NO03G01400.2, NO03G01400.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01400.2
Unique NameNO03G01400.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1051
Alignment locationchr3:434017..435446 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:434017..435446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G01400.2 vs.
Match: EWM29588.1 (hypothetical protein Naga_100006g79 [Nannochloropsis gaditana])

HSP 1 Score: 82.8 bits (203), Expect = 1.900e-12
Identity = 93/247 (37.65%), Postives = 127/247 (51.42%), Query Frame = 0 
Query:    1 MTARTRGTTAVTPISSSGKATRDTGNTKTKTTRTKNSSSTSQPHPSPPAVALTSGIDV-DDDDDAPDEMKSKVVRDDDQRQESNAAATSSSKSKSKKRPRKAKAREELYWAEKKGKRERGE-EAEEEDEEEKEGEEGLAMVAAEGESDEKVAGMVSKKSKVTSSAGAGPLSADYLESVQLAKQAEQRRRIHEALRVIESARRKAEAAERQK-PKALKAPRVFGNIHVATLGAVQQQADEAPDVPPEV 245
            MT RTR    V    +  K    T   +  +  +   S TS P P   AV  TS +D  DDDDD P E++S+ +RD ++    N +  S   ++ KKRPRK K RE  YWAEK G    G+     EDE + +G       A E   D +   +      V  S+G  PL A + E+VQ AK+AEQ++RI+EALR +E+ R K    E+ +  K +K PRV GNI V  L  + ++ D   DVP EV
Sbjct:    1 MTTRTRAKANVGNDVTPAKEGVATRQRRQASDSSGPPSQTSLP-PIKKAVKRTSNVDQSDDDDDKPVEIQSRAIRDGER---GNHSRPSGLNTRVKKRPRKVKERENKYWAEKGGHEGAGQGRPVHEDEGDVQGLSAPNHAATEANEDGQ-KNVEEANRLVDPSSGDEPLPATFWEAVQRAKEAEQQQRINEALRRVETKRGKTSEGEQTRFKKIVKIPRVSGNIQVVPLNELTEEVDGRTDVPSEV 242
The following BLAST results are available for this feature:
BLAST of NO03G01400.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29588.11.900e-1237.65hypothetical protein Naga_100006g79 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01400NO03G01400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01400.2NO03G01400.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01400.2.cds1NO03G01400.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01400.2.cds2NO03G01400.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01400.2.cds3NO03G01400.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01400.2.cds4NO03G01400.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01400.2 ID=NO03G01400.2|Name=NO03G01400.2|organism=Nannochloropsis oceanica|type=mRNA|length=1051bp
AAACCACAGGATCATGACGGCAAGGACACGCGGCACAACGGCCGTGACAC
CAATAAGTAGCAGCGGGAAAGCTACCAGGGACACAGGCAACACCAAGACC
AAGACGACACGCACGAAAAACTCCTCCTCGACTTCCCAACCCCATCCCTC
ACCACCCGCCGTCGCGCTGACATCCGGCATTGACGTGGACGACGACGATG
ACGCGCCGGATGAGATGAAGTCCAAGGTGGTACGTGACGACGACCAAAGG
CAGGAAAGTAATGCAGCCGCCACCTCAAGCAGCAAGAGCAAGAGCAAGAA
GCGGCCACGCAAGGCCAAGGCGCGTGAGGAACTGTATTGGGCGGAGAAGA
AAGGGAAGCGAGAGAGAGGGGAGGAAGCGGAGGAGGAGGATGAGGAGGAA
AAAGAGGGCGAGGAGGGGCTGGCCATGGTTGCTGCCGAAGGAGAATCTGA
CGAGAAGGTCGCTGGAATGGTCAGTAAGAAATCCAAAGTCACGTCGTCGG
CAGGGGCAGGCCCTTTGTCGGCAGATTATTTGGAGTCGGTTCAGCTGGCC
AAGCAGGCGGAGCAGCGACGGCGGATCCATGAGGCGTTGCGAGTGATTGA
GTCGGCCAGACGGAAGGCCGAGGCAGCGGAGCGACAGAAGCCGAAGGCGC
TCAAGGCTCCGCGTGTCTTCGGTAACATTCATGTCGCCACACTGGGTGCA
GTGCAGCAGCAAGCGGACGAGGCGCCTGACGTGCCTCCTGAGGTATGTAC
AGGAAAAAAGGCCACTTGCTGCCAACACTACACGCACCAAGCAGCCTTCT
CCTTGACCCACACATTGGCTTCTTTCTTCATTATTACGTCCTTTTACAGG
TGCTAGCTTTTGCACGCTCACTGGGTGAGAGTAGCGGCAAGGCGACCCAG
CGGAAACGTGTACCTTTCGTCGCCTTTTCCAATAGCAAGCCCAAAATGCT
TGCTACTGCTTCTGTGAGGAGGGGGAGAGCGGGCAAGGGAAAGGTGGGCA
GCGGCAAAAAATGAGAACAAGCAAAGCATGAAAAGGAGGTCTAAAGATGG
A
back to top

protein sequence of NO03G01400.2

>NO03G01400.2-protein ID=NO03G01400.2-protein|Name=NO03G01400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MTARTRGTTAVTPISSSGKATRDTGNTKTKTTRTKNSSSTSQPHPSPPAV
ALTSGIDVDDDDDAPDEMKSKVVRDDDQRQESNAAATSSSKSKSKKRPRK
AKAREELYWAEKKGKRERGEEAEEEDEEEKEGEEGLAMVAAEGESDEKVA
GMVSKKSKVTSSAGAGPLSADYLESVQLAKQAEQRRRIHEALRVIESARR
KAEAAERQKPKALKAPRVFGNIHVATLGAVQQQADEAPDVPPEVCTGKKA
TCCQHYTHQAAFSLTHTLASFFIITSFYRC*
back to top

mRNA from alignment at chr3:434017..435446-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01400.2 ID=NO03G01400.2|Name=NO03G01400.2|organism=Nannochloropsis oceanica|type=mRNA|length=1430bp|location=Sequence derived from alignment at chr3:434017..435446- (Nannochloropsis oceanica)
AAACCACAGGATCATGACGGCAAGGACACGCGGCACAACGGCCGTGACAC
CAATAAGTAGCAGCGGGAAAGCTACCAGGGACACAGGCAACACCAAGACC
AAGACGACACGCACGAAAAACTCCTCCTCGACTTCCCAACCCCATCCCTC
ACCACCCGCCGTCGCGCTGACATCCGGCATTGACGTGGACGACGACGATG
ACGCGCCGGATGAGATGAAGGTACGTGCAAGTAAGGTGTGGTAGGACGAA
GATCACGGTGAGACGGCTTTTAGATGTAGGCAAGGGATTGTCATGCGCTC
GCCTTGCACACACTCTAATCCTCACCATTCACCCATCATATTTAGTCCAA
GGTGGTACGTGACGACGACCAAAGGCAGGAAAGTAATGCAGCCGCCACCT
CAAGCAGCAAGAGCAAGAGCAAGAAGCGGCCACGCAAGGCCAAGGCGCGT
GAGGAACTGTATTGGGCGGAGAAGAAAGGGAAGCGAGAGAGAGGGGAGGA
AGCGGAGGAGGAGGATGAGGAGGAAAAAGAGGGCGAGGAGGGGCTGGCCA
TGGTTGCTGCCGAAGGAGAATCTGACGAGAAGGTCGCTGGAATGGTCAGT
AAGAAATCCAAAGTCACGTCGTCGGCAGGGGCAGGCCCTTTGTCGGCAGA
TTATTTGGAGTCGGTTCAGCTGGCCAAGCAGGCGGAGCAGCGACGGCGGA
TCCATGAGGCGTTGCGAGTGATTGAGTCGGCCAGGCACGTCGATGAAGGG
AGGGGAAGGGAAGGATGCACGAATATGGGAGGATAAATCGAACTTTCACT
TCTGGGGTCACACTCATACGAACGTGCTTTACTAATTGTATACTCCTATC
ACGCGACGTACATTCAGACGGAAGGCCGAGGCAGCGGAGCGACAGAAGCC
GAAGGCGCTCAAGGCTCCGCGTGTCTTGTAAGTGTACGAAGGAGGAAGGG
AGGGAGGGAGGGAGTGAGGGAGGGGGGGGGGCTGCACAATATTTTACGAT
GAAAGAAAAATAGGTGCCTCACATACGTTCCTTAAATTTGAACAACAGCG
GTAACATTCATGTCGCCACACTGGGTGCAGTGCAGCAGCAAGCGGACGAG
GCGCCTGACGTGCCTCCTGAGGTATGTACAGGAAAAAAGGCCACTTGCTG
CCAACACTACACGCACCAAGCAGCCTTCTCCTTGACCCACACATTGGCTT
CTTTCTTCATTATTACGTCCTTTTACAGGTGCTAGCTTTTGCACGCTCAC
TGGGTGAGAGTAGCGGCAAGGCGACCCAGCGGAAACGTGTACCTTTCGTC
GCCTTTTCCAATAGCAAGCCCAAAATGCTTGCTACTGCTTCTGTGAGGAG
GGGGAGAGCGGGCAAGGGAAAGGTGGGCAGCGGCAAAAAATGAGAACAAG
CAAAGCATGAAAAGGAGGTCTAAAGATGGA
back to top

Coding sequence (CDS) from alignment at chr3:434017..435446-

>NO03G01400.2 ID=NO03G01400.2|Name=NO03G01400.2|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at chr3:434017..435446- (Nannochloropsis oceanica)
ATGACGGCAAGGACACGCGGCACAACGGCCGTGACACCAATAAGTAGCAG
CGGGAAAGCTACCAGGGACACAGGCAACACCAAGACCAAGACGACACGCA
CGAAAAACTCCTCCTCGACTTCCCAACCCCATCCCTCACCACCCGCCGTC
GCGCTGACATCCGGCATTGACGTGGACGACGACGATGACGCGCCGGATGA
GATGAAGTCCAAGGTGGTACGTGACGACGACCAAAGGCAGGAAAGTAATG
CAGCCGCCACCTCAAGCAGCAAGAGCAAGAGCAAGAAGCGGCCACGCAAG
GCCAAGGCGCGTGAGGAACTGTATTGGGCGGAGAAGAAAGGGAAGCGAGA
GAGAGGGGAGGAAGCGGAGGAGGAGGATGAGGAGGAAAAAGAGGGCGAGG
AGGGGCTGGCCATGGTTGCTGCCGAAGGAGAATCTGACGAGAAGGTCGCT
GGAATGGTCAGTAAGAAATCCAAAGTCACGTCGTCGGCAGGGGCAGGCCC
TTTGTCGGCAGATTATTTGGAGTCGGTTCAGCTGGCCAAGCAGGCGGAGC
AGCGACGGCGGATCCATGAGGCGTTGCGAGTGATTGAGTCGGCCAGACGG
AAGGCCGAGGCAGCGGAGCGACAGAAGCCGAAGGCGCTCAAGGCTCCGCG
TGTCTTCGGTAACATTCATGTCGCCACACTGGGTGCAGTGCAGCAGCAAG
CGGACGAGGCGCCTGACGTGCCTCCTGAGGTATGTACAGGAAAAAAGGCC
ACTTGCTGCCAACACTACACGCACCAAGCAGCCTTCTCCTTGACCCACAC
ATTGGCTTCTTTCTTCATTATTACGTCCTTTTACAGGTGCTAG
back to top
Synonyms
Publications