NO03G00090.1, NO03G00090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00090.1
Unique NameNO03G00090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1671
Alignment locationchr3:26223..27893 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:26223..27893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G00090.1 vs.
Match: XP_009033392.1 (hypothetical protein AURANDRAFT_61213 [Aureococcus anophagefferens]; EGB12347.1 hypothetical protein AURANDRAFT_61213 [Aureococcus anophagefferens])

HSP 1 Score: 160.2 bits (404), Expect = 1.800e-35
Identity = 104/333 (31.23%), Postives = 172/333 (51.65%), Query Frame = 0 
Query:  191 FIKKILPQLVVGILLNLVVEWFDLKHTGWWAIRADTQRL-HGFVGAVLAFVLVFRSNASYDRYYEARKTLGLITNQCREAILETCSMFVIKDE--GEHNNLY-------------------RNEIRRKFLVMIAFIRQNIRESHVGFMPNSSESNTPFHEGTNYIRDPIRPRLCDLLTPSEVEGYVNVQPSARAACVASEIKGIAQLLARNVEFSILYYSKISQCLQLSLDAQETLYRIVTTPVPYPYAWILNVMLVVFIYSVP----FLYDSQRGGSYFGM------IILVVAYFGCQRIAQQCENPLEWDACDLDVELLTMSNHDETRDIS 492
            F++++ P LV  + +NLV+   D  H G  ++ +    +  G VGAVL+ +LVFR+N++Y+RYYE +K  G++TNQ R+ I+   +     ++  G  N  Y                   R  +RR+  V++  +RQ++RE   GF+P  +    P+++ T +I DP RPRL D+LTP EV  Y  V   AR    +  +    Q LA ++     +    ++ +Q  LDA ++  RIV TP+P+ Y  IL V+L +F+YSVP    +   +++   ++ M      I+    Y+G  +IA + ENP  +   D D++      H ET  I+
Sbjct:   23 FVQQLWPNLVTLVFVNLVINLLD--HLGVKSMPSSQFDITQGLVGAVLSLLLVFRTNSAYERYYEGKKAYGVVTNQVRQIIMNAHAFLAFHEDASGHLNARYQPAAELRERAHEAEVVHELRERVRRQANVLLGVLRQDLREKRCGFVPECALHEVPYNKRT-WILDPSRPRLVDMLTPREVATYGTVSSGARVMLASHSLMDALQRLAPSLAQDRAFTECSTRNIQELLDAFKSCQRIVDTPLPFTYTLILGVLLFIFVYSVPVPVAYWARTEKRLHWYSMSGILPSIVTAFFYYGVMQIAIEIENPFNFADVDHDLDGFADKLHSETLAIA 352
The following BLAST results are available for this feature:
BLAST of NO03G00090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009033392.11.800e-3531.23hypothetical protein AURANDRAFT_61213 [Aureococcus... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00090NO03G00090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00090.1NO03G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00090.1.cds1NO03G00090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00090.1 ID=NO03G00090.1|Name=NO03G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp
ATGCCTTCGAAGGATTCCTCACCGTCTAAGCCATTTTTTGGCATGAAGCT
CTTCTCCCCCAACCTATGGCGCTCGTCCGCCTCGTCTCCGTCGCGTCGCT
CGTCCCAAGACCGACAACCGTCCCTTTTGCCCTTGCAAGCCCCGTCACAC
TCGCCTTCAACCCAGATCCAAGCTCCTCTGGCCTCTTCCATATCTTTTGG
TGACTTCTCGCGCGCAGATAGCACCACGCCAAATAATATGTGCTCCTCCT
CTTCCTTGTCATCCTCTCCTTTGGCTCAAACGTCCTCCTTGGCTCAAATT
ACCCCTCCACCGCCCCTTCTGAACGTGATCCGAGCAAAGGACCCCAAGGC
ATTCAAGGGCAAAGCAGCTTTGACCCGGTACCTGGATGCGATGGACCAAG
AGGAAGGCAGGGGCATGCAAACGGGGGGATTACTCGCGGATCCAACGCAG
GCCTCCTCGGCCAAGCACACCGAAATCCCCACCGTCCGCTACAGTAGCGA
GTTAGCCAAGCAGAATTTCTCCTTTCTCCGCATCATTTTTTGCGGGAGAA
ATGGGATGGGGTCCTTTTGGTTTATCAAGAAAATTCTTCCACAGTTGGTT
GTCGGCATCTTGCTCAACTTGGTTGTAGAGTGGTTTGACCTGAAGCATAC
GGGCTGGTGGGCCATTCGTGCTGACACGCAGCGACTGCACGGGTTCGTTG
GGGCAGTCTTGGCTTTTGTCTTGGTTTTTCGGAGCAATGCTAGTTATGAC
CGCTACTATGAGGCACGCAAAACGCTGGGTCTGATTACAAACCAATGCCG
CGAAGCGATTCTGGAGACGTGCTCCATGTTCGTGATTAAAGATGAAGGTG
AGCACAACAACCTGTATAGGAACGAGATTCGCAGAAAGTTCCTGGTCATG
ATAGCATTCATCCGGCAAAACATTCGCGAGTCCCACGTGGGGTTCATGCC
CAACTCTTCCGAAAGCAATACGCCTTTCCACGAAGGCACCAACTACATAA
GGGATCCGATCCGGCCCCGCCTGTGCGACCTGCTGACGCCTTCCGAGGTC
GAAGGTTATGTCAACGTCCAACCTTCGGCGCGCGCGGCGTGTGTGGCCAG
TGAGATCAAGGGCATTGCGCAGCTTTTGGCGCGGAACGTGGAGTTCAGTA
TTTTGTATTACAGCAAGATAAGCCAGTGTCTGCAGTTGTCTTTAGACGCA
CAAGAGACTCTGTACCGCATCGTGACCACGCCGGTTCCCTATCCCTACGC
CTGGATTCTGAATGTGATGCTGGTGGTGTTTATCTACTCCGTACCTTTCC
TGTACGACTCTCAGCGCGGTGGATCTTATTTTGGGATGATCATTTTGGTA
GTGGCGTACTTTGGGTGCCAGCGAATTGCGCAGCAGTGCGAGAATCCCTT
GGAGTGGGACGCCTGCGATCTCGACGTCGAGCTCTTGACCATGAGTAACC
ATGACGAGACGCGCGACATTTCCAACTTTACGCACAGCCTCAACAAGGGC
TTCATCCCCAGCAATATTCGTCGCACTGCCCCTGAGCCTCCCGCGCCTGT
CCCCGATTTGGCCGCTTCACAATCCCCGCCGGAGGCAACAACGCCGACCA
AGCCTCCCCCTGAGTCACCCGAGTCGGCTGCGGCAGCGCCGTCGTCGTCC
GTGCCTGCTGATGCAAAGTAG
back to top

protein sequence of NO03G00090.1

>NO03G00090.1-protein ID=NO03G00090.1-protein|Name=NO03G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MPSKDSSPSKPFFGMKLFSPNLWRSSASSPSRRSSQDRQPSLLPLQAPSH
SPSTQIQAPLASSISFGDFSRADSTTPNNMCSSSSLSSSPLAQTSSLAQI
TPPPPLLNVIRAKDPKAFKGKAALTRYLDAMDQEEGRGMQTGGLLADPTQ
ASSAKHTEIPTVRYSSELAKQNFSFLRIIFCGRNGMGSFWFIKKILPQLV
VGILLNLVVEWFDLKHTGWWAIRADTQRLHGFVGAVLAFVLVFRSNASYD
RYYEARKTLGLITNQCREAILETCSMFVIKDEGEHNNLYRNEIRRKFLVM
IAFIRQNIRESHVGFMPNSSESNTPFHEGTNYIRDPIRPRLCDLLTPSEV
EGYVNVQPSARAACVASEIKGIAQLLARNVEFSILYYSKISQCLQLSLDA
QETLYRIVTTPVPYPYAWILNVMLVVFIYSVPFLYDSQRGGSYFGMIILV
VAYFGCQRIAQQCENPLEWDACDLDVELLTMSNHDETRDISNFTHSLNKG
FIPSNIRRTAPEPPAPVPDLAASQSPPEATTPTKPPPESPESAAAAPSSS
VPADAK*
back to top

mRNA from alignment at chr3:26223..27893-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00090.1 ID=NO03G00090.1|Name=NO03G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp|location=Sequence derived from alignment at chr3:26223..27893- (Nannochloropsis oceanica)
ATGCCTTCGAAGGATTCCTCACCGTCTAAGCCATTTTTTGGCATGAAGCT
CTTCTCCCCCAACCTATGGCGCTCGTCCGCCTCGTCTCCGTCGCGTCGCT
CGTCCCAAGACCGACAACCGTCCCTTTTGCCCTTGCAAGCCCCGTCACAC
TCGCCTTCAACCCAGATCCAAGCTCCTCTGGCCTCTTCCATATCTTTTGG
TGACTTCTCGCGCGCAGATAGCACCACGCCAAATAATATGTGCTCCTCCT
CTTCCTTGTCATCCTCTCCTTTGGCTCAAACGTCCTCCTTGGCTCAAATT
ACCCCTCCACCGCCCCTTCTGAACGTGATCCGAGCAAAGGACCCCAAGGC
ATTCAAGGGCAAAGCAGCTTTGACCCGGTACCTGGATGCGATGGACCAAG
AGGAAGGCAGGGGCATGCAAACGGGGGGATTACTCGCGGATCCAACGCAG
GCCTCCTCGGCCAAGCACACCGAAATCCCCACCGTCCGCTACAGTAGCGA
GTTAGCCAAGCAGAATTTCTCCTTTCTCCGCATCATTTTTTGCGGGAGAA
ATGGGATGGGGTCCTTTTGGTTTATCAAGAAAATTCTTCCACAGTTGGTT
GTCGGCATCTTGCTCAACTTGGTTGTAGAGTGGTTTGACCTGAAGCATAC
GGGCTGGTGGGCCATTCGTGCTGACACGCAGCGACTGCACGGGTTCGTTG
GGGCAGTCTTGGCTTTTGTCTTGGTTTTTCGGAGCAATGCTAGTTATGAC
CGCTACTATGAGGCACGCAAAACGCTGGGTCTGATTACAAACCAATGCCG
CGAAGCGATTCTGGAGACGTGCTCCATGTTCGTGATTAAAGATGAAGGTG
AGCACAACAACCTGTATAGGAACGAGATTCGCAGAAAGTTCCTGGTCATG
ATAGCATTCATCCGGCAAAACATTCGCGAGTCCCACGTGGGGTTCATGCC
CAACTCTTCCGAAAGCAATACGCCTTTCCACGAAGGCACCAACTACATAA
GGGATCCGATCCGGCCCCGCCTGTGCGACCTGCTGACGCCTTCCGAGGTC
GAAGGTTATGTCAACGTCCAACCTTCGGCGCGCGCGGCGTGTGTGGCCAG
TGAGATCAAGGGCATTGCGCAGCTTTTGGCGCGGAACGTGGAGTTCAGTA
TTTTGTATTACAGCAAGATAAGCCAGTGTCTGCAGTTGTCTTTAGACGCA
CAAGAGACTCTGTACCGCATCGTGACCACGCCGGTTCCCTATCCCTACGC
CTGGATTCTGAATGTGATGCTGGTGGTGTTTATCTACTCCGTACCTTTCC
TGTACGACTCTCAGCGCGGTGGATCTTATTTTGGGATGATCATTTTGGTA
GTGGCGTACTTTGGGTGCCAGCGAATTGCGCAGCAGTGCGAGAATCCCTT
GGAGTGGGACGCCTGCGATCTCGACGTCGAGCTCTTGACCATGAGTAACC
ATGACGAGACGCGCGACATTTCCAACTTTACGCACAGCCTCAACAAGGGC
TTCATCCCCAGCAATATTCGTCGCACTGCCCCTGAGCCTCCCGCGCCTGT
CCCCGATTTGGCCGCTTCACAATCCCCGCCGGAGGCAACAACGCCGACCA
AGCCTCCCCCTGAGTCACCCGAGTCGGCTGCGGCAGCGCCGTCGTCGTCC
GTGCCTGCTGATGCAAAGTAG
back to top

Coding sequence (CDS) from alignment at chr3:26223..27893-

>NO03G00090.1 ID=NO03G00090.1|Name=NO03G00090.1|organism=Nannochloropsis oceanica|type=CDS|length=1671bp|location=Sequence derived from alignment at chr3:26223..27893- (Nannochloropsis oceanica)
ATGCCTTCGAAGGATTCCTCACCGTCTAAGCCATTTTTTGGCATGAAGCT
CTTCTCCCCCAACCTATGGCGCTCGTCCGCCTCGTCTCCGTCGCGTCGCT
CGTCCCAAGACCGACAACCGTCCCTTTTGCCCTTGCAAGCCCCGTCACAC
TCGCCTTCAACCCAGATCCAAGCTCCTCTGGCCTCTTCCATATCTTTTGG
TGACTTCTCGCGCGCAGATAGCACCACGCCAAATAATATGTGCTCCTCCT
CTTCCTTGTCATCCTCTCCTTTGGCTCAAACGTCCTCCTTGGCTCAAATT
ACCCCTCCACCGCCCCTTCTGAACGTGATCCGAGCAAAGGACCCCAAGGC
ATTCAAGGGCAAAGCAGCTTTGACCCGGTACCTGGATGCGATGGACCAAG
AGGAAGGCAGGGGCATGCAAACGGGGGGATTACTCGCGGATCCAACGCAG
GCCTCCTCGGCCAAGCACACCGAAATCCCCACCGTCCGCTACAGTAGCGA
GTTAGCCAAGCAGAATTTCTCCTTTCTCCGCATCATTTTTTGCGGGAGAA
ATGGGATGGGGTCCTTTTGGTTTATCAAGAAAATTCTTCCACAGTTGGTT
GTCGGCATCTTGCTCAACTTGGTTGTAGAGTGGTTTGACCTGAAGCATAC
GGGCTGGTGGGCCATTCGTGCTGACACGCAGCGACTGCACGGGTTCGTTG
GGGCAGTCTTGGCTTTTGTCTTGGTTTTTCGGAGCAATGCTAGTTATGAC
CGCTACTATGAGGCACGCAAAACGCTGGGTCTGATTACAAACCAATGCCG
CGAAGCGATTCTGGAGACGTGCTCCATGTTCGTGATTAAAGATGAAGGTG
AGCACAACAACCTGTATAGGAACGAGATTCGCAGAAAGTTCCTGGTCATG
ATAGCATTCATCCGGCAAAACATTCGCGAGTCCCACGTGGGGTTCATGCC
CAACTCTTCCGAAAGCAATACGCCTTTCCACGAAGGCACCAACTACATAA
GGGATCCGATCCGGCCCCGCCTGTGCGACCTGCTGACGCCTTCCGAGGTC
GAAGGTTATGTCAACGTCCAACCTTCGGCGCGCGCGGCGTGTGTGGCCAG
TGAGATCAAGGGCATTGCGCAGCTTTTGGCGCGGAACGTGGAGTTCAGTA
TTTTGTATTACAGCAAGATAAGCCAGTGTCTGCAGTTGTCTTTAGACGCA
CAAGAGACTCTGTACCGCATCGTGACCACGCCGGTTCCCTATCCCTACGC
CTGGATTCTGAATGTGATGCTGGTGGTGTTTATCTACTCCGTACCTTTCC
TGTACGACTCTCAGCGCGGTGGATCTTATTTTGGGATGATCATTTTGGTA
GTGGCGTACTTTGGGTGCCAGCGAATTGCGCAGCAGTGCGAGAATCCCTT
GGAGTGGGACGCCTGCGATCTCGACGTCGAGCTCTTGACCATGAGTAACC
ATGACGAGACGCGCGACATTTCCAACTTTACGCACAGCCTCAACAAGGGC
TTCATCCCCAGCAATATTCGTCGCACTGCCCCTGAGCCTCCCGCGCCTGT
CCCCGATTTGGCCGCTTCACAATCCCCGCCGGAGGCAACAACGCCGACCA
AGCCTCCCCCTGAGTCACCCGAGTCGGCTGCGGCAGCGCCGTCGTCGTCC
GTGCCTGCTGATGCAAAGTAG
back to top
Synonyms
Publications