGAGAAAGTTGATTTCATA
TCCTCTTCGTGAAGGGAATTGAAATAAAAAATAAAGGTGAAAGAGATGTT
CCATGCAACGCACGTAGAGTGATCGTCGCCAACATCCCTCTTTTCTTGTT
TTAGGCTCAACGCGGTGAGGCAATAGAAGCGGGAAGACATGAGCCCAAAA
TAAAGATAATCCACCTCGACGTCCAGGTTCAGTGCTCCTTTGAGTCCTCT
GAAACCCAACAATGCCCCATGCTTTCAAGTAATGACAAGAAGGAAGTCAA
TCGAAACAACAGACCTAGAATCCTGGTGATGCCATGCTCGAACCCTTTTT
GGCAGCGGCGGACTCGCTGCTGTATGATAAGTCTTTC back to topCoding sequence (CDS) from alignment at chr3:782675..784461+ >NO03G02760.1 ID=NO03G02760.1|Name=NO03G02760.1|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at chr3:782675..784461+ (Nannochloropsis oceanica) ATGGCAGCCACGTCCCCCGTCATGTCTCCTTCGTCACCGGCATCCCTGCC TCAGATACCTTCATTGGCCAAGTACAAGCTAGTCTTTTTAGGGGATCAAG GCGTGGGAAAGACATCCATCATTACACGCTTTATGTACGACACCTTTGAG AAGAACTACCAGGCCACGATCGGCATCGATTTTCTGTCCAAGACCATGTA CTTGGAGGACCGCACCGTTCGACTGCAGCTGTGGGACACAGCGGGGCAGG AACGATTTCGGAGCTTGATTCCGAGCTACATTCGGGACTCCTCCGTGGCC GTGGTCGTGTACGACATCACAAATCGTGCCTCCTTTTTGAACACGTCCAA GTGGGTGGAGGACGTGCGGAATGAGCGCGGGAACGACGTCATCATCATGC TTGTCGGCAACAAGACGGATTTGAGTGATCGGCGGCAAGTGTCGACAGAA GAAGGTGAGGACAAGGCGAAGCAAGAGAATATCATGTTCATCGAGACGTC CGCCAAGGCGGGATTCAACATCAAGCCCCTCTTCCGGAAGCTTGCCACAG CCTTGCCAGGAATGGAATCCGCCCAGAGCCAAGGCAGTGCCAACCTTATT GACATCAAGCTAGCTGCCACTCCTGCAACTTCTTCTTCTGACGAAGCCGA GGCCAGATCACGCTGTTCGTGTTAG back to top
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